PDB: 2049 件ウェブページステータス検索Chemie searchBIRD

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2QRF	Green Fluorescent Protein: Cyclized-only Intermediate of Chromophore Maturation in the Q183E variant 分子名称: 1,2-ETHANEDIOL, Green fluorescent protein, MAGNESIUM ION 著者 Wood, T.I, Barondeau, D.P, Hitomi, C, Tainer, J.A, Getzoff, E.D. 登録日 2007-07-28 公開日 2009-04-21 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Green Fluorescent Protein Chromophore - Cyclized Intermediate To be Published
3CD9	Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments 分子名称: Green fluorescent protein 著者 Lohman, J.R. 登録日 2008-02-26 公開日 2008-08-19 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (1.502 Å) 主引用文献 Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments Biochemistry, 47, 2008
6GP1	Structure of mEos4b in the red long-lived dark state 分子名称: Green to red photoconvertible GFP-like protein EosFP 著者 De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D. 登録日 2018-06-04 公開日 2019-05-22 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.504 Å) 主引用文献 Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM. Nat.Methods, 16, 2019
5OQ9	XFEL structure of the off state of a reversibly photoswitching fluorescent protein determined using the droplet on demand injection method 分子名称: Green to red photoconvertible GFP-like protein EosFP 著者 Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J. 登録日 2017-08-11 公開日 2017-12-06 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature. Int J Mol Sci, 18, 2017
9C74	superfolder Green Fluorescent Protein with meta-nitro-tyrosine incorporated at position 66 分子名称: Green fluorescent protein, SODIUM ION 著者 Phillips-Piro, C.M, Broughton, D.P. 登録日 2024-06-10 公開日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Modulating the pH Dependent Photophysical Properties of Green Fluorescent Protein Rsc Adv, 2024
3DQ8	Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 2: Structure 16 in a Series of 26 High Pressure Structures 分子名称: Green fluorescent protein 著者 Barstow, B, Kim, C.U. 登録日 2008-07-09 公開日 2008-09-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
6HOJ	Structure of Beclin1 LIR motif bound to GABARAP 分子名称: 1,2-ETHANEDIOL, Beclin-1,Gamma-aminobutyric acid receptor-associated protein, SULFATE ION 著者 Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T. 登録日 2018-09-17 公開日 2019-02-27 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy, 15, 2019
8DPD	superfolder GFP Tyr74pCNPhe mutant 分子名称: 1,2-ETHANEDIOL, CARBON DIOXIDE, DI(HYDROXYETHYL)ETHER, ... 著者 Phillips-Piro, C.M, Papoutsis, B, Piacentini, J. 登録日 2022-07-15 公開日 2022-08-31 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Superfolder GFP Tyr74pCNPhe mutant To Be Published
2ICR	Red fluorescent protein zRFP574 from Zoanthus sp. 分子名称: Red fluorescent protein zoanRFP, SULFATE ION 著者 Pletnev, S, Pletneva, N, Tikhonova, T, Pletnev, V. 登録日 2006-09-13 公開日 2007-10-02 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Refined crystal structures of red and green fluorescent proteins from the button polyp Zoanthus. Acta Crystallogr.,Sect.D, 63, 2007
6PFR	rsEGFP2 with a chlorinated chromophore in the fluorescent on-state 分子名称: Green fluorescent protein 著者 Chang, J, Romei, M.G, Boxer, S.G. 登録日 2019-06-22 公開日 2019-08-07 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Structural Evidence of Photoisomerization Pathways in Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019
3DQJ	Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 3: Structure 7 in a Series of 26 High Pressure Structures 分子名称: Green fluorescent protein 著者 Barstow, B, Kim, C.U. 登録日 2008-07-09 公開日 2008-09-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
7Z7O	Structure of the fluorescent protein NeonCyan0.95 at pH 7.5 分子名称: NeonCyan0.95 著者 Clavel, D, Dupuy, J, Royant, A. 登録日 2022-03-16 公開日 2022-05-04 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Cyan fluorescent proteins derived from mNeonGreen. Protein Eng.Des.Sel., 35, 2022
7A85	rsGreen0.7-K206A-F145L in the green-on state 分子名称: DI(HYDROXYETHYL)ETHER, Green fluorescent protein, TRIETHYLENE GLYCOL 著者 De Zitter, E, Dedecker, P, Van Meervelt, L. 登録日 2020-08-30 公開日 2021-02-17 最終更新日 2021-05-05 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*. Angew.Chem.Int.Ed.Engl., 60, 2021
4JLB	Crystal Structures of Adenylate kinase with 2ADP's 分子名称: ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase 著者 Cho, Y.-J, Kern, D. 登録日 2013-03-12 公開日 2014-06-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.528 Å) 主引用文献 The energy landscape of adenylate kinase during catalysis. Nat.Struct.Mol.Biol., 22, 2015
