PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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4ECU	Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 200 sec 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... 著者 Nakamura, T, Zhao, Y, Yang, W. 登録日 2012-03-26 公開日 2012-07-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.949 Å) 主引用文献 Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
5VY6	A self-assembling D-form DNA crystal lattice 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*GP*AP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*CP*A)-3'), ... 著者 Simmons, C.R, Yan, H. 登録日 2017-05-24 公開日 2017-08-02 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.064 Å) 主引用文献 Tuning the Cavity Size and Chirality of Self-Assembling 3D DNA Crystals. J. Am. Chem. Soc., 139, 2017
4ED2	Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.2 (Na+ HEPES) with 1 Ca2+ ion 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Nakamura, T, Zhao, Y, Yang, W. 登録日 2012-03-26 公開日 2012-07-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.711 Å) 主引用文献 Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
4ED3	Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.5 (Na+ HEPES) with 1 Ca2+ ion 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Nakamura, T, Zhao, Y, Yang, W. 登録日 2012-03-26 公開日 2012-07-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.791 Å) 主引用文献 Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
3Q8L	Crystal Structure of Human Flap Endonuclease FEN1 (WT) in complex with substrate 5'-flap DNA, SM3+, and K+ 分子名称: DNA (5'-D(*AP*CP*CP*GP*TP*CP*C)-3'), DNA (5'-D(*AP*CP*TP*CP*TP*GP*CP*CP*TP*CP*AP*AP*GP*AP*CP*GP*GP*T)-3'), DNA (5'-D(*TP*TP*GP*AP*GP*GP*CP*AP*GP*AP*GP*T)-3'), ... 著者 Tsutakawa, S.E, Classen, S, Chapados, B.R, Arvai, A, Finger, D.L, Guenther, G, Tomlinson, C.G, Thompson, P, Sarker, A.H, Shen, B, Cooper, P.K, Grasby, J.A, Tainer, J.A. 登録日 2011-01-06 公開日 2011-04-27 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.319 Å) 主引用文献 Human Flap Endonuclease Structures, DNA Double-Base Flipping, and a Unified Understanding of the FEN1 Superfamily. Cell(Cambridge,Mass.), 145, 2011
1PJJ	Complex between the Lactococcus lactis Fpg and an abasic site containing DNA. 分子名称: DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), Formamidopyrimidine-DNA glycosylase, ... 著者 Serre, L, Pereira de Jesus, K, Boiteux, S, Zelwer, C, Castaing, B. 登録日 2003-06-03 公開日 2004-06-08 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA. Nucleic Acids Res., 33, 2005
1KBD	SOLUTION STRUCTURE OF A 16 BASE-PAIR DNA RELATED TO THE HIV-1 KAPPA B SITE 分子名称: DNA (5'-D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)-3') 著者 Tisne, C, Hantz, E, Hartmann, B, Delepierre, M. 登録日 1998-11-28 公開日 1998-12-02 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution structure of a non-palindromic 16 base-pair DNA related to the HIV-1 kappa B site: evidence for BI-BII equilibrium inducing a global dynamic curvature of the duplex. J.Mol.Biol., 279, 1998
257D	ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA 分子名称: DNA (5'-D(*GP*CP*CP*GP*GP*C)-3') 著者 Mooers, B.H, Schroth, G.P, Baxter, W.W, Ho, P.S. 登録日 1996-03-31 公開日 1996-04-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. J.Mol.Biol., 249, 1995
7WM3	hnRNP A2/B1 RRMs in complex with single-stranded DNA 分子名称: DNA (5'-D(P*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), Heterogeneous nuclear ribonucleoproteins A2/B1 著者 Abula, A, Liu, Y, Guo, H, Li, T, Ji, X. 登録日 2022-01-14 公開日 2022-06-29 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Structural Insight Into hnRNP A2/B1 Homodimerization and DNA Recognition. J.Mol.Biol., 435, 2022
256D	ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA 分子名称: DNA (5'-D(*GP*(5CM)P*GP*CP*GP*C)-3') 著者 Mooers, B.H, Schroth, G.P, Baxter, W.W, Ho, P.S. 登録日 1996-03-31 公開日 1996-04-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. J.Mol.Biol., 249, 1995
220D	INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA 分子名称: BARIUM ION, DNA (5'-D(*AP*CP*CP*CP*GP*CP*GP*GP*GP*T)-3') 著者 Gao, Y.-G, Robinson, H, Van Boom, J.H, Wang, A.H.-J. 登録日 1995-06-26 公開日 1996-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA. Biophys.J., 69, 1995
212D	INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA 分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') 著者 Gao, Y.-G, Robinson, H, Van Boom, J.H, Wang, A.H.-J. 登録日 1995-06-26 公開日 1996-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA. Biophys.J., 69, 1995
2BNA	STRUCTURE OF A B-DNA DODECAMER AT 16 KELVIN 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Drew, H.R, Samson, S, Dickerson, R.E. 登録日 1981-11-12 公開日 1982-02-03 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure of a B-DNA dodecamer at 16 K. Proc.Natl.Acad.Sci.USA, 79, 1982
