PDB: 6402 resultsInfo pagesStatus searchChemie searchBIRD

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7R51	Structure of P. gingivalis DPP11 in complex with the dipeptide Arg-Asp Descriptor: ARG-ASP, Asp/Glu-specific dipeptidyl-peptidase Authors: Tham, C.T, Coker, J.A, Foster, W.R, Ohara-Nemoto, Y, Nemoto, T.K, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-02-09 Release date: 2022-05-04 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.808 Å) Cite: Structure of P. gingivalis DPP11 in complex with the dipeptide Arg-Asp To Be Published
5SDE	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z1619978933 Descriptor: 5-fluoro-1-[(5-methyl-1,3,4-thiadiazol-2-yl)methyl]-1,2,3,6-tetrahydropyridine, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (1.854 Å) Cite: PanDDA analysis group deposition To Be Published
5SDK	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z416341642 Descriptor: (2S)-N,2-dimethyl-N-(propan-2-yl)morpholine-4-sulfonamide, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (1.977 Å) Cite: PanDDA analysis group deposition To Be Published
5SDJ	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z32327641 Descriptor: Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION, [4-(cyclopropanecarbonyl)piperazin-1-yl](furan-2-yl)methanone Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.041 Å) Cite: PanDDA analysis group deposition To Be Published
5SDI	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z44592329 Descriptor: Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION, N-phenyl-N'-pyridin-3-ylurea Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (1.898 Å) Cite: PanDDA analysis group deposition To Be Published
5SDP	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2277255954 Descriptor: 5-fluoro-1-(1-methylcyclopropane-1-sulfonyl)-1,2,3,6-tetrahydropyridine, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (2.195 Å) Cite: PanDDA analysis group deposition To Be Published
5SDH	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434854 Descriptor: 1-[(3-methoxyphenyl)methyl]piperidine-4-carboxamide, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (2.313 Å) Cite: PanDDA analysis group deposition To Be Published
5SDO	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z19735067 Descriptor: 2-(4-fluorophenoxy)-1-(pyrrolidin-1-yl)ethan-1-one, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (2.051 Å) Cite: PanDDA analysis group deposition To Be Published
5SDG	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z136583524 Descriptor: 2-methyl-N-(pyridin-4-yl)furan-3-carboxamide, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (1.95 Å) Cite: PanDDA analysis group deposition To Be Published
5SDQ	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434887 Descriptor: 2-[(morpholin-4-yl)methyl]phenol, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (1.92 Å) Cite: PanDDA analysis group deposition To Be Published
5SDC	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434912 Descriptor: 3-[(4-methylpiperidin-1-yl)methyl]-1H-indole, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (1.928 Å) Cite: PanDDA analysis group deposition To Be Published
5SDF	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434834 Descriptor: Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION, N-(2,3-dimethylphenyl)-2-(morpholin-4-yl)acetamide Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (1.877 Å) Cite: PanDDA analysis group deposition To Be Published
5SDN	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z437584380 Descriptor: (4-chlorophenyl)(thiomorpholin-4-yl)methanone, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (2.023 Å) Cite: PanDDA analysis group deposition To Be Published
5SDL	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z321318226 Descriptor: Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION, N-(4-methoxyphenyl)-N'-pyridin-4-ylurea Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (2.44 Å) Cite: PanDDA analysis group deposition To Be Published
5SDR	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z1273312153 Descriptor: Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION, N-methyl-1H-indole-7-carboxamide Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.077 Å) Cite: PanDDA analysis group deposition To Be Published
