PDB: 35756 件ウェブページステータス検索Chemie searchBIRD

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7WI4	Cryo-EM structure of E.Coli FtsH protease cytosolic domains 分子名称: ATP-dependent zinc metalloprotease FtsH, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Qiao, Z, Gao, Y.G. 登録日 2022-01-02 公開日 2022-06-01 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Cryo-EM structure of the entire FtsH-HflKC AAA protease complex. Cell Rep, 39, 2022
1KIT	VIBRIO CHOLERAE NEURAMINIDASE 分子名称: CALCIUM ION, SIALIDASE 著者 Taylor, G.L, Crennell, S.J, Garman, E.F, Vimr, E.R, Laver, W.G. 登録日 1996-06-21 公開日 1997-06-05 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of Vibrio cholerae neuraminidase reveals dual lectin-like domains in addition to the catalytic domain. Structure, 2, 1994
2AZA	STRUCTURE OF AZURIN FROM ALCALIGENES DENITRIFICANS. REFINEMENT AT 1.8 ANGSTROMS RESOLUTION AND COMPARISON OF THE TWO CRYSTALLOGRAPHICALLY INDEPENDENT MOLECULES 分子名称: AZURIN, COPPER (II) ION, SULFATE ION 著者 Baker, E.N, Norris, G.E. 登録日 1986-10-14 公開日 1987-01-15 最終更新日 2017-11-29 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of azurin from Alcaligenes denitrificans refinement at 1.8 A resolution and comparison of the two crystallographically independent molecules. J.Mol.Biol., 203, 1988
5CG9	NgTET1 in complex with 5mC DNA in space group P3221 分子名称: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, DNA (5'-D(*TP*GP*TP*CP*AP*GP*(5CM)P*GP*CP*AP*TP*GP*G)-3'), ... 著者 Hashimoto, H, Pais, J.E, Dai, N, Zhang, X, Zheng, Y, Cheng, X. 登録日 2015-07-09 公開日 2015-09-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.693 Å) 主引用文献 Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA. Nucleic Acids Res., 43, 2015
7BL4	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle 分子名称: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Hilal, T, Nikolay, R, Spahn, C.M.T. 登録日 2021-01-18 公開日 2021-05-12 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization. Mol.Cell, 81, 2021
4HCP	crystal structure of Burkholderia pseudomallei effector protein chbp in complex with nedd8 分子名称: GLYCEROL, NEDD8, Putative ATP/GTP binding protein, ... 著者 Yao, Q, Shao, F. 登録日 2012-10-01 公開日 2012-11-21 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis. Proc.Natl.Acad.Sci.USA, 109, 2012
1E6R	Chitinase B from Serratia marcescens wildtype in complex with inhibitor allosamidin 分子名称: 2-acetamido-2-deoxy-beta-D-allopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-allopyranose, ALLOSAMIZOLINE, CHITINASE B, ... 著者 Komander, D, Synstad, B, Eijsink, V.G.H, Van Aalten, D.M.F. 登録日 2000-08-22 公開日 2001-06-22 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural Insights Into the Catalytic Mechanism of a Family 18 Exo-Chitinase Proc.Natl.Acad.Sci.USA, 98, 2001
7BL2	pre-50S-ObgE particle state 1 分子名称: 23S ribosomal RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ... 著者 Hilal, T, Nikolay, R, Schmidt, S, Spahn, C.M.T. 登録日 2021-01-18 公開日 2021-05-12 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization. Mol.Cell, 81, 2021
2B1K	Crystal structure of E. coli CcmG protein 分子名称: Thiol:disulfide interchange protein dsbE 著者 Ouyang, N, Gao, Y.G, Hu, H.Y, Xia, Z.X. 登録日 2005-09-15 公開日 2006-09-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structures of E. coli CcmG and its mutants reveal key roles of the N-terminal beta-sheet and the fingerprint region Proteins, 65, 2006
7BL6	50S-ObgE-GMPPNP particle 分子名称: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Hilal, T, Nikolay, R, Schmidt, S, Spahn, C.M.T. 登録日 2021-01-18 公開日 2021-05-12 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization. Mol.Cell, 81, 2021
1ZNH	Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex 分子名称: CADMIUM ION, Major Urinary Protein, OCTAN-1-OL 著者 Malham, R, Johnstone, S, Bingham, R.J, Barratt, E, Phillips, S.E, Laughton, C.A, Homans, S.W. 登録日 2005-05-11 公開日 2005-12-20 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Strong Solute-Solute Dispersive Interactions in a Protein-Ligand Complex. J.Am.Chem.Soc., 127, 2005
2AYA	Solution Structure of the C-Terminal 14 kDa Domain of the tau subunit from Escherichia coli DNA Polymerase III 分子名称: DNA polymerase III subunit tau 著者 Jergic, S, Dixon, N.E, Otting, G, Su, X.C. 登録日 2005-09-07 公開日 2006-11-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of Domains IVa and V of the tau subunit of Escherichia coli DNA polymerase III and interaction with the alpha subunit. Nucleic Acids Res., 35, 2007
7BL5	pre-50S-ObgE particle 分子名称: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... 著者 Hilal, T, Nikolay, R, Spahn, C.M.T, Schmidt, S. 登録日 2021-01-18 公開日 2021-05-12 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization. Mol.Cell, 81, 2021
