PDB: 56 resultsInfo pagesStatus searchChemie searchBIRD

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7YTA	crystal structure of NtAGDP3 AGD1-2 in complex with an H3K9me2 peptide Descriptor: AGDP3 AGD1-2, H3(1-15)K9me2 peptide Authors: Zhou, X, Du, J. Deposit date: 2022-08-13 Release date: 2022-10-12 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.31 Å) Cite: The H3K9me2-binding protein AGDP3 limits DNA methylation and transcriptional gene silencing in Arabidopsis. J Integr Plant Biol, 64, 2022
6IE6	Crystal structure of ADCP1 tandem Agenet domain 3-4 in complex with H3K9me2 Descriptor: Agenet domain-containing protein, H3K9me2 Authors: Zhao, S, Zhang, B, Li, H. Deposit date: 2018-09-13 Release date: 2019-01-16 Method: X-RAY DIFFRACTION (1.7 Å) Cite: ADCP1-tandem Agenet domain 1-2 in complex wit h H3K9me2 Cell Res., 29, 2019
6IE7	Crystal structure of ADCP1 tandem Agenet domain 1-2 in complex with H3K9me2 Descriptor: AMMONIUM ION, Agenet domain-containing protein, H3K9me2 peptide Authors: Zhao, S, Zhang, B, Li, H. Deposit date: 2018-09-13 Release date: 2019-01-16 Method: X-RAY DIFFRACTION (2.7 Å) Cite: ADCP1-tandem Agenet domain 1-2 in complex wit h H3K9me2 Cell Res., 29, 2019
5ZWX	Crystal structure of Raphanus sativus AGDP1 AGD12 in complex with an H3K9me2 peptide Descriptor: DUF724 domain-containing protein 6-like, H3(1-15)K9me2 peptide Authors: Du, X, Du, J. Deposit date: 2018-05-17 Release date: 2018-11-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin Nat Commun, 9, 2018
4FT2	crystal structure of Zea mays ZMET2 in complex H3(1-15)K9me2 peptide and SAH Descriptor: DNA (cytosine-5)-methyltransferase 1, H3 peptide, S-ADENOSYL-L-HOMOCYSTEINE Authors: Du, J, Patel, D.J. Deposit date: 2012-06-27 Release date: 2012-10-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants. Cell(Cambridge,Mass.), 151, 2012
4FSX	crystal structure of Se-substituted Zea mays ZMET2 in complex with SAH Descriptor: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE Authors: Du, J, Patel, D.J. Deposit date: 2012-06-27 Release date: 2012-10-17 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants. Cell(Cambridge,Mass.), 151, 2012
4FT4	crystal structure of Zea mays ZMET2 in complex H3(1-32)K9me2 peptide and SAH Descriptor: DNA (cytosine-5)-methyltransferase 1, H3(1-32)K9me2 peptide, S-ADENOSYL-L-HOMOCYSTEINE Authors: Du, J, Patel, D.J. Deposit date: 2012-06-27 Release date: 2012-10-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants. Cell(Cambridge,Mass.), 151, 2012
7YT9	crystal structure of AGD1-4 of Arabidopsis AGDP3 Descriptor: AGD1-4 of Arabidopsis AGDP3 Authors: Zhou, X, Du, J. Deposit date: 2022-08-13 Release date: 2022-10-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The H3K9me2-binding protein AGDP3 limits DNA methylation and transcriptional gene silencing in Arabidopsis. J Integr Plant Biol, 64, 2022
5ZWZ	Crystal structure of Arabidopsis thaliana AGDP1 AGD34 Descriptor: Agenet domain-containing protein Authors: Du, X, Du, J. Deposit date: 2018-05-17 Release date: 2018-11-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin Nat Commun, 9, 2018
3MTS	Chromo Domain of Human Histone-Lysine N-Methyltransferase SUV39H1 Descriptor: Histone-lysine N-methyltransferase SUV39H1 Authors: Lam, R, Li, Z, Wang, J, Crombet, L, Walker, J.R, Ouyang, H, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC) Deposit date: 2010-04-30 Release date: 2010-06-30 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure of the Human SUV39H1 Chromodomain and Its Recognition of Histone H3K9me2/3. Plos One, 7, 2012
3N9O	ceKDM7A from C.elegans, complex with H3K4me3 peptide, H3K9me2 peptide and NOG Descriptor: FE (II) ION, Histone H3 peptide, N-OXALYLGLYCINE, ... Authors: Yang, Y, Hu, L, Wang, P, Hou, H, Chen, C.D, Xu, Y. Deposit date: 2010-05-31 Release date: 2010-06-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.309 Å) Cite: Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans Cell Res., 20, 2010
6IE5	Crystal structure of ADCP1 tandem Agenet domain 3-4 Descriptor: Agenet domain-containing protein Authors: Zhao, S, Zhang, B, Li, H. Deposit date: 2018-09-13 Release date: 2019-01-16 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.298 Å) Cite: ADCP1-tandem Agenet domain 1-2 in complex wit h H3K9me2 Cell Res., 29, 2019
6IE4	Crystal structure of ADCP1 tandem Agenet domain 1-2 in complex with H3K9me1 Descriptor: Agenet domain-containing protein, H3K9me1 peptide Authors: Zhao, S, Zhang, B, Li, H. Deposit date: 2018-09-13 Release date: 2019-01-16 Method: X-RAY DIFFRACTION (2.696 Å) Cite: ADCP1-tandem Agenet domain 1-2 in complex wit h H3K9me2 Cell Res., 29, 2019
