PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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6KAE	Crosslinked alpha(Fe-CO)-beta(Ni) human hemoglobin A in the T quaternary structure at 95 K: Light Descriptor: BUT-2-ENEDIAL, CARBON MONOXIDE, Hemoglobin subunit alpha, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-21 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
6KAO	Carbonmonoxy human hemoglobin C in the R quaternary structure at 95 K: Dark Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-23 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
6KAR	Carbonmonoxy human hemoglobin C in the R quaternary structure at 140 K: Light Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-24 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
4CJ2	Crystal structure of HEWL in complex with affitin H4 Descriptor: AFFITIN H4, GLYCEROL, LYSOZYME C Authors: Correa, A, Pacheco, S, Mechaly, A.E, Obal, G, Behar, G, Mouratou, B, Oppezzo, P, Alzari, P.M, Pecorari, F. Deposit date: 2013-12-18 Release date: 2014-05-21 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Potent and Specific Inhibition of Glycosidases by Small Artificial Binding Proteins (Affitins) Plos One, 9, 2014
5K8H	The X-ray crystal structure of a parallel poly(rA) double helix generated by rA7 at acidic pH Descriptor: AMMONIUM ION, RNA 7-mer Authors: Gleghorn, M.L, Maquat, L.E. Deposit date: 2016-05-30 Release date: 2016-07-06 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.069 Å) Cite: Crystal structure of a poly(rA) staggered zipper at acidic pH: evidence that adenine N1 protonation mediates parallel double helix formation. Nucleic Acids Res., 44, 2016
8JY0	Crystal structure of RhoBAST complexed with TMR-DN Descriptor: 2,4-dinitroaniline, 5-aminocarbonyl-2-[3-(dimethylamino)-6-dimethylazaniumylidene-xanthen-9-yl]benzoate, GUANOSINE-5'-DIPHOSPHATE, ... Authors: Zhang, Y, Xiao, Y, Xu, Z, Fang, X. Deposit date: 2023-07-02 Release date: 2024-05-29 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural mechanisms for binding and activation of a contact-quenched fluorophore by RhoBAST. Nat Commun, 15, 2024
3L0C	Crystal structure of SCP1 phosphatase D206A mutant with trapped inorganic phosphate Descriptor: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, MAGNESIUM ION, PHOSPHATE ION Authors: Zhang, M, Zhang, Y. Deposit date: 2009-12-09 Release date: 2010-03-23 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Structural and functional analysis of the phosphoryl transfer reaction mediated by the human small C-terminal domain phosphatase, Scp1. Protein Sci., 19, 2010
3IZP	Conformation of EF-G during translocation Descriptor: Elongation factor G Authors: Li, W, Trabuco, L.G, Schulten, K, Frank, J. Deposit date: 2010-11-15 Release date: 2011-03-16 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY Cite: Molecular dynamics of EF-G during translocation. Proteins, 79, 2011
8OZE	cryoEM structure of SPARTA complex dimer high resolution Descriptor: DNA (5'-D(P*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*C)-3'), Piwi domain-containing protein, RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*G)-3'), ... Authors: Babatunde, E, Dong, C.N, Xu, H.L, Henning, S. Deposit date: 2023-05-09 Release date: 2023-08-16 Last modified: 2023-08-23 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
8OZI	cryoEM structure of SPARTA complex pre-NAD cleavage Descriptor: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Piwi domain-containing protein, ... Authors: Babatunde, E, Dong, C.N, Xu, H.L, Henning, S. Deposit date: 2023-05-09 Release date: 2023-08-16 Last modified: 2023-08-23 Method: ELECTRON MICROSCOPY (3.22 Å) Cite: Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
8OZG	cryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1 Descriptor: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), MAGNESIUM ION, Piwi domain-containing protein, ... Authors: Babatunde, E, Dong, C.N, Xu, H.L, Henning, S. Deposit date: 2023-05-09 Release date: 2023-08-16 Last modified: 2023-08-23 Method: ELECTRON MICROSCOPY (3.37 Å) Cite: Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