4GOB	Low pH Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, Least Evolved Ancestor (LEA) 分子名称: Kaede-type Fluorescent Protein 著者 Kim, H, Grunkemeyer, T.J, Chen, L, Fromme, R, Wachter, R.M. 登録日 2012-08-19 公開日 2013-07-31 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Acid-base catalysis and crystal structures of a least evolved ancestral GFP-like protein undergoing green-to-red photoconversion. Biochemistry, 52, 2013
5MAD	GFP-binding DARPin 3G61 分子名称: 3G61, DI(HYDROXYETHYL)ETHER, Green fluorescent protein, ... 著者 Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A. 登録日 2016-11-03 公開日 2017-12-06 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity. Sci Rep, 7, 2017
5D94	Crystal structure of LC3-LIR peptide complex 分子名称: Microtubule-associated proteins 1A/1B light chain 3B, Peptide from FYVE and coiled-coil domain-containing protein 1 著者 Takagi, K, Mizushima, T, Johansen, T. 登録日 2015-08-18 公開日 2015-10-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 FYCO1 Contains a C-terminally Extended, LC3A/B-preferring LC3-interacting Region (LIR) Motif Required for Efficient Maturation of Autophagosomes during Basal Autophagy J.Biol.Chem., 290, 2015
3SV5	Engineered medium-affinity halide-binding protein derived from YFP: iodide complex 分子名称: 1,2-ETHANEDIOL, FORMIC ACID, Green fluorescent protein, ... 著者 Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W. 登録日 2011-07-12 公開日 2012-07-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Visualization of Synaptic Inhibition with an Optogenetic Sensor Developed by Cell-Free Protein Engineering Automation. J.Neurosci., 33, 2013
5N9O	EGFP(enhanced green fluorescent protein) mutant - L232H 分子名称: 3,6,9,12,15-PENTAOXAHEPTADECAN-1-OL, Green fluorescent protein 著者 Kachalova, G.S, Popov, A.P, Simanovskaya, A.A, Krukova, M.V, Lipkin, A.V. 登録日 2017-02-26 公開日 2018-03-21 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Structure of EGFP(enhanced green fluorescent protein) mutant - L232H at 0.153 nm To Be Published
5OQA	XFEL structure of the off state of a reversibly photoswitching fluorescent protein determined using the GDVN injection method 分子名称: Green to red photoconvertible GFP-like protein EosFP 著者 Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J. 登録日 2017-08-11 公開日 2017-12-06 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature. Int J Mol Sci, 18, 2017
8OVY	Structure of analogue of superfolded GFP 分子名称: Green fluorescent protein 著者 Dunkelmann, D, Fiedler, M, Bellini, D, Alvira, C.P, Chin, J.W. 登録日 2023-04-26 公開日 2024-01-10 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.537 Å) 主引用文献 Adding alpha , alpha-disubstituted and beta-linked monomers to the genetic code of an organism. Nature, 625, 2024
6GFP	cyanobacterial GAPDH with NADP bound 分子名称: FORMIC ACID, Glyceraldehyde-3-phosphate dehydrogenase, MAGNESIUM ION, ... 著者 McFarlane, C.R, Briggs, L, Murray, J.W. 登録日 2018-05-01 公開日 2019-05-08 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Structural basis of light-induced redox regulation in the Calvin-Benson cycle in cyanobacteria. Proc.Natl.Acad.Sci.USA, 116, 2019
7GQU	Crystal Structure of Werner helicase fragment 517-945 in covalent complex with N-[(E,1S)-1-cyclopropyl-3-methylsulfonylprop-2-enyl]-2-(1,1-difluoroethyl)-4-phenoxypyrimidine-5-carboxamide 分子名称: ADENOSINE-5'-DIPHOSPHATE, Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN, GLYCEROL, ... 著者 Classen, M, Benz, J, Brugger, D, Tagliente, O, Rudolph, M.G. 登録日 2023-10-19 公開日 2024-05-01 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Chemoproteomic discovery of a covalent allosteric inhibitor of WRN helicase. Nature, 629, 2024
5G41	Crystal structure of adenylate kinase ancestor 4 with Zn, Mg and Ap5A bound 分子名称: ADENYLATE KINSE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ... 著者 Nguyen, V, Kutter, S, English, J, Kern, D. 登録日 2016-05-03 公開日 2016-12-28 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Evolutionary drivers of thermoadaptation in enzyme catalysis. Science, 355, 2017
6YLS	mEos4b - Directionality of Optical Properties of Fluorescent Proteins 分子名称: CHLORIDE ION, Green to red photoconvertible GFP-like protein EosFP, SODIUM ION 著者 Myskova, J, Rybakova, O, Brynda, J, Lazar, J. 登録日 2020-04-07 公開日 2020-12-16 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Directionality of light absorption and emission in representative fluorescent proteins. Proc.Natl.Acad.Sci.USA, 117, 2020

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