3P4J	Ultra-high resolution structure of d(CGCGCG)2 Z-DNA 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), SPERMINE 著者 Brzezinski, K, Brzuszkiewicz, A, Dauter, M, Kubicki, M, Jaskolski, M, Dauter, Z. 登録日 2010-10-06 公開日 2011-08-24 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (0.55 Å) 主引用文献 High regularity of Z-DNA revealed by ultra high-resolution crystal structure at 0.55 A. Nucleic Acids Res., 39, 2011
4B3P	Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface 分子名称: DNA, P51 RT, REVERSE TRANSCRIPTASE/RIBONUCLEASE H, ... 著者 Lapkouski, M, Tian, L, Miller, J.T, Le Grice, S.F.J, Yang, W. 登録日 2012-07-25 公開日 2013-01-16 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (4.839 Å) 主引用文献 Complexes of HIV-1 RT, Nnrti and RNA/DNA Hybrid Reveal a Structure Compatible with RNA Degradation Nat.Struct.Mol.Biol., 20, 2013
1QRV	CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA 分子名称: DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3'), HIGH MOBILITY GROUP PROTEIN D, SODIUM ION 著者 Murphy IV, F.V, Sweet, R.M, Churchill, M.E.A. 登録日 1999-06-15 公開日 1999-12-18 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition. EMBO J., 18, 1999
1PM5	Crystal structure of wild type Lactococcus lactis Fpg complexed to a tetrahydrofuran containing DNA 分子名称: DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), Formamidopyrimidine-DNA glycosylase, ... 著者 Pereira de Jesus-Tran, K, Serre, L, Zelwer, C, Castaing, B. 登録日 2003-06-10 公開日 2004-07-27 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA. Nucleic Acids Res., 33, 2005
117D	CRYSTAL AND MOLECULAR STRUCTURE OF THE ALTERNATING DODECAMER D(GCGTACGTACGC) IN THE A-DNA FORM: COMPARISON WITH THE ISOMORPHOUS NON-ALTERNATING DODECAMER D(CCGTACGTACGG) 分子名称: DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*C)-3') 著者 Bingman, C.A, Jain, S, Zon, G, Sundaralingam, M. 登録日 1993-02-10 公開日 1993-04-15 最終更新日 2023-03-22 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Crystal and molecular structure of the alternating dodecamer d(GCGTACGTACGC) in the A-DNA form: comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG). Nucleic Acids Res., 20, 1992
124D	STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE PURE RNA 分子名称: DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*G)-3'), RNA (5'-R(*CP*AP*UP*GP*UP*GP*AP*C)-3') 著者 Fedoroff, O.Y, Salazar, M, Reid, B.R. 登録日 1993-05-07 公開日 1993-10-31 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of a DNA:RNA Hybrid Duplex. Why Rnase H Does not Cleave Pure RNA J.Mol.Biol., 233, 1993
197D	ORTHORHOMBIC CRYSTAL STRUCTURE OF THE A-DNA OCTAMER D(GTACGTAC). COMPARISON WITH THE TETRAGONAL STRUCTURE 分子名称: DNA (5'-D(*GP*TP*AP*CP*GP*TP*AP*C)-3') 著者 Langlois D'Estaintot, B, Dautant, A, Courseille, C, Precigoux, G. 登録日 1994-11-24 公開日 1995-02-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Orthorhombic crystal structure of the A-DNA octamer d(GTACGTAC). Comparison with the tetragonal structure. Eur.J.Biochem., 213, 1993
1D70	SOLUTION STRUCTURE OF A DNA OCTAMER CONTAINING THE PRIBNOW BOX VIA RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE CONSTRAINTS DERIVED FROM TWO-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE SPECTRAL FITTING 分子名称: DNA (5'-D(*CP*AP*TP*TP*AP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*TP*AP*AP*TP*G)-3') 著者 Schmitz, U, James, T.L. 登録日 1992-04-15 公開日 1993-04-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a DNA octamer containing the Pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from two-dimensional nuclear magnetic resonance spectral fitting. J.Mol.Biol., 227, 1992
2K1N	DNA bound structure of the N-terminal domain of AbrB 分子名称: AbrB family transcriptional regulator, DNA (25-MER) 著者 Cavanagh, J, Bobay, B.G, Sullivan, D.M, Thompson, R.J. 登録日 2008-03-10 公開日 2008-11-11 最終更新日 2022-03-16 実験手法 SOLUTION NMR 主引用文献 Insights into the Nature of DNA Binding of AbrB-like Transcription Factors Structure, 16, 2008
457D	MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG): N6-METHOXYADENOSINE/ THYMIDINE BASE-PAIRS IN B-DNA 分子名称: DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Chatake, T, Ono, A, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 1999-03-06 公開日 2000-01-01 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis. J.Mol.Biol., 294, 1999
1A9G	APURINIC DNA WITH BOUND WATER AT THE DAMAGED SITE AND N3 OF CYTOSINE, BETA FORM, NMR, 1 STRUCTURE 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*TP*CP*TP*CP*GP*CP*G)-3') 著者 Beger, R.D, Bolton, P.H. 登録日 1998-04-06 公開日 1998-07-15 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Structures of apurinic and apyrimidinic sites in duplex DNAs. J.Biol.Chem., 273, 1998
1A9H	APURINIC DNA WITH BOUND WATER AT THE DAMAGED SITE AND O2 OF CYTOSINE, BETA FORM, NMR, 1 STRUCTURE 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AABP*AP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*TP*CP*TP*CP*GP*CP*G)-3') 著者 Beger, R.D, Bolton, P.H. 登録日 1998-04-06 公開日 1998-07-15 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Structures of apurinic and apyrimidinic sites in duplex DNAs. J.Biol.Chem., 273, 1998

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