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PDB: 122 件
4QDW
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BU of 4qdw by Molmil
Joint X-ray and neutron structure of Streptomyces rubiginosus D-xylose isomerase in complex with two Ni2+ ions and linear L-arabinose
分子名称: L-arabinose, NICKEL (II) ION, Xylose isomerase
著者Kovalevsky, A.Y, Langan, P.
登録日2014-05-14
公開日2014-09-03
最終更新日2024-02-28
実験手法NEUTRON DIFFRACTION (1.8 Å), X-RAY DIFFRACTION
主引用文献L-Arabinose Binding, Isomerization, and Epimerization by D-Xylose Isomerase: X-Ray/Neutron Crystallographic and Molecular Simulation Study.
Structure, 22, 2014
3KBS
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BU of 3kbs by Molmil
Room Temperature X-ray structure of D-Xylose Isomerase in complex with 2Cd(2+) co-factors
分子名称: CADMIUM ION, Xylose isomerase
著者Kovalevsky, A.Y, Hanson, L, Langan, P.
登録日2009-10-20
公開日2010-06-16
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Metal ion roles and the movement of hydrogen during reaction catalyzed by D-xylose isomerase: a joint x-ray and neutron diffraction study.
Structure, 18, 2010
3KBV
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BU of 3kbv by Molmil
Room temperature structure of D-Xylose Isomerase in complex with 2Ni(2+) co-factors
分子名称: NICKEL (II) ION, Xylose isomerase
著者Kovalevsky, A.Y, Hanson, L, Langan, P.
登録日2009-10-20
公開日2010-06-16
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Metal ion roles and the movement of hydrogen during reaction catalyzed by D-xylose isomerase: a joint x-ray and neutron diffraction study.
Structure, 18, 2010
3KCJ
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BU of 3kcj by Molmil
Room temperature neutron structure of apo-D-Xylose Isomerase (refined jointly with X-ray structure 3KBJ)
分子名称: Xylose isomerase
著者Kovalevsky, A.Y, Langan, P.
登録日2009-10-21
公開日2010-09-29
最終更新日2024-04-03
実験手法NEUTRON DIFFRACTION (1.8 Å), X-RAY DIFFRACTION
主引用文献Identification of the Elusive Hydronium Ion Exchanging Roles with a Proton in an Enzyme at Lower pH Values
Angew.Chem.Int.Ed.Engl., 50, 2011
3KCO
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BU of 3kco by Molmil
Room temperature neutron structure of D-Xylose Isomerase in complex with two Ni2+ cations and d12-D-glucose in the linear form (refined jointly with X-ray structure 3KBN)
分子名称: D-glucose, NICKEL (II) ION, Xylose isomerase
著者Kovalevsky, A.Y, Langan, P.
登録日2009-10-21
公開日2010-06-16
最終更新日2024-04-03
実験手法NEUTRON DIFFRACTION (1.8 Å), X-RAY DIFFRACTION
主引用文献Metal ion roles and the movement of hydrogen during reaction catalyzed by D-xylose isomerase: a joint x-ray and neutron diffraction study.
Structure, 18, 2010
2GUB
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BU of 2gub by Molmil
Crystal Structure of Metal Free D-Xylose Isomerase.
分子名称: Xylose isomerase
著者Carrell, H.L, Katz, A.K, Glusker, J.P.
登録日2006-04-29
公開日2006-05-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Locating active-site hydrogen atoms in D-xylose isomerase: Time-of-flight neutron diffraction.
Proc.Natl.Acad.Sci.Usa, 103, 2006
6QNI
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BU of 6qni by Molmil
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 1.0 s timepoint
分子名称: COBALT (II) ION, MAGNESIUM ION, Xylose isomerase, ...
著者Mehrabi, P, Schulz, E.C, Miller, R.J.D.
登録日2019-02-11
公開日2019-10-02
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.846 Å)
主引用文献Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
6QNH
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Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 0ms timepoint
分子名称: COBALT (II) ION, MAGNESIUM ION, Xylose isomerase
著者Mehrabi, P, Schulz, E.C, Miller, R.J.D.