5SDD	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434879 Descriptor: 2-[(4-methyl-1H-imidazol-5-yl)methyl]-1,2,3,4-tetrahydroisoquinoline, Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.839 Å) Cite: PanDDA analysis group deposition To Be Published
5SDM	PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z1328078283 Descriptor: Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION, N-(cyclopropylmethyl)-2,2,3,3-tetramethylazetidine-1-carboxamide Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (2.039 Å) Cite: PanDDA analysis group deposition To Be Published
5SDS	PanDDA analysis group deposition of ground-state model of Porphyromonas gingivalis DPP11 Descriptor: Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION Authors: Tham, C.T, Coker, J.A, Krojer, T, Foster, W.R, Koekemoer, L, Douangamath, A, Talon, R, Fearon, D, von Delft, F, Yue, W.W, Bountra, C, Bezerra, G.A. Deposit date: 2022-01-20 Release date: 2022-02-09 Method: X-RAY DIFFRACTION (1.91 Å) Cite: PanDDA analysis group deposition of ground-state model To Be Published
5JWF	Crystal structure of Porphyromonas gingivalis DPP11 Descriptor: Asp/Glu-specific dipeptidyl-peptidase, GLYCEROL, S-1,2-PROPANEDIOL Authors: Bezerra, G.A, Fedosyuk, S, Ohara-Nemoto, Y, Nemoto, T.K, Djinovic-Carugo, K. Deposit date: 2016-05-12 Release date: 2017-06-14 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Bacterial protease uses distinct thermodynamic signatures for substrate recognition. Sci Rep, 7, 2017
3I9Y	Crystal structure of the V. parahaemolyticus histidine kinase sensor TorS sensor domain Descriptor: Sensor protein Authors: Moore, J.O, Hendrickson, W.A. Deposit date: 2009-07-13 Release date: 2009-10-06 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Structural analysis of sensor domains from the TMAO-responsive histidine kinase receptor TorS Structure, 17, 2009
3O1H	Crystal Structure of the TorS sensor domain - TorT complex in the presence of TMAO Descriptor: Periplasmic protein TorT, Sensor protein TorS, trimethylamine oxide Authors: Moore, J.O, Hendrickson, W.A. Deposit date: 2010-07-21 Release date: 2011-12-21 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (3.1 Å) Cite: An asymmetry-to-symmetry switch in signal transmission by the histidine kinase receptor for TMAO. Structure, 20, 2012
3O1J	Crystal Structure of the TorS sensor domain - TorT complex in the absence of isopropanol Descriptor: ISOPROPYL ALCOHOL, Periplasmic protein TorT, Sensor protein TorS Authors: Moore, J.O, Hendrickson, W.A. Deposit date: 2010-07-21 Release date: 2011-12-21 Last modified: 2013-03-27 Method: X-RAY DIFFRACTION (2.95 Å) Cite: An asymmetry-to-symmetry switch in signal transmission by the histidine kinase receptor for TMAO. Structure, 20, 2012
3O1I	Crystal Structure of the TorS sensor domain - TorT complex in the absence of ligand Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Periplasmic protein TorT, Sensor protein TorS Authors: Moore, J.O, Hendrickson, W.A. Deposit date: 2010-07-21 Release date: 2011-12-21 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.8 Å) Cite: An asymmetry-to-symmetry switch in signal transmission by the histidine kinase receptor for TMAO. Structure, 20, 2012
3BXW	Crystal Structure of Stabilin-1 Interacting Chitinase-Like Protein, SI-CLP Descriptor: Chitinase domain-containing protein 1, SULFATE ION Authors: Meng, G, Green, T.J. Deposit date: 2008-01-15 Release date: 2009-01-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of human stabilin-1 interacting chitinase-like protein (SI-CLP) reveals a saccharide-binding cleft with lower sugar-binding selectivity. J.Biol.Chem., 285, 2010
3ID2	Crystal Structure of RseP PDZ2 domain Descriptor: IODIDE ION, Regulator of sigma E protease Authors: Li, X, Wang, B, Feng, L, Wang, J, Shi, Y. Deposit date: 2009-07-20 Release date: 2009-08-11 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.089 Å) Cite: Cleavage of RseA by RseP requires a carboxyl-terminal hydrophobic amino acid following DegS cleavage Proc.Natl.Acad.Sci.USA, 106, 2009

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