PDB: 53102 resultsInfo pagesStatus searchChemie searchBIRD

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1M7P	Plasmodium Falciparum Triosephosphate isomerase (PfTIM) compled to substrate analog glycerol-3-phosphate (G3P). Descriptor: GLYCERALDEHYDE-3-PHOSPHATE, Triosephosphate Isomerase Authors: Parthasarathy, S, Balaram, H, Balaram, P, Murthy, M.R.N. Deposit date: 2002-07-22 Release date: 2002-11-29 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of Plasmodium falciparum triosephosphate isomerase complexed to substrate analogues: observation of the catalytic loop in the open conformation in the ligand-bound state. Acta Crystallogr.,Sect.D, 58, 2002
9C0I	Structure of the DRT2 reverse transcriptase in complex with its non-coding RNA Descriptor: DNA primer, DRT2 ncRNA, MAGNESIUM ION, ... Authors: Wilkinson, M.E, Zhang, F. Deposit date: 2024-05-25 Release date: 2024-09-04 Last modified: 2024-09-18 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: Phage-triggered reverse transcription assembles a toxic repetitive gene from a noncoding RNA. Science, 2024
9C0J	Structure of the elongating DRT2 reverse transcriptase in complex with its non-coding RNA and dNTPs Descriptor: DRT2 ncRNA, MAGNESIUM ION, POTASSIUM ION, ... Authors: Wilkinson, M.E, Zhang, F. Deposit date: 2024-05-25 Release date: 2024-09-04 Last modified: 2024-09-18 Method: ELECTRON MICROSCOPY (3.17 Å) Cite: Phage-triggered reverse transcription assembles a toxic repetitive gene from a noncoding RNA. Science, 2024
1M8I	inducible nitric oxide synthase with 5-nitroindazole bound Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, 5-NITROINDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, ... Authors: Rosenfeld, R.J, Garcin, E.D, Panda, K, Andersson, G, Aberg, A, Wallace, A.V, Stuehr, D.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2002-07-24 Release date: 2002-08-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Conformational Changes in Nitric Oxide Synthases Induced by Chlorzoxazone and Nitroindazoles: Crystallographic and Computational Analyses of Inhibitor Potency Biochemistry, 41, 2002
9C7V	Structure of the human BOS:human EMC complex in GDN Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BOS complex subunit NOMO2, ... Authors: Nguyen, V.N, Tomaleri, G.P, Voorhees, R.M. Deposit date: 2024-06-11 Release date: 2024-08-21 Last modified: 2024-09-25 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: Role of a holo-insertase complex in the biogenesis of biophysically diverse ER membrane proteins. Mol.Cell, 84, 2024
9C82	Structure of human ULK1C:PI3KC3-C1 supercomplex Descriptor: Beclin 1-associated autophagy-related key regulator, Beclin-1, Phosphatidylinositol 3-kinase catalytic subunit type 3, ... Authors: Chen, M, Hurley, J.H. Deposit date: 2024-06-11 Release date: 2024-07-03 Method: ELECTRON MICROSCOPY (6.84 Å) Cite: Structure and activation of the human autophagy-initiating ULK1C:PI3KC3-C1 supercomplex bioRxiv, 2023
9BB7	Backbone Modification in the GA Module of Protein PAB: ACPC residues at positions 5 and 39, beta3 residue at position 26 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Last modified: 2024-08-21 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 30, 2024
4LTI	Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 74% relative humidity (4/7) Descriptor: BARIUM ION, CHLORIDE ION, DNA, ... Authors: Hall, J.P, Sanchez-Weatherby, J, Cardin, C.J. Deposit date: 2013-07-23 Release date: 2014-09-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.41 Å) Cite: Controlled Dehydration of a Ruthenium Complex-DNA Crystal Induces Reversible DNA Kinking. J.Am.Chem.Soc., 136, 2014
6O78	Crystal structure of Csm1-Csm4 cassette in complex with pppApApA Descriptor: CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A), Csm4, MANGANESE (II) ION, ... Authors: Jia, N, Patel, D.J. Deposit date: 2019-03-07 Release date: 2019-07-31 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Second Messenger cA4Formation within the Composite Csm1 Palm Pocket of Type III-A CRISPR-Cas Csm Complex and Its Release Path. Mol.Cell, 75, 2019
6O7G	Solution structure of MLL4 PHD6 domain in complex with histone H4K16ac peptide Descriptor: Histone H4, Histone-lysine N-methyltransferase 2D, ZINC ION Authors: Zhang, Y, Kutateladze, T.G. Deposit date: 2019-03-07 Release date: 2019-05-22 Last modified: 2023-11-15 Method: SOLUTION NMR Cite: Selective binding of the PHD6 finger of MLL4 to histone H4K16ac links MLL4 and MOF. Nat Commun, 10, 2019
2ETT	Solution Structure of Human Sorting Nexin 22 PX Domain Descriptor: Sorting nexin-22 Authors: Song, J, Zhao, Q, Tyler, R.C, Lee, M.S, Newman, C.L, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG) Deposit date: 2005-10-27 Release date: 2005-11-15 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of human sorting nexin 22. Protein Sci., 16, 2007
9BB2	Backbone Modification in the GA Module of Protein PAB: beta3-residues at positions 20 and 24 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Last modified: 2024-08-21 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 30, 2024
2QB8	Saccharomyces cerevisiae cytosolic exopolyphosphatase, ATP complex Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Exopolyphosphatase, MAGNESIUM ION Authors: White, S.A, Ugochukwu, E. Deposit date: 2007-06-16 Release date: 2007-12-11 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The crystal structure of the cytosolic exopolyphosphatase from Saccharomyces cerevisiae reveals the basis for substrate specificity. J.Mol.Biol., 371, 2007