登録日2019-02-11
公開日2019-10-02
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.849 Å)
主引用文献Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
2G4J
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BU of 2g4j by Molmil
Anomalous substructure of Glucose isomerase
分子名称: CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ...
著者Mueller-Dieckmann, C, Weiss, M.S.
登録日2006-02-22
公開日2007-02-20
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths.
Acta Crystallogr.,Sect.D, 63, 2007
3QYS
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BU of 3qys by Molmil
Room Temperature X-ray Structure of D-Xylose Isomerase in complex with 0.6Ni2+ cation bound in M2 metal binding site at pH=5.8
分子名称: NICKEL (II) ION, Xylose isomerase
著者Kovalevsky, A.Y, Hanson, L, Langan, P.
登録日2011-03-03
公開日2011-08-17
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Identification of the Elusive Hydronium Ion Exchanging Roles with a Proton in an Enzyme at Lower pH Values.
Angew.Chem.Int.Ed.Engl., 50, 2011
8AWD
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BU of 8awd by Molmil
Xylose Isomerase in 95% relative humidity environment
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, MAGNESIUM ION, ...
著者Mehrabi, P, Sung, S, von Stetten, D, Prester, A, Hatton, C.E, Kleine-Doepke, S, Berkes, A, Gore, G, Leimkohl, J.P, Schikora, H, Kollewe, M, Rohde, H, Wilmanns, M, Tellkamp, F, Schulz, E.C.
登録日2022-08-29
公開日2023-05-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Millisecond cryo-trapping by the spitrobot crystal plunger simplifies time-resolved crystallography.
Nat Commun, 14, 2023
6QNJ
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BU of 6qnj by Molmil
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 4.5 s timepoint
分子名称: COBALT (II) ION, MAGNESIUM ION, Xylose isomerase, ...
著者Mehrabi, P, Schulz, E.C, Miller, R.J.D.
登録日2019-02-11
公開日2019-10-02
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.851 Å)
主引用文献Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
6QNC
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BU of 6qnc by Molmil
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 0.1 s timepoint
分子名称: COBALT (II) ION, MAGNESIUM ION, Xylose isomerase, ...
著者Mehrabi, P, Schulz, E.C, Miller, R.J.D.
登録日2019-02-10
公開日2019-10-02
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.897 Å)
主引用文献Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
6KCA
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BU of 6kca by Molmil
Room temperature structure of glucose isomerase delivered in shortening A by serial millisecond crystallography
分子名称: MAGNESIUM ION, Xylose isomerase
著者Nam, K.H.
登録日2019-06-27
公開日2020-05-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Shortening injection matrix for serial crystallography.
Sci Rep, 10, 2020
9XIA
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BU of 9xia by Molmil
X-RAY ANALYSIS OF D-XYLOSE ISOMERASE AT 1.9 ANGSTROMS: NATIVE ENZYME IN COMPLEX WITH SUBSTRATE AND WITH A MECHANISM-DESIGNED INACTIVATOR
分子名称: 3-deoxy-3-methyl-beta-D-fructofuranose, MANGANESE (II) ION, XYLOSE ISOMERASE
著者Carrell, H.L, Glusker, J.P.
登録日1990-10-11
公開日1991-10-15
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献X-ray analysis of D-xylose isomerase at 1.9 A: native enzyme in complex with substrate and with a mechanism-designed inactivator.
Proc.Natl.Acad.Sci.USA, 86, 1989
7NJG
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BU of 7njg by Molmil
Xylose isomerase grown inside HARE serial crystallography chip
分子名称: COBALT (II) ION, Xylose isomerase
著者Norton-Baker, B, Mehrabi, P, Boger, J, Schonherr, R, von Stetten, D, Schikora, H, Martin, R.W, Miller, R.J.D, Redecke, L, Schulz, E.C.
登録日2021-02-16
公開日2021-06-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A simple vapor-diffusion method enables protein crystallization inside the HARE serial crystallography chip.
Acta Crystallogr D Struct Biol, 77, 2021
8XIA
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BU of 8xia by Molmil
X-RAY ANALYSIS OF D-XYLOSE ISOMERASE AT 1.9 ANGSTROMS: NATIVE ENZYME IN COMPLEX WITH SUBSTRATE AND WITH A MECHANISM-DESIGNED INACTIVATOR
分子名称: D-xylose, MANGANESE (II) ION, XYLOSE ISOMERASE
著者Carrell, H.L, Glusker, J.P.
