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PDB: 588 件
2I8U
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GDP-mannose mannosyl hydrolase-calcium-GDP product complex
分子名称: CALCIUM ION, GDP-mannose mannosyl hydrolase, GUANOSINE-5'-DIPHOSPHATE
著者Zou, Y, Li, C, Brunzelle, J.S, Nair, S.K.
登録日2006-09-03
公開日2007-06-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Molecular basis for substrate selectivity and specificity by an LPS biosynthetic enzyme
Biochemistry, 46, 2007
2KDW
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BU of 2kdw by Molmil
Solution structure of RppH mutant E53A from Escherichia coli
分子名称: RNA pyrophosphohydrolase
著者Li, H, Bi, Y, Jin, C.
登録日2009-01-19
公開日2010-01-26
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of RppH mutant E53A from Escherichia coli
To be Published
1K2E
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BU of 1k2e by Molmil
crystal structure of a nudix protein from Pyrobaculum aerophilum
分子名称: ACETIC ACID, GLYCEROL, NICKEL (II) ION, ...
著者Wang, S, Mura, C, Sawaya, M.R, Cascio, D, Eisenberg, D.
登録日2001-09-26
公開日2002-04-03
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets.
Acta Crystallogr.,Sect.D, 58, 2002
2AZW
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Crystal structure of the MutT/nudix family protein from Enterococcus faecalis
分子名称: MutT/nudix family protein, PENTAETHYLENE GLYCOL
著者Zhang, R, Zhou, M, Moy, S, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2005-09-12
公開日2006-01-10
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The 1.9A crystal structure of the MutT/nudix family protein from Enterococcus faecalis
To be Published
2I6K
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Crystal structure of human type I IPP isomerase complexed with a substrate analog
分子名称: ACETIC ACID, AMINOETHANOLPYROPHOSPHATE, Isopentenyl-diphosphate delta-isomerase 1, ...
著者Zhang, C, Wei, Z, Gong, W.
登録日2006-08-29
公開日2007-06-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of human IPP isomerase: new insights into the catalytic mechanism
J.Mol.Biol., 366, 2007
2B0V
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NUDIX hydrolase from Nitrosomonas europaea.
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, NUDIX hydrolase, ...
著者Osipiuk, J, Skarina, T, Savchenko, A, Edwards, A, Joachimiak, A, MCSG, Midwest Center for Structural Genomics (MCSG)
登録日2005-09-14
公開日2005-09-27
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献X-ray structure of NUDIX hydrolase from Nitrosomonas europaea.
To be Published
2B06
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Crystal structure of the MutT/nudix family protein from Streptococcus pneumoniae
分子名称: MAGNESIUM ION, MutT/nudix family protein
著者Zhang, R, Zhou, M, Abdullah, J, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2005-09-13
公開日2006-01-10
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献The 1.4 A crystal structure of the MutT/nudix family protein from Streptococcus pneumoniae
To be Published
1JKN
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Solution Structure of the Nudix Enzyme Diadenosine Tetraphosphate Hydrolase from Lupinus angustifolius Complexed with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase
著者Fletcher, J.I, Swarbrick, J.D, Maksel, D, Gayler, K.R, Gooley, P.R.
登録日2001-07-12
公開日2002-02-27
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献The structure of Ap(4)A hydrolase complexed with ATP-MgF(x) reveals the basis of substrate binding.
Structure, 10, 2002
2GT4
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Crystal Structure of the Y103F mutant of the GDP-mannose mannosyl hydrolase in complex with GDP-mannose and MG+2
分子名称: GDP-mannose mannosyl hydrolase, GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, MAGNESIUM ION, ...
著者Gabelli, S.B, Bianchet, M.A, Azurmendi, H.F, Mildvan, A.S, Amzel, L.A.
登録日2006-04-27
公開日2006-12-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction.
Biochemistry, 45, 2006
2GT2
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Structure of the E. coli GDP-mannose mannosyl hydrolase
分子名称: GDP-mannose mannosyl hydrolase
著者Gabelli, S.B, Bianchet, M.A, Azurmendi, H.F, MIldvan, A.S, Amzel, L.M.
登録日2006-04-27
公開日2006-12-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction.
Biochemistry, 45, 2006
2DSC
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BU of 2dsc by Molmil
Crystal structure of human ADP-ribose pyrophosphatase NUDT5 in complex with magnesium and ADP-ribose
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-sugar pyrophosphatase, MAGNESIUM ION
著者Zha, M, Zhong, C, Ding, J.