5W7A	Rabbit acyloxyacyl hydrolase (AOAH), proteolytically processed, S262A mutant, with LPS (low quality saposin domain) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-HYDROXY-TETRADECANOIC ACID, ... Authors: Gorelik, A, Illes, K, Nagar, B. Deposit date: 2017-06-19 Release date: 2018-01-03 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of the mammalian lipopolysaccharide detoxifier. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1MGR	Crystal structure of RNase Sa3,cytotoxic microbial ribonuclease Descriptor: Guanyl-specific ribonuclease Sa3, SULFATE ION Authors: Sevcik, J, Urbanikova, L, Leland, P.A, Raines, R.T. Deposit date: 2002-08-16 Release date: 2003-02-04 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Links X-ray Structure of Two Crystalline Forms of a Streptomycete Ribonuclease with Cytotoxic Activity J.Biol.Chem., 277, 2002
6O7Q	Nitrogenase MoFeP mutant S188A from Azotobacter vinelandii in the dithionite reduced state after redox cycling Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ... Authors: Rutledge, H.L, Tezcan, F.A. Deposit date: 2019-03-08 Release date: 2019-06-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Redox-Dependent Metastability of the Nitrogenase P-Cluster. J.Am.Chem.Soc., 141, 2019
2FLE	Structural analysis of asymmetric inhibitor bound to the HIV-1 Protease V82A mutant Descriptor: (2S,2'S)-N,N'-[(2S,3S,4S,5S)-1-CYCLOHEXYL-3,4-DIHYDROXY-6-PHENYLHEXANE-2,5-DIYL]BIS[3-METHYL-2-({[METHYL(PYRIDIN-2-YLMETHYL)AMINO]CARBONYL}AMINO)BUTANAMIDE], GLYCEROL, pol protein Authors: Clemente, J.C, Robbins, A, Dunn, B.M, Sussman, F. Deposit date: 2006-01-05 Release date: 2007-01-16 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Design, synthesis, evaluation, and crystallographic-based structural studies of HIV-1 protease inhibitors with reduced response to the V82A mutation. J.Med.Chem., 51, 2008
1MGW	Crystal structure of RNase Sa3, cytotoxic microbial ribonuclease Descriptor: Guanyl-specific ribonuclease Sa3, LITHIUM ION Authors: Sevcik, J, Urbanikova, L, Leland, P.A, Raines, R.T. Deposit date: 2002-08-16 Release date: 2003-02-04 Last modified: 2011-11-16 Method: X-RAY DIFFRACTION (2 Å) Cite: Links X-ray Structure of Two Crystalline Forms of a Streptomycete Ribonuclease with Cytotoxic Activity J.Biol.Chem., 277, 2002
4LQT	1.10A resolution crystal structure of a superfolder green fluorescent protein (W57A) mutant Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein Authors: Lovell, S, Xia, Y, Vo, B, Battaile, K.P, Egan, C, Karanicolas, J. Deposit date: 2013-07-19 Release date: 2013-12-18 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.1 Å) Cite: The designability of protein switches by chemical rescue of structure: mechanisms of inactivation and reactivation. J.Am.Chem.Soc., 135, 2013
6OKT	CDTb Double Heptamer Long Form Mask 1 Modeled from Cryo-EM Map Reconstructed using C7 Symmetry Descriptor: ADP-ribosyltransferase binding component Authors: Lacy, D.B, Sheedlo, M.J, Anderson, D.M. Deposit date: 2019-04-15 Release date: 2019-10-30 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structural insights into the transition of Clostridioides difficile binary toxin from prepore to pore. Nat Microbiol, 5, 2020
6OLM	CryoEM structure of PilT4 from Geobacter metallireducens with added ATP: C6cccccc conformation Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Twitching motility pilus retraction ATPase Authors: McCallum, M, Howell, P.L. Deposit date: 2019-04-16 Release date: 2019-11-20 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Multiple conformations facilitate PilT function in the type IV pilus. Nat Commun, 10, 2019
4LR3	Crystal structure of E. coli YfbU at 2.5 A resolution Descriptor: MAGNESIUM ION, PHOSPHATE ION, protein YfbU Authors: Wang, J, Wing, R.A. Deposit date: 2013-07-19 Release date: 2014-04-30 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Diamonds in the rough: a strong case for the inclusion of weak-intensity X-ray diffraction data. Acta Crystallogr.,Sect.D, 70, 2014
2EU1	Crystal structure of the chaperonin GroEL-E461K Descriptor: GROEL Authors: Cabo-Bilbao, A, Spinelli, S, Sot, B, Agirre, J, Mechaly, A.E, Muga, A, Guerin, D.M.A. Deposit date: 2005-10-28 Release date: 2006-08-29 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.29 Å) Cite: Crystal structure of the temperature-sensitive and allosteric-defective chaperonin GroEL(E461K). J.Struct.Biol., 155, 2006
5X50	RNA Polymerase II from Komagataella Pastoris (Type-2 crystal) Descriptor: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... Authors: Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. Deposit date: 2017-02-14 Release date: 2017-05-17 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (4.293 Å) Cite: Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017
5X51	RNA Polymerase II from Komagataella Pastoris (Type-3 crystal) Descriptor: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... Authors: Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. Deposit date: 2017-02-14 Release date: 2017-05-17 Method: X-RAY DIFFRACTION (6.996 Å) Cite: Crystal structure of RNA polymerase II from Komagataella pastoris Biochem. Biophys. Res. Commun., 487, 2017

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