登録日1990-10-11
公開日1991-10-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献X-ray analysis of D-xylose isomerase at 1.9 A: native enzyme in complex with substrate and with a mechanism-designed inactivator.
Proc.Natl.Acad.Sci.USA, 86, 1989
4J4K
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BU of 4j4k by Molmil
Crystal structure of glucose isomerase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Xylose isomerase, ...
著者Kim, M.K, An, Y.J, Lee, S, Jeong, C.S, Cha, S.S.
登録日2013-02-07
公開日2014-04-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of glucose isomerase
To be Published
5Y4I
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BU of 5y4i by Molmil
Crystal structure of glucose isomerase in complex with glycerol in one metal binding mode
分子名称: ACETATE ION, GLYCEROL, MAGNESIUM ION, ...
著者Bae, J.E, Kim, I.J, Nam, K.H.
登録日2017-08-03
公開日2017-09-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Crystal structure of glucose isomerase in complex with xylitol inhibitor in one metal binding mode
Biochem. Biophys. Res. Commun., 493, 2017
3N4A
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BU of 3n4a by Molmil
Crystal structure of D-Xylose Isomerase in complex with S-1,2-Propandiol
分子名称: CHLORIDE ION, MANGANESE (II) ION, S-1,2-PROPANEDIOL, ...
著者Behnen, J, Heine, A, Klebe, G.
登録日2010-05-21
公開日2011-05-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Experimental and computational active site mapping as a starting point to fragment-based lead discovery.
Chemmedchem, 7, 2012
8AWX
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BU of 8awx by Molmil
Millisecond cryo-trapping by the spitrobot crystal plunger, Xylose Isomerase with Glucose at 1s
分子名称: MAGNESIUM ION, MANGANESE (II) ION, Xylose isomerase, ...
著者Mehrabi, P, Sung, S, von Stetten, D, Prester, A, Hatton, C.E, Kleine-Doepke, S, Berkes, A, Gore, G, Leimkohl, J.P, Schikora, H, Kollewe, M, Rohde, H, Wilmanns, M, Tellkamp, F, Schulz, E.C.
登録日2022-08-30
公開日2023-05-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Millisecond cryo-trapping by the spitrobot crystal plunger simplifies time-resolved crystallography.
Nat Commun, 14, 2023
7CVM
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BU of 7cvm by Molmil
Crystal structure of glucose isomerase by fixed-target serial synchrotron crystallography (500 ms)
分子名称: MAGNESIUM ION, Xylose isomerase
著者Nam, K.H.
登録日2020-08-26
公開日2020-09-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Fixed-Target Serial Synchrotron Crystallography Using Nylon Mesh and Enclosed Film-Based Sample Holder
Crystals, 10, 2020
4ZB0
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BU of 4zb0 by Molmil
A dehydrated form of glucose isomerase collected at room temperature.
分子名称: MANGANESE (II) ION, Xylose isomerase, alpha-D-glucopyranose, ...
著者Sandy, J.
登録日2015-04-14
公開日2016-03-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A generic protocol for protein crystal dehydration using the HC1b humidity controller.
Acta Crystallogr D Struct Biol, 72, 2016
4ZB2
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BU of 4zb2 by Molmil
A native form of glucose isomerase collected at room temperature.
分子名称: MANGANESE (II) ION, Xylose isomerase, alpha-D-glucopyranose, ...
著者Sandy, J.
登録日2015-04-14
公開日2016-03-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A generic protocol for protein crystal dehydration using the HC1b humidity controller.
Acta Crystallogr D Struct Biol, 72, 2016
4W4Q
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BU of 4w4q by Molmil
Glucose isomerase structure determined by serial femtosecond crystallography at SACLA
分子名称: CALCIUM ION, Xylose isomerase
著者Nango, E, Tanaka, T, Sugahara, M, Suzuki, M, Iwata, S.
登録日2014-08-15
公開日2014-11-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Grease matrix as a versatile carrier of proteins for serial crystallography
Nat.Methods, 12, 2015

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