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314D	Z-DNA HEXAMER WITH 5' OVERHANGS THAT FORM A REVERSE WOBBLE BASE PAIR Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*GP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3'), ... Authors: Mooers, B.H.M, Eichman, B.F, Ho, P.S. Deposit date: 1997-02-04 Release date: 1997-08-05 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The structures and relative stabilities of d(G x G) reverse Hoogsteen, d(G x T) reverse wobble, and d(G x C) reverse Watson-Crick base-pairs in DNA crystals. J.Mol.Biol., 269, 1997
1CGC	DOUBLE HELIX CONFORMATION GROOVE DIMENSIONS AND LIGAND BINDING POTENTIAL OF A G/C-STRETCH IN B-DNA Descriptor: DNA (5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3') Authors: Heinemann, U, Bansal, M. Deposit date: 1992-01-15 Release date: 1993-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Double helix conformation, groove dimensions and ligand binding potential of a G/C stretch in B-DNA. EMBO J., 11, 1992
1D88	CONFORMATIONAL INFLUENCE OF THE RIBOSE 2'-HYDROXYL GROUP: CRYSTAL STRUCTURES OF DNA-RNA CHIMERIC DUPLEXES Descriptor: DNA/RNA (5'-D(*GP*CP*GP*TP*)-R(*AP*)-D(*TP*AP*CP*GP*C)-3') Authors: Egli, M, Usman, N, Rich, A. Deposit date: 1992-08-28 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Conformational influence of the ribose 2'-hydroxyl group: crystal structures of DNA-RNA chimeric duplexes. Biochemistry, 32, 1993
1D16	STRUCTURE OF A T4 HAIRPIN LOOP ON A Z-DNA STEM AND COMPARISON WITH A-RNA AND B-DNA LOOPS Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*GP*TP*TP*TP*TP*CP*GP*CP*GP*CP*G)-3') Authors: Chattopadhyaya, R, Grzeskowiak, K, Dickerson, R.E. Deposit date: 1988-04-12 Release date: 1989-01-09 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of a T4 hairpin loop on a Z-DNA stem and comparison with A-RNA and B-DNA loops. J.Mol.Biol., 211, 1990
1TDZ	Crystal Structure Complex Between the Lactococcus Lactis FPG (Mutm) and a FAPY-dG Containing DNA Descriptor: 5'-D(*CP*TP*CP*TP*TP*TP*(FOX)P*TP*TP*TP*CP*TP*CP*G)-3', 5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3', GLYCEROL, ... Authors: Coste, F, Ober, M, Carell, T, Boiteux, S, Zelwer, C, Castaing, B. Deposit date: 2004-05-24 Release date: 2004-09-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for the recognition of the FapydG lesion (2,6-diamino-4-hydroxy-5-formamidopyrimidine) by formamidopyrimidine-DNA glycosylase J.Biol.Chem., 279, 2004
1D13	MOLECULAR STRUCTURE OF AN A-DNA DECAMER D(ACCGGCCGGT) Descriptor: DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') Authors: Frederick, C.A, Quigley, G.J, Teng, M.-K, Coll, M, Van Der Marel, G.A, Van Boom, J.H, Rich, A, Wang, A.H.-J. Deposit date: 1989-10-20 Release date: 1990-10-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular structure of an A-DNA decamer d(ACCGGCCGGT). Eur.J.Biochem., 181, 1989
1D77	CRYSTAL STRUCTURE OF A B-DNA DODECAMER CONTAINING INOSINE, D(CGCIAATTCGCG), AT 2.4 ANGSTROMS RESOLUTION AND ITS COMPARISON WITH OTHER B-DNA DODECAMERS Descriptor: DNA (5'-D(*CP*GP*CP*IP*AP*AP*TP*TP*CP*GP*CP*G)-3') Authors: Xuan, J.C, Weber, I.T. Deposit date: 1992-05-30 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of a B-DNA dodecamer containing inosine, d(CGCIAATTCGCG), at 2.4 A resolution and its comparison with other B-DNA dodecamers. Nucleic Acids Res., 20, 1992
4E9H	structure of glycosylase domain of MBD4 bound to 5hmU containing DNA Descriptor: DNA (5'-D(*CP*CP*AP*GP*CP*GP*(5HU)P*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 Authors: Morera, S, Vigouroux, A. Deposit date: 2012-03-21 Release date: 2012-08-08 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3 Å) Cite: Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
6BEK	Structure of sIHF bound to an 8bp palindromic DNA Descriptor: DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3'), POTASSIUM ION, SCO1480 Authors: Guarne, A, Nanji, T.N, Shen, Y. Deposit date: 2017-10-25 Release date: 2018-10-31 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Streptomyces IHF uses multiple interfaces to bind DNA. Biochim Biophys Acta Gen Subj, 1863, 2019
4E9G	structure of the glycosylase domain of MBD4 bound to thymine containing DNA Descriptor: DNA (5'-D(*CP*CP*AP*GP*CP*GP*TP*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4 Authors: Morera, S, Vigouroux, A. Deposit date: 2012-03-21 Release date: 2012-08-08 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. Nucleic Acids Res., 40, 2012
8R1X	Solution structure and chemical shift assignments for HMG-D Y12F mutant complexed to a 14:12 dA2 bulge DNA Descriptor: DNA (5'-D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3'), High mobility group protein D Authors: Yang, J.C, Hill, G.R, Neuhaus, D. Deposit date: 2023-11-02 Release date: 2024-09-11 Method: SOLUTION NMR Cite: A Single Interfacial Point Mutation Rescues Solution Structure Determination of the Complex of HMG-D with a DNA Bulge. Chembiochem, 2024
260D	CRYSTAL STRUCTURE OF THE SELF-COMPLEMENTARY 5'-PURINE START DECAMER D(GCACGCGTGC) IN THE A-DNA CONFORMATION-PART II Descriptor: DNA (5'-D(*GP*CP*AP*CP*GP*CP*GP*TP*GP*C)-3') Authors: Ban, C, Sundaralingam, M. Deposit date: 1996-05-21 Release date: 1996-06-27 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of the self-complementary 5'-purine start decamer d(GCACGCGTGC) in the A-DNA conformation. II. Biophys.J., 71, 1996
