PDB: 47065 件ウェブページステータス検索Chemie searchBIRD

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5FKE	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU 分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-15 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5CNX	Crystal structure of Xaa-Pro aminopeptidase from Escherichia coli K12 分子名称: Aminopeptidase YpdF, CACODYLATE ION, GLYCEROL, ... 著者 Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D. 登録日 2015-07-18 公開日 2016-07-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases Proteins, 2018
4H53	Influenza N2-Tyr406Asp neuraminidase in complex with beta-Neu5Ac 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Vavricka, C.J, Liu, Y, Kiyota, H, Sriwilaijaroen, N, Qi, J, Tanaka, K, Wu, Y, Li, Q, Li, Y, Yan, J, Suzuki, Y, Gao, G.F. 登録日 2012-09-18 公開日 2013-02-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Influenza neuraminidase operates via a nucleophilic mechanism and can be targeted by covalent inhibitors Nat Commun, 4, 2013
3D8C	Factor inhibiting HIF-1 alpha D201G mutant in complex with ZN(II), alpha-ketoglutarate and HIF-1 alpha 19mer 分子名称: 2-OXOGLUTARIC ACID, GLYCEROL, HYPOXIA-INDUCIBLE FACTOR 1 ALPHA, ... 著者 McDonough, M.A, Chowdhury, R, Schofield, C.J. 登録日 2008-05-23 公開日 2008-08-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Evidence that two enzyme-derived histidine ligands are sufficient for iron binding and catalysis by factor inhibiting HIF (FIH). J.Biol.Chem., 283, 2008
4MYX	Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase, with a Internal Deletion of CBS Domain from Bacillus anthracis str. Ame complexed with P32 分子名称: 1,2-ETHANEDIOL, 2-chloro-5-{[(2-{3-[(1E)-N-hydroxyethanimidoyl]phenyl}propan-2-yl)carbamoyl]amino}benzamide, FORMIC ACID, ... 著者 Kim, Y, Makowska-Grzyska, M, Gu, M, Gorla, S.K, Hedstrom, L, Anderson, W.F, Joachimiak, A, CSGID, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2013-09-28 公開日 2014-07-23 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.701 Å) 主引用文献 Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase, with a Internal Deletion of CBS Domain from Bacillus anthracis str. Ame complexed with P32 To be Published
7QLP	Structure of beta-lactamase TEM-171 complexed with tazobactam intermediate at 2.3 A resolution 分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... 著者 Hakanpaa, J, Petrova, T, Samygina, V.R, Lamzin, V.S, Egorov, A.M. 登録日 2021-12-20 公開日 2022-07-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of the molecular class A beta-lactamase TEM-171 and its complexes with tazobactam. Acta Crystallogr D Struct Biol, 78, 2022
2VUV	Crystal structure of Codakine at 1.3A resolution 分子名称: CALCIUM ION, CITRIC ACID, CODAKINE, ... 著者 Gourdine, J.P, Cioci, G.C, Miguet, L, Unverzagt, C, Varrot, A, Gauthier, C, Smith-Ravin, E.J, Imberty, A. 登録日 2008-05-30 公開日 2008-08-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 High Affinity Interaction between a Bivalve C-Type Lectin and a Biantennary Complex-Type N-Glycan Revealed by Crystallography and Microcalorimetry. J.Biol.Chem., 283, 2008
2VRY	Mouse Neuroglobin with heme iron in the reduced ferrous state 分子名称: NEUROGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION 著者 Arcovito, A, Moschetti, T, D'Angelo, P, Mancini, G, Vallone, B, Brunori, M, Della Longa, S. 登録日 2008-04-16 公開日 2008-05-06 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 An X-Ray Diffraction and X-Ray Absorption Spectroscopy Joint Study of Neuroglobin. Arch.Biochem.Biophys., 475, 2008
7KMX	The capsid of Myoviridae Phage XM1 分子名称: Major capsid protein, Minor capsid protein 著者 Wang, Z, Klose, T, Jiang, W, Kuhn, R.J. 登録日 2020-11-03 公開日 2021-11-10 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of Vibrio phage XM1, a simple contractile DNA injection machine Biorxiv, 2021
1O1F	MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE 分子名称: SKELETAL MUSCLE ACTIN, SKELETAL MUSCLE MYOSIN II, SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN, ... 著者 Chen, L.F, Winkler, H, Reedy, M.K, Reedy, M.C, Taylor, K.A. 登録日 2002-11-15 公開日 2002-12-04 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (70 Å) 主引用文献 Molecular Modeling of Averaged Rigor Crossbridges from Tomograms of Insect Flight Muscle J.Struct.Biol., 138, 2002
4H84	Crystal structure of the catalytic domain of Human MMP12 in complex with a selective carboxylate based inhibitor. 分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Stura, E.A, Antoni, C, Vera, L, Cassar-Lajeunesse, E, Nuti, E, Dive, V, Rossello, A. 登録日 2012-09-21 公開日 2013-04-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.592 Å) 主引用文献 Crystallization of bi-functional ligand protein complexes. J.Struct.Biol., 182, 2013
5FLJ	enzyme-substrate-dioxygen complex of Ni-quercetinase 分子名称: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, DIMETHYL SULFOXIDE, NICKEL (II) ION, ... 著者 Jeoung, J.-H, Nianios, D, Fetzner, S, Dobbek, H. 登録日 2015-10-26 公開日 2016-06-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.818 Å) 主引用文献 Quercetin 2,4-Dioxygenase Activates Dioxygen in a Side-on O2 -Ni Complex. Angew.Chem.Int.Ed.Engl., 55, 2016
