PDB: 2718 件ウェブページステータス検索Chemie searchBIRD

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8AGW	Yeast RQC complex in state D 分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Tesina, P, Buschauer, R, Beckmann, R. 登録日 2022-07-20 公開日 2023-03-08 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Molecular basis of eIF5A-dependent CAT tailing in eukaryotic ribosome-associated quality control. Mol.Cell, 83, 2023
7ZM7	CryoEM structure of mitochondrial complex I from Chaetomium thermophilum (inhibited by DDM) 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ... 著者 Laube, E, Kuehlbrandt, W. 登録日 2022-04-19 公開日 2022-11-30 最終更新日 2022-12-07 実験手法 ELECTRON MICROSCOPY (2.77 Å) 主引用文献 Conformational changes in mitochondrial complex I of the thermophilic eukaryote Chaetomium thermophilum. Sci Adv, 8, 2022
8A3D	Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound 分子名称: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 28S ribosomal RNA, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... 著者 Faille, A, Warren, A.J, Dent, K.C. 登録日 2022-06-08 公開日 2023-03-08 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (1.67 Å) 主引用文献 The chemical landscape of the human ribosome at 1.67 angstrom resolution. Biorxiv, 2023
7ZTA	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Leroy, E.C, Perry, T.N, Renault, T.T, Innis, C.A. 登録日 2022-05-09 公開日 2023-04-12 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Tetracenomycin X sequesters peptidyl-tRNA during translation of QK motifs. Nat.Chem.Biol., 19, 2023
8BF9	Molecular view of ER membrane remodeling by the Sec61/TRAP translocon. 分子名称: 60S ribosomal protein L39, Large ribosomal subunit protein eL31, Large ribosomal subunit protein eL38, ... 著者 Karki, S, Javanainen, M, Tranter, D, Rehan, S, Huiskonen, J, Happonen, L, Paavilainen, V. 登録日 2022-10-24 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.69 Å) 主引用文献 Molecular view of ER membrane remodeling by the Sec61/TRAP translocon. Embo Rep., 24, 2023
4XP7	Crystal structure of Human tRNA dihydrouridine synthase 2 分子名称: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, tRNA-dihydrouridine(20) synthase [NAD(P)+]-like 著者 Whelan, F, Jenkins, H.T, Griffiths, S, Byrne, R.T, Dodson, E.J, Antson, A.A. 登録日 2015-01-16 公開日 2015-01-28 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 From bacterial to human dihydrouridine synthase: automated structure determination. Acta Crystallogr.,Sect.D, 71, 2015
3W9Z	Crystal structure of DusC 分子名称: FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase C 著者 Chen, M, Yu, J, Tanaka, Y, Tanaka, I, Yao, M. 登録日 2013-04-19 公開日 2013-07-31 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure of dihydrouridine synthase C (DusC) from Escherichia coli Acta Crystallogr.,Sect.F, 69, 2013
4BF9	Crystal structure of E. coli dihydrouridine synthase C (DusC) (selenomethionine derivative) 分子名称: FLAVIN MONONUCLEOTIDE, TRNA-DIHYDROURIDINE SYNTHASE C 著者 Byrne, R.T, Whelan, F, Konevega, A, Aziz, N, Rodnina, M, Antson, A.A. 登録日 2013-03-16 公開日 2013-11-06 最終更新日 2015-05-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Major Reorientation of tRNA Substrates Defines Specificity of Dihydrouridine Synthases. Proc.Natl.Acad.Sci.USA, 112, 2015
4BFA	Crystal structure of E. coli dihydrouridine synthase C (DusC) 分子名称: 1,2-ETHANEDIOL, FLAVIN MONONUCLEOTIDE, NITRATE ION, ... 著者 Byrne, R.T, Whelan, F, Konevega, A, Aziz, N, Rodnina, M, Antson, A.A. 登録日 2013-03-16 公開日 2013-11-06 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Major Reorientation of tRNA Substrates Defines Specificity of Dihydrouridine Synthases. Proc.Natl.Acad.Sci.USA, 112, 2015