1QBJ	CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX Descriptor: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3'), PROTEIN (DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE (ADAR1)) Authors: Schwartz, T, Rould, M.A, Rich, A. Deposit date: 1999-04-22 Release date: 1999-07-02 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA. Science, 284, 1999
116D	CRYSTAL AND MOLECULAR STRUCTURE OF THE A-DNA DODECAMER D(CCGTACGTACGG): CHOICE OF FRAGMENT HELICAL AXIS Descriptor: DNA (5'-D(*CP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*G)-3') Authors: Bingman, C.A, Zon, G, Sundaralingam, M. Deposit date: 1993-02-10 Release date: 1993-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal and molecular structure of the A-DNA dodecamer d(CCGTACGTACGG). Choice of fragment helical axis. J.Mol.Biol., 227, 1992
5CO8	Crystal structure of the Holliday junction-resolving enzyme GEN1 (WT) in complex with product DNA and Mg2+ ion Descriptor: DNA (31-MER), DNA (5'-D(*AP*GP*AP*CP*TP*GP*CP*AP*GP*TP*TP*GP*AP*GP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*A)-3'), ... Authors: Liu, Y.J, Freeman, A.D.J, Declais, A.C, Wilson, T.J, Gartner, A, Lilley, D.M.J. Deposit date: 2015-07-20 Release date: 2016-01-13 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA. Cell Rep, 13, 2015
8KGO	Structure of African swine fever virus topoisomerase II in complex with dsDNA Descriptor: DNA topoisomerase 2 Authors: Chen, Y, Xin, Y, Li, X, Cong, J. Deposit date: 2023-08-19 Release date: 2024-04-03 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural insights into the DNA topoisomerase II of the African swine fever virus. Nat Commun, 15, 2024
4O3R	Crystal structure of human polymerase eta extending an 8-oxog dna lesion: post insertion of 8-oxog-da pair Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*A)-3'), DNA (5'-D(*CP*AP*TP*GP*(8OG)P*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Patra, A, Egli, M. Deposit date: 2013-12-18 Release date: 2014-04-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.62 Å) Cite: Kinetics, Structure, and Mechanism of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Bypass by Human DNA Polymerase eta J.Biol.Chem., 289, 2014
8KGP	Structure of African swine fever virus topoisomerase II in complex with dsDNA Descriptor: DNA topoisomerase 2 Authors: Cong, J, Xin, Y, Li, X, Chen, Y. Deposit date: 2023-08-19 Release date: 2024-04-03 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural insights into the DNA topoisomerase II of the African swine fever virus. Nat Commun, 15, 2024
4FVM	Crystal structure of yeast DNA polymerase alpha Descriptor: DNA polymerase alpha catalytic subunit A Authors: Perera, R.L, Pellegrini, L. Deposit date: 2012-06-29 Release date: 2013-02-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Mechanism for priming DNA synthesis by yeast DNA Polymerase alpha eLife, 2, 2013
2F5N	MutM crosslinked to undamaged DNA sampling A:T base pair IC1 Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3', GLYCEROL, ... Authors: Banerjee, A, Santos, W.L, Verdine, G.L. Deposit date: 2005-11-26 Release date: 2006-03-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of a DNA glycosylase searching for lesions. Science, 311, 2006
2F5S	Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC1 Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3', ZINC ION, ... Authors: Banerjee, A, Santos, W.L, Verdine, G.L. Deposit date: 2005-11-26 Release date: 2006-03-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structure of a DNA glycosylase searching for lesions. Science, 311, 2006
4O3P	Crystal structure of human polymerase eta inserting dctp opposite an 8-oxog containing dna template Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(8OG)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Patra, A, Egli, M. Deposit date: 2013-12-18 Release date: 2014-04-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.72 Å) Cite: Kinetics, Structure, and Mechanism of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Bypass by Human DNA Polymerase eta J.Biol.Chem., 289, 2014
4O3O	Crystal structure of human polymerase eta inserting datp opposite an 8-oxog containing dna template Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(8OG)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Patra, A, Egli, M. Deposit date: 2013-12-18 Release date: 2014-04-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.698 Å) Cite: Kinetics, Structure, and Mechanism of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Bypass by Human DNA Polymerase eta J.Biol.Chem., 289, 2014
5ZUX	Solution Structure of the DNA complex of the C-terminal Domain of Rok Descriptor: DNA (5'-D(*CP*TP*AP*AP*TP*AP*AP*CP*TP*AP*GP*TP*TP*AP*TP*TP*AP*G)-3'), Rok Authors: Xia, B, Duan, B. Deposit date: 2018-05-08 Release date: 2018-10-17 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: How bacterial xenogeneic silencer rok distinguishes foreign from self DNA in its resident genome. Nucleic Acids Res., 46, 2018
4O3S	Crystal structure of human polymerase eta extending an 8-oxog dna lesion: post insertion of 8-oxog-dc pair Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*C)-3'), DNA (5'-D(*CP*AP*TP*GP*(8OG)P*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Patra, A, Egli, M. Deposit date: 2013-12-18 Release date: 2014-04-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.717 Å) Cite: Kinetics, Structure, and Mechanism of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Bypass by Human DNA Polymerase eta J.Biol.Chem., 289, 2014

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