8UK3	The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+ (class 6 reconstruction) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Outer capsid glycoprotein VP7, ... 著者 De Sautu, M, Herrmann, T, Jenni, S, Harrison, S.C. 登録日 2023-10-12 公開日 2024-03-27 最終更新日 2024-04-17 実験手法 ELECTRON MICROSCOPY (8 Å) 主引用文献 The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2. Plos Pathog., 20, 2024
4H9L	Bacterial Photosynthetic Reaction Center from Rhodobacter sphaeroides with ILE M265 replaced with SER 分子名称: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (III) ION, ... 著者 Mattis, A.J, Wraight, C.A. 登録日 2012-09-24 公開日 2013-01-23 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.77 Å) 主引用文献 Bacterial Photosynthetic Reaction Center from Rhodobacter sphaeroides To be Published
7KFO	Crystal structure of the MarR family transcriptional regulator from Variovorax paradoxus bound to Indole 3 acetic acid 分子名称: 1H-INDOL-3-YLACETIC ACID, SULFATE ION, Transcriptional regulator, ... 著者 Walton, W.G, Redinbo, M.R, Dangl, J.L. 登録日 2020-10-14 公開日 2021-11-10 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Diverse MarR bacterial regulators of auxin catabolism in the plant microbiome. Nat Microbiol, 7, 2022
7QAT	Crystal structure of a cyclodipeptide synthase from Parcubacteria bacterium RAAC4_OD1_1, E174L 分子名称: Cyclodipeptide synthase 著者 Sutherland, E, Harding, C.J, Czekster, C.M. 登録日 2021-11-17 公開日 2022-09-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.402 Å) 主引用文献 Active site remodelling of a cyclodipeptide synthase redefines substrate scope. Commun Chem, 5, 2022
8VAN	Structure of the E. coli clamp loader bound to the beta clamp in an Initial-Binding conformation 分子名称: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... 著者 Landeck, J.T, Pajak, J, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (7.7 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
7QAW	Crystal structure of a cyclodipeptide synthase from Parcubacteria bacterium RAAC4_OD1_1, Y189F mutant 分子名称: Cyclodipeptide synthase 著者 Sutherland, E, Harding, C.J, Czekster, C.M. 登録日 2021-11-17 公開日 2022-09-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.285 Å) 主引用文献 Active site remodelling of a cyclodipeptide synthase redefines substrate scope. Commun Chem, 5, 2022
8VAT	Structure of the E. coli clamp loader bound to the beta clamp in a Open-RNAp/t conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
4N1U	Structure of human MTH1 in complex with TH588 分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, N~4~-cyclopropyl-6-(2,3-dichlorophenyl)pyrimidine-2,4-diamine, SULFATE ION 著者 Berntsson, R.P.-A, Jemth, A, Gustafsson, R, Svensson, L.M, Helleday, T, Stenmark, P. 登録日 2013-10-04 公開日 2014-04-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 MTH1 inhibition eradicates cancer by preventing sanitation of the dNTP pool. Nature, 508, 2014
2EC9	Crystal structure analysis of human Factor VIIa , Souluble tissue factor complexed with BCX-3607 分子名称: 1,5-anhydro-D-glucitol, 2'-((5-CARBAMIMIDOYLPYRIDIN-2-YLAMINO)METHYL)-4-(ISOBUTYLCARBAMOYL)-4'-VINYLBIPHENYL-2-CARBOXYLIC ACID, CALCIUM ION, ... 著者 Raman, K, Yarlagadda, B. 登録日 2007-02-13 公開日 2008-02-19 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Probing the S2 site of factor VIIa to generate potent and selective inhibitors: the structure of BCX-3607 in complex with tissue factor-factor VIIa. Acta Crystallogr.,Sect.D, 63, 2007
5CLP	Crystal Structure of CK2alpha with 3,4-dichlorophenethylamine bound 分子名称: 2-(3,4-dichlorophenyl)ethanamine, ACETATE ION, Casein kinase II subunit alpha 著者 Brear, P, De Fusco, C, Georgiou, K.H, Spring, D, Hyvonen, M. 登録日 2015-07-16 公開日 2016-07-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.684 Å) 主引用文献 Specific inhibition of CK2 alpha from an anchor outside the active site. Chem Sci, 7, 2016
7QAX	Crystal structure of a cyclodipeptide synthase from Parcubacteria bacterium RAAC4_OD1_1, E171Q mutant 分子名称: Cyclodipeptide synthase 著者 Sutherland, E, Harding, C.J, Czekster, C.M. 登録日 2021-11-17 公開日 2022-09-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.089 Å) 主引用文献 Active site remodelling of a cyclodipeptide synthase redefines substrate scope. Commun Chem, 5, 2022
7QAU	Crystal structure of a cyclodipeptide synthase from Parcubacteria bacterium RAAC4_OD1_1, D58N mutant 分子名称: Cyclodipeptide synthase 著者 Sutherland, E, Harding, C.J, Czekster, C.M. 登録日 2021-11-17 公開日 2022-09-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Active site remodelling of a cyclodipeptide synthase redefines substrate scope. Commun Chem, 5, 2022
5FZO	Crystal structure of the catalytic domain of human JmjD1C 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, MANGANESE (II) ION, ... 著者 Nowak, R, Talon, R, Krojer, T, Goubin, S, McDonough, M, Fairhead, M, Oppermann, U, Johansson, C. 登録日 2016-03-15 公開日 2016-03-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Crystal Structure of the Catalytic Domain of Human Jmjd1C To be Published

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