6EI9	Crystal structure of E. coli tRNA-dihydrouridine synthase B (DusB) 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FLAVIN MONONUCLEOTIDE, GLYCEROL, ... 著者 Bou-Nader, C, Hamdane, D. 登録日 2017-09-18 公開日 2018-01-17 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Unveiling structural and functional divergences of bacterial tRNA dihydrouridine synthases: perspectives on the evolution scenario. Nucleic Acids Res., 46, 2018
6EZA	Crystal Structure of human tRNA-dihydrouridine(20) synthase catalytic domain E294K mutant 分子名称: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, GLYCEROL, ... 著者 Bou-Nader, C, Bregeon, D, Pecqueur, L, Vincent, G, Fontecave, M, Hamdane, D. 登録日 2017-11-14 公開日 2018-09-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Electrostatic Potential in the tRNA Binding Evolution of Dihydrouridine Synthases. Biochemistry, 57, 2018
6EZB	Crystal Structure of human tRNA-dihydrouridine(20) synthase catalytic domain Q305K mutant 分子名称: FLAVIN MONONUCLEOTIDE, GLYCEROL, SULFATE ION, ... 著者 Bou-Nader, C, Bregeon, D, Pecqueur, L, Fontecave, M, Hamdane, D. 登録日 2017-11-14 公開日 2018-09-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Electrostatic Potential in the tRNA Binding Evolution of Dihydrouridine Synthases. Biochemistry, 57, 2018
6EZC	Crystal Structure of human tRNA-dihydrouridine(20) synthase catalytic domain E294K Q305K double mutant 分子名称: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, GLYCEROL, ... 著者 Bou-Nader, C, Bregeon, D, Vincent, G, Fontecave, M, Hamdane, D. 登録日 2017-11-14 公開日 2018-09-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Electrostatic Potential in the tRNA Binding Evolution of Dihydrouridine Synthases. Biochemistry, 57, 2018
4WFS	Crystal Structure of tRNA-dihydrouridine(20) synthase catalytic domain 分子名称: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, SULFATE ION, ... 著者 Bou-Nader, C, Pecqueur, L, Kamah, A, Bregeon, D, Golinelli-Pimpaneau, B, Guimaraes, B.G, Fontecave, M, Hamdane, D. 登録日 2014-09-17 公開日 2015-10-07 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 An extended dsRBD is required for post-transcriptional modification in human tRNAs. Nucleic Acids Res., 43, 2015
3B0P	tRNA-dihydrouridine synthase from Thermus thermophilus 分子名称: FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase 著者 Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I. 登録日 2011-06-12 公開日 2011-12-14 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Molecular basis of dihydrouridine formation on tRNA Proc.Natl.Acad.Sci.USA, 108, 2011
1VHN	Crystal structure of a putative flavin oxidoreductase with flavin 分子名称: FLAVIN MONONUCLEOTIDE, SULFATE ION, putative flavin oxidoreductase 著者 Structural GenomiX 登録日 2003-12-01 公開日 2003-12-30 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.59 Å) 主引用文献 The 1.59 A resolution crystal structure of TM0096, a flavin mononucleotide binding protein from Thermotoga maritima. Proteins, 55, 2004
3B0U	tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA fragment 分子名称: FLAVIN MONONUCLEOTIDE, RNA (5'-R(*GP*GP*(H2U)P*A)-3'), tRNA-dihydrouridine synthase 著者 Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I. 登録日 2011-06-14 公開日 2011-12-14 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.948 Å) 主引用文献 Molecular basis of dihydrouridine formation on tRNA Proc.Natl.Acad.Sci.USA, 108, 2011
3B0V	tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA 分子名称: FLAVIN MONONUCLEOTIDE, tRNA, tRNA-dihydrouridine synthase 著者 Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I. 登録日 2011-06-14 公開日 2011-12-14 最終更新日 2017-10-11 実験手法 X-RAY DIFFRACTION (3.51 Å) 主引用文献 Molecular basis of dihydrouridine formation on tRNA Proc.Natl.Acad.Sci.USA, 108, 2011

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