4HCS	Structure of Novel subfamily CX chemokine solved by sulfur SAD 分子名称: Uncharacterized protein 著者 Rajasekaran, D, Fan, C, Meng, W, Pflugrath, J.W, Lolis, E.J. 登録日 2012-10-01 公開日 2013-10-16 最終更新日 2014-04-23 実験手法 X-RAY DIFFRACTION (1.28 Å) 主引用文献 Structural insight into the evolution of a new chemokine family from zebrafish. Proteins, 82, 2014
7BL3	pre-50S-ObgE particle state 2 分子名称: 23S ribosomal RNA, 50S ribosomal protein L11, 50S ribosomal protein L13, ... 著者 Hilal, T, Nikolay, R, Spahn, C.M.T. 登録日 2021-01-18 公開日 2021-05-12 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Snapshots of native pre-50S ribosomes reveal a biogenesis factor network and evolutionary specialization. Mol.Cell, 81, 2021
1ZOL	native beta-PGM 分子名称: MAGNESIUM ION, beta-phosphoglucomutase 著者 Zhang, G, Tremblay, L.W, Dai, J, Wang, L, Dunaway-Mariano, D, Allen, K.N. 登録日 2005-05-13 公開日 2005-08-30 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Catalytic cycling in beta-phosphoglucomutase: a kinetic and structural analysis Biochemistry, 44, 2005
2B05	Crystal Structure of 14-3-3 gamma in complex with a phosphoserine peptide 分子名称: 14-3-3 protein gamma, peptide 著者 Papagrigoriou, E, Elkins, J, Arrowsmith, C, Zhao, Y, Debreczeni, E.J, Edwards, A, Weigelt, J, Doyle, D, von Delft, F, Turnbull, A, Yang, X. 登録日 2005-09-13 公開日 2005-10-11 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Crystal Structure of 14-3-3 gamma in complex with a phosphoserine peptide TO BE PUBLISHED
5CL4	Alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-methyladenine analog or DNA containing an abasic site and a free nucleobase (71% substrate/29% product at 24 hours) 分子名称: 7-methyl-3H-imidazo[4,5-c]pyridin-4-amine, AlkD, DNA (5'-D(*CP*CP*CP*GP*AP*(DZM)P*AP*GP*TP*CP*CP*G)-3'), ... 著者 Mullins, E.A, Eichman, B.F. 登録日 2015-07-16 公開日 2015-10-28 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.866 Å) 主引用文献 The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions. Nature, 527, 2015
1KHN	E. COLI ALKALINE PHOSPHATASE MUTANT (D153HD330N) ZINC FORM 分子名称: Alkaline phosphatase, ZINC ION 著者 Le Du, M.H, Lamoure, C, Muller, B.H, Bulgakov, O.V, Lajeunesse, E, Menez, A, Boulain, J.C. 登録日 2001-11-30 公開日 2002-03-13 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase. J.Mol.Biol., 316, 2002
5CB5	Structural Insights into the Mechanism of Escherichia coli Ymdb 分子名称: ACETATE ION, ADENOSINE-5-DIPHOSPHORIBOSE, O-acetyl-ADP-ribose deacetylase, ... 著者 Zhang, W, Wang, C, Song, Y, Shao, C, Zhang, X, Zang, J. 登録日 2015-06-30 公開日 2015-11-04 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural insights into the mechanism of Escherichia coli YmdB: A 2'-O-acetyl-ADP-ribose deacetylase J.Struct.Biol., 192, 2015
4KHA	Structural basis of histone H2A-H2B recognition by the essential chaperone FACT 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Histone H2A, ... 著者 Hondele, M, Halbach, F, Hassler, M, Ladurner, A.G. 登録日 2013-04-30 公開日 2013-05-29 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural basis of histone H2A-H2B recognition by the essential chaperone FACT. Nature, 499, 2013
1E72	Myrosinase from Sinapis alba with bound gluco-hydroximolactam and sulfate or ascorbate 分子名称: (2S,3S,4R,5R)-6-(HYDROXYAMINO)-2-(HYDROXYMETHYL)-2,3,4,5-TETRAHYDROPYRIDINE-3,4,5-TRIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Burmeister, W.P. 登録日 2000-08-23 公開日 2001-01-05 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 High resolution X-ray crystallography shows that ascorbate is a cofactor for myrosinase and substitutes for the function of the catalytic base. J. Biol. Chem., 275, 2000
3ANP	Crystal structure of Thermus thermophilus FadR, a TetR familly transcriptional repressor, in complex with lauroyl-CoA. 分子名称: DODECYL-COA, LAURIC ACID, Transcriptional repressor, ... 著者 Agari, Y, Agari, K, Sakamoto, K, Kuramitsu, S, Shinkai, A. 登録日 2010-09-06 公開日 2011-03-09 最終更新日 2017-10-11 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation. Microbiology, 157, 2011
3CSG	Crystal Structure of Monobody YS1(MBP-74)/Maltose Binding Protein Fusion Complex 分子名称: Maltose-binding protein Monobody YS1 Fusion 著者 Gilbreth, R.N, Koide, S. 登録日 2008-04-09 公開日 2008-07-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.798 Å) 主引用文献 A Dominant Conformational Role for Amino Acid Diversity in Minimalist Protein-Protein Interfaces J.Mol.Biol., 381, 2008
5CNB	Ultrafast dynamics in myoglobin: 0.5 ps time delay 分子名称: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Barends, T.R.M, Foucar, L, Ardevol, A, Nass, K.J, Aquila, A, Botha, S, Doak, R.B, Falahati, K, Hartmann, E, Hilpert, M, Heinz, M, Hoffmann, M.C, Koefinger, J, Koglin, J, Kovacsova, G, Liang, M, Milathianaki, D, Lemke, H.T, Reinstein, J, Roome, C.M, Shoeman, R.L, Williams, G.J, Burghardt, I, Hummer, G, Boutet, S, Schlichting, I. 登録日 2015-07-17 公開日 2015-09-16 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation. Science, 350, 2015

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