7EF3	crystal structure of maize SHH2 SAWADEE domain in complex with H3K9me2 peptide Descriptor: HB transcription factor, Histone H3.2, ZINC ION Authors: Wang, Y, Du, J. Deposit date: 2021-03-20 Release date: 2021-06-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Recognition of H3K9me1 by maize RNA-directed DNA methylation factor SHH2. J Integr Plant Biol, 63, 2021
4IUT	crystal structure of SHH1 SAWADEE domain in complex with H3K9me2 peptide Descriptor: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ... Authors: Du, J, Patel, D.J. Deposit date: 2013-01-21 Release date: 2013-05-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
7XPJ	crystal structure of rice ASI1 BAH domain Descriptor: BAH domain-containing protein Authors: Yuan, J, Du, J. Deposit date: 2022-05-04 Release date: 2023-01-11 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.301 Å) Cite: Molecular basis of locus-specific H3K9 methylation catalyzed by SUVH6 in plants. Proc.Natl.Acad.Sci.USA, 120, 2023
7XPK	crystal structure of rice ASI1 BAH domain in complex with a rice SUVH6 peptide Descriptor: Alpha-aminoacylpeptide hydrolase, BAH domain-containing protein Authors: Yuan, J, Du, J. Deposit date: 2022-05-04 Release date: 2023-01-11 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Molecular basis of locus-specific H3K9 methylation catalyzed by SUVH6 in plants. Proc.Natl.Acad.Sci.USA, 120, 2023
3K3O	Crystal structure of the catalytic core domain of human PHF8 complexed with alpha-ketoglutarate Descriptor: 2-OXOGLUTARIC ACID, FE (II) ION, PHD finger protein 8 Authors: Yu, L, Wang, Y, Huang, S, Wang, J, Deng, Z, Wu, W, Gong, W, Chen, Z. Deposit date: 2009-10-03 Release date: 2010-01-19 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural insights into a novel histone demethylase PHF8 Cell Res., 20, 2010
6Z2A	Structure of Clr4 mutant - F256A/F310A/F427A bound to SAH Descriptor: Histone-lysine N-methyltransferase, H3 lysine-9 specific, MAGNESIUM ION, ... Authors: Stirpe, A, Schalch, T. Deposit date: 2020-05-15 Release date: 2021-05-26 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.456 Å) Cite: SUV39 SET domains mediate crosstalk of heterochromatic histone marks. Elife, 10, 2021
7UBU	Crystal structure of ZMET2 in complex with hemimethylated CAG DNA and a histone H3Kc9me2 peptide Descriptor: 5MC SSDNA, C49 SSDNA, DNA (cytosine-5)-methyltransferase 1, ... Authors: Fang, J, Song, J. Deposit date: 2022-03-15 Release date: 2022-06-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Mechanistic basis for maintenance of CHG DNA methylation in plants. Nat Commun, 13, 2022
3N9L	ceKDM7A from C.elegans, complex with H3K4me3 peptide and NOG Descriptor: FE (II) ION, Histone H3 peptide, N-OXALYLGLYCINE, ... Authors: Yang, Y, Hu, L, Wang, P, Hou, H, Chen, C.D, Xu, Y. Deposit date: 2010-05-31 Release date: 2010-06-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.796 Å) Cite: Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans Cell Res., 20, 2010
3N9M	ceKDM7A from C.elegans, alone Descriptor: FE (II) ION, Putative uncharacterized protein, ZINC ION Authors: Yang, Y, Hu, L, Wang, P, Hou, H, Chen, C.D, Xu, Y. Deposit date: 2010-05-31 Release date: 2010-06-30 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.493 Å) Cite: Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans Cell Res., 20, 2010
3N9Q	ceKDM7A from C.elegans, complex with H3K4me3 peptide, H3K27me2 peptide and NOG Descriptor: FE (II) ION, Histone H3 peptide, N-OXALYLGLYCINE, ... Authors: Yang, Y, Hu, L, Wang, P, Hou, H, Chen, C.D, Xu, Y. Deposit date: 2010-05-31 Release date: 2010-06-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans Cell Res., 20, 2010
3N9N	ceKDM7A from C.elegans, complex with H3K4me3K9me2 peptide and NOG Descriptor: FE (II) ION, Histone H3 peptide, N-OXALYLGLYCINE, ... Authors: Yang, Y, Hu, L, Wang, P, Hou, H, Chen, C.D, Xu, Y. Deposit date: 2010-05-31 Release date: 2010-06-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.299 Å) Cite: Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans Cell Res., 20, 2010
3N9P	ceKDM7A from C.elegans, complex with H3K4me3K27me2 peptide and NOG Descriptor: FE (II) ION, Histone H3 peptide, N-OXALYLGLYCINE, ... Authors: Yang, Y, Hu, L, Wang, P, Hou, H, Chen, C.D, Xu, Y. Deposit date: 2010-05-31 Release date: 2010-06-30 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.388 Å) Cite: Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans Cell Res., 20, 2010

 

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