7EAO
| |
7KEO
| Crystal structure of K29-linked di-ubiquitin in complex with synthetic antigen binding fragment | 分子名称: | PHOSPHATE ION, Synthetic antigen binding fragment, heavy chain, ... | 著者 | Yu, Y, Zheng, Q, Erramilli, S, Pan, M, Kossiakoff, A, Liu, L, Zhao, M. | 登録日 | 2020-10-11 | 公開日 | 2021-07-28 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | K29-linked ubiquitin signaling regulates proteotoxic stress response and cell cycle. Nat.Chem.Biol., 17, 2021
|
|
2ZVO
| NEMO CoZi domain in complex with diubiquitin in C2 space group | 分子名称: | NF-kappa-B essential modulator, UBC protein | 著者 | Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I. | 登録日 | 2008-11-12 | 公開日 | 2009-03-24 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation Cell(Cambridge,Mass.), 136, 2009
|
|
4XOL
| Observing the overall rocking motion of a protein in a crystal - Cubic Ubiquitin crystals. | 分子名称: | Ubiquitin, ZINC ION | 著者 | Coquelle, N, Peixiang, M, Schanda, P, Colletier, J.P. | 登録日 | 2015-01-16 | 公開日 | 2015-10-14 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.91 Å) | 主引用文献 | Observing the overall rocking motion of a protein in a crystal. Nat Commun, 6, 2015
|
|
5OE7
| |
5C7J
| CRYSTAL STRUCTURE OF NEDD4 WITH A UB VARIANT | 分子名称: | E3 ubiquitin-protein ligase NEDD4, Polyubiquitin-C | 著者 | Walker, J.R, Hu, J, Dong, A, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Tong, Y, Structural Genomics Consortium (SGC) | 登録日 | 2015-06-24 | 公開日 | 2016-03-16 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | System-Wide Modulation of HECT E3 Ligases with Selective Ubiquitin Variant Probes. Mol.Cell, 62, 2016
|
|
2ZVN
| NEMO CoZi domain incomplex with diubiquitin in P212121 space group | 分子名称: | NF-kappa-B essential modulator, UBC protein | 著者 | Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I. | 登録日 | 2008-11-12 | 公開日 | 2009-03-24 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation Cell(Cambridge,Mass.), 136, 2009
|
|
3EEC
| X-ray structure of human ubiquitin Cd(II) adduct | 分子名称: | CADMIUM ION, Ubiquitin | 著者 | Falini, G, Fermani, S, Tosi, G, Arnesano, F, Natile, G. | 登録日 | 2008-09-04 | 公開日 | 2009-03-10 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structural probing of Zn(II), Cd(II) and Hg(II) binding to human ubiquitin. Chem.Commun.(Camb.), 45, 2008
|
|
3N30
| Crystal Structure of cubic Zn3-hUb (human ubiquitin) adduct | 分子名称: | Ubiquitin, ZINC ION | 著者 | Siliqi, D, Caliandro, R, Arnesano, F, Natile, G, Falini, G, Fermani, S, Belviso, B.D. | 登録日 | 2010-05-19 | 公開日 | 2011-01-12 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Crystallographic analysis of metal-ion binding to human ubiquitin. Chemistry, 17, 2011
|
|
5WQ4
| |
7MYF
| Ubiquitin variant UbV.k.1 in complex with Ube2k | 分子名称: | Ubiquitin, Ubiquitin variant UbV.k.1, Ubiquitin-conjugating enzyme E2 K | 著者 | Middleton, A.J, Day, C.L, Teyra, J, Sidhu, S.S. | 登録日 | 2021-05-21 | 公開日 | 2021-08-25 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Identification of Ubiquitin Variants That Inhibit the E2 Ubiquitin Conjugating Enzyme, Ube2k. Acs Chem.Biol., 16, 2021
|
|
5ZQ6
| SidE-Ubi-ADPr | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, SidE, Ubiquitin | 著者 | Wang, Y, Gao, A, Gao, P. | 登録日 | 2018-04-17 | 公開日 | 2018-05-23 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.009 Å) | 主引用文献 | Structural Insights into Non-canonical Ubiquitination Catalyzed by SidE. Cell, 173, 2018
|
|
5C7M
| CRYSTAL STRUCTURE OF E3 LIGASE ITCH WITH A UB VARIANT | 分子名称: | E3 ubiquitin-protein ligase Itchy homolog, Polyubiquitin-C | 著者 | Walker, J.R, Hu, J, Dong, A, Wernimont, A, Zhang, W, Sidhu, S, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Tong, Y, Structural Genomics Consortium (SGC) | 登録日 | 2015-06-24 | 公開日 | 2016-03-16 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (3.03 Å) | 主引用文献 | System-Wide Modulation of HECT E3 Ligases with Selective Ubiquitin Variant Probes. Mol.Cell, 62, 2016