登録日2006-06-28
公開日2006-11-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structures of Human NUDT5 Reveal Insights into the Structural Basis of the Substrate Specificity
J.Mol.Biol., 364, 2006
1IRY
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Solution structure of the hMTH1, a nucleotide pool sanitization enzyme
分子名称: hMTH1
著者Mishima, M, Itoh, N, Sakai, Y, Kamiya, H, Nakabeppu, Y, Shirakawa, M.
登録日2001-10-25
公開日2003-12-23
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates
J.Biol.Chem., 279, 2004
2DSD
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Crystal structure of human ADP-ribose pyrophosphatase NUDT5 in complex with magnesium and AMP
分子名称: ADENOSINE MONOPHOSPHATE, ADP-sugar pyrophosphatase, MAGNESIUM ION
著者Zha, M, Zhong, C, Ding, J.
登録日2006-06-28
公開日2006-11-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structures of Human NUDT5 Reveal Insights into the Structural Basis of the Substrate Specificity
J.Mol.Biol., 364, 2006
1JRK
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Crystal Structure of a Nudix Protein from Pyrobaculum aerophilum Reveals a Dimer with Intertwined Beta Sheets
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Nudix homolog
著者Wang, S, Mura, C, Sawaya, M.R, Cascio, D, Eisenberg, D.
登録日2001-08-13
公開日2002-04-03
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets.
Acta Crystallogr.,Sect.D, 58, 2002
2FKB
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Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12
分子名称: ACETATE ION, GLYCEROL, MAGNESIUM ION, ...
著者Nocek, B, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2006-01-04
公開日2006-02-21
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12
To be Published
4KG4
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Crystal structure of Saccharomyces cerevisiae Dcp2 Nudix domain (E198Q mutation)
分子名称: mRNA-decapping enzyme subunit 2
著者Aglietti, R.A, Floor, S.N, Gross, J.D.
登録日2013-04-28
公開日2013-08-21
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme dcp2.
Structure, 21, 2013
2YYH
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Crystal structure of Nudix family protein from Aquifex aeolicus
分子名称: 8-OXO-dGTPase domain
著者Nakagawa, N, Kishishita, S, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-30
公開日2007-11-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of Nudix family protein from Aquifex aeolicus
To be Published
2YVP
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Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8
分子名称: MAGNESIUM ION, METHYLENE ADP-BETA-XYLOSE, MutT/nudix family protein
著者Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-13
公開日2008-02-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
2YVN
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Crystal structure of NDX2 from thermus thermophilus HB8
分子名称: MutT/nudix family protein
著者Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-13
公開日2008-02-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
4K6E
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Crystal structure of Saccharomyces cerevisiae Dcp2 Nudix domain in complex with Mg
分子名称: MAGNESIUM ION, mRNA-decapping enzyme subunit 2
著者Aglietti, R.A, Floor, S.N, Gross, J.D.
登録日2013-04-15
公開日2013-08-21
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme dcp2.
Structure, 21, 2013
4KG3
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Crystal structure of Saccharomyces cerevisiae Dcp2 Nudix domain in complex with Mg (E153Q mutation)
分子名称: MAGNESIUM ION, mRNA-decapping enzyme subunit 2
著者Aglietti, R.A, Floor, S.N, Gross, J.D.
登録日2013-04-28
公開日2013-08-21
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Active site conformational dynamics are coupled to catalysis in the mRNA decapping enzyme dcp2.
Structure, 21, 2013
3A6V
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Crystal structure of the MutT protein in MN(II) bound holo form
分子名称: L(+)-TARTARIC ACID, MANGANESE (II) ION, Mutator mutT protein, ...
著者Nakamura, T, Yamagata, Y.
登録日2009-09-09
公開日2009-10-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
3A6T
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Crystal structure of MutT-8-OXO-DGMP complex
分子名称: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, Mutator mutT protein, SODIUM ION, ...
著者Nakamura, T, Yamagata, Y.
登録日2009-09-09
公開日2009-10-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010
3ACA
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Crystal structure of human NUDT5 complexed with 8-oxo-dADP and manganese
分子名称: 8-oxo-7,8-dihydro-2'-deoxy-adenosine-5'-diphosphate, ADP-sugar pyrophosphatase, MANGANESE (II) ION
著者Arimori, T, Yamagata, Y.
登録日2009-12-30
公開日2011-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Diverse substrate recognition and hydrolysis mechanisms of human NUDT5
Nucleic Acids Res., 39, 2011
3A6U
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Crystal structure of MutT-8-OXO-dGMP-MN(II) complex
分子名称: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, Mutator mutT protein, ...
著者Nakamura, T, Yamagata, Y.
登録日2009-09-09
公開日2009-10-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base
J.Biol.Chem., 285, 2010

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