8OZD	cryoEM structure of SPARTA complex dimer-3 Descriptor: DNA (16-MER), Piwi domain-containing protein, RNA (18-MER), ... Authors: Ekundayo, B, Ni, D.C, Lu, X.H, Stahlberg, H. Deposit date: 2023-05-09 Release date: 2023-08-16 Last modified: 2023-08-23 Method: ELECTRON MICROSCOPY (3.89 Å) Cite: Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
8OZ6	cryoEM structure of SPARTA complex ligand-free Descriptor: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Piwi domain-containing protein, RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), ... Authors: Babatunde, E, Dong, C.N, Xu, H.L, Henning, S. Deposit date: 2023-05-08 Release date: 2023-08-16 Last modified: 2023-08-23 Method: ELECTRON MICROSCOPY (3.97 Å) Cite: Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
8OZF	cryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2 Descriptor: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Piwi domain-containing protein, RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), ... Authors: Babatunde, E, Dong, C.N, Xu, H.L, Henning, S. Deposit date: 2023-05-09 Release date: 2023-08-16 Last modified: 2023-08-23 Method: ELECTRON MICROSCOPY (3.73 Å) Cite: Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
6KAV	Carbonmonoxy human hemoglobin A in the R2 quaternary structure at 140 K: Light Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-24 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
5GUJ	Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG Descriptor: DNA primase Authors: Zhou, Y, Liu, Z, Wang, G. Deposit date: 2016-08-29 Release date: 2017-04-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria Sci Rep, 7, 2017
8QU4	NF-YB/C Heterodimer in Complex with a 13-mer NF-YA-derived Peptide Stabilized with C8-Hydrocarbon Linker in an alternative binding pose Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Nuclear transcription factor Y subunit alpha, ... Authors: Arbore, F, Durukan, C, Klintrot, C.I.R, Grossmann, T.N, Hennig, S. Deposit date: 2023-10-13 Release date: 2024-03-20 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.38 Å) Cite: Binding Dynamics of a Stapled Peptide Targeting the Transcription Factor NF-Y. Chembiochem, 25, 2024
6KAP	Carbonmonoxy human hemoglobin C in the R quaternary structure at 95 K: Light Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-23 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
6KAT	Carbonmonoxy human hemoglobin A in the R2 quaternary structure at 95 K: Light Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-24 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
6KAI	Crosslinked alpha(Ni)-beta(Fe) human hemoglobin A in the T quaternary structure at 95 K: Light Descriptor: BUT-2-ENEDIAL, CARBON MONOXIDE, Hemoglobin subunit alpha, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-23 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
6KAS	Carbonmonoxy human hemoglobin A in the R2 quaternary structure at 95 K: Dark Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-24 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
6KAH	Crosslinked alpha(Ni)-beta(Fe-CO) human hemoglobin A in the T quaternary structure at 95 K: Dark Descriptor: BUT-2-ENEDIAL, CARBON MONOXIDE, Hemoglobin subunit alpha, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-23 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
6KAQ	Carbonmonoxy human hemoglobin C in the R quaternary structure at 140 K: Dark Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-24 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
6KAU	Carbonmonoxy human hemoglobin A in the R2 quaternary structure at 140 K: Dark Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-24 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020
6KA9	Crosslinked alpha(Fe-CO)-beta(Ni) human hemoglobin A in the T quaternary structure at 95 K: Dark Descriptor: BUT-2-ENEDIAL, CARBON MONOXIDE, Hemoglobin subunit alpha, ... Authors: Shibayama, N, Park, S.Y, Ohki, M, Sato-Tomita, A. Deposit date: 2019-06-21 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Direct observation of ligand migration within human hemoglobin at work. Proc.Natl.Acad.Sci.USA, 117, 2020

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