|
|
4BOZ
| Structure of OTUD2 OTU domain in complex with K11-linked di ubiquitin | 分子名称: | GLYCEROL, UBIQUITIN THIOESTERASE OTU1, UBIQUITIN-C | 著者 | Mevissen, T.E.T, Hospenthal, M.K, Geurink, P.P, Elliott, P.R, Akutsu, M, Arnaudo, N, Ekkebus, R, Kulathu, Y, Wauer, T, El Oualid, F, Freund, S.M.V, Ovaa, H, Komander, D. | 登録日 | 2013-05-22 | 公開日 | 2013-07-17 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (3.03 Å) | 主引用文献 | Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis. Cell(Cambridge,Mass.), 154, 2013
|
|
8EB0
| RNF216/E2-Ub/Ub transthiolation complex | 分子名称: | E3 ubiquitin-protein ligase RNF216, SULFATE ION, Ubiquitin, ... | 著者 | Cotton, T.R, Wang, X.S, Lechtenberg, B.C. | 登録日 | 2022-08-30 | 公開日 | 2023-01-18 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3.03 Å) | 主引用文献 | The unifying catalytic mechanism of the RING-between-RING E3 ubiquitin ligase family. Nat Commun, 14, 2023
|
|
8EAZ
| HOIL-1/E2-Ub/Ub transthiolation complex | 分子名称: | RanBP-type and C3HC4-type zinc finger-containing protein 1, Ubiquitin, Ubiquitin-conjugating enzyme E2 L3, ... | 著者 | Wang, X.S, Cotton, T.R, Lechtenberg, B.C. | 登録日 | 2022-08-30 | 公開日 | 2023-01-18 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3.08 Å) | 主引用文献 | The unifying catalytic mechanism of the RING-between-RING E3 ubiquitin ligase family. Nat Commun, 14, 2023
|
|
6EQI
| Structure of PINK1 bound to ubiquitin | 分子名称: | GLYCEROL, Nb696, Serine/threonine-protein kinase PINK1, ... | 著者 | Schubert, A.F, Gladkova, C, Pardon, E, Wagstaff, J.L, Freund, S.M.V, Steyaert, J, Maslen, S, Komander, D. | 登録日 | 2017-10-13 | 公開日 | 2017-11-08 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Structure of PINK1 in complex with its substrate ubiquitin. Nature, 552, 2017
|
|
4LCD
| |
7K6Q
| Active state Dot1 bound to the H4K16ac nucleosome | 分子名称: | DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ... | 著者 | Valencia-Sanchez, M.I, De Ioannes, P.E, Miao, W, Truong, D.M, Lee, R, Armache, J.-P, Boeke, J.D, Armache, K.-J. | 登録日 | 2020-09-21 | 公開日 | 2021-02-10 | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | 主引用文献 | Regulation of the Dot1 histone H3K79 methyltransferase by histone H4K16 acetylation. Science, 371, 2021
|
|
3JW0
| E2~Ubiquitin-HECT | 分子名称: | E3 ubiquitin-protein ligase NEDD4-like, Ubiquitin, Ubiquitin-conjugating enzyme E2 D2 | 著者 | Kamadurai, H.B, Schulman, B.A. | 登録日 | 2009-09-17 | 公開日 | 2010-01-12 | 最終更新日 | 2021-10-13 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Insights into ubiquitin transfer cascades from a structure of a UbcH5B approximately ubiquitin-HECT(NEDD4L) complex. Mol.Cell, 36, 2009
|
|
4DHZ
| The structure of h/ceOTUB1-ubiquitin aldehyde-UBC13~Ub | 分子名称: | Ubiquitin, Ubiquitin aldehyde, Ubiquitin thioesterase otubain-like, ... | 著者 | Wiener, R, Zhang, X, Wang, T, Wolberger, C. | 登録日 | 2012-01-30 | 公開日 | 2012-02-22 | 最終更新日 | 2017-11-15 | 実験手法 | X-RAY DIFFRACTION (3.11 Å) | 主引用文献 | The mechanism of OTUB1-mediated inhibition of ubiquitination. Nature, 483, 2012
|
|
6W9D
| |
8SVF
| BAP1/ASXL1 bound to the H2AK119Ub Nucleosome | 分子名称: | DNA/RNA (187-MER), DNA/RNA (327-MER), Histone H2A type 1, ... | 著者 | Thomas, J.F, Valencia-Sanchez, M.I, Armache, K.-J. | 登録日 | 2023-05-16 | 公開日 | 2023-08-30 | 最終更新日 | 2024-02-14 | 実験手法 | ELECTRON MICROSCOPY (3.2 Å) | 主引用文献 | Structural basis of histone H2A lysine 119 deubiquitination by Polycomb repressive deubiquitinase BAP1/ASXL1. Sci Adv, 9, 2023
|
|
7EB9
| |
7K6P
| Active state Dot1 bound to the unacetylated H4 nucleosome | 分子名称: | DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ... | 著者 | Valencia-Sanchez, M.I, De Ioannes, P.E, Miao, W, Truong, D.M, Lee, R, Armache, J.-P, Boeke, J.D, Armache, K.-J. | 登録日 | 2020-09-21 | 公開日 | 2021-02-10 | 最終更新日 | 2024-03-06 | 実験手法 | ELECTRON MICROSCOPY (3.2 Å) | 主引用文献 | Regulation of the Dot1 histone H3K79 methyltransferase by histone H4K16 acetylation. Science, 371, 2021
|
|