PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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7AOF	Atomic structure of the poxvirus transcription late pre-initiation complex Descriptor: DNA-directed RNA polymerase, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... Authors: Grimm, C, Bartuli, J, Fischer, U. Deposit date: 2020-10-14 Release date: 2021-10-06 Last modified: 2021-10-20 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Structural basis of the complete poxvirus transcription initiation process. Nat.Struct.Mol.Biol., 28, 2021
7AOZ	Atomic structure of the poxvirus transcription initiation complex in conformation 1 Descriptor: DNA-directed RNA polymerase, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... Authors: Grimm, C, Bartuli, J, Fischer, U. Deposit date: 2020-10-15 Release date: 2021-10-06 Last modified: 2021-10-20 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Structural basis of the complete poxvirus transcription initiation process. Nat.Struct.Mol.Biol., 28, 2021
3EVF	Crystal structure of Me7-GpppA complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine Descriptor: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE Authors: Thompson, A.A, Geiss, B.J, Peersen, O.B. Deposit date: 2008-10-13 Release date: 2009-01-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Analysis of flavivirus NS5 methyltransferase cap binding. J.Mol.Biol., 385, 2009
3EVC	Crystal structure of GTP complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine Descriptor: GUANOSINE-5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE Authors: Thompson, A.A, Geiss, B.J, Peersen, O.B. Deposit date: 2008-10-13 Release date: 2009-01-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Analysis of flavivirus NS5 methyltransferase cap binding. J.Mol.Biol., 385, 2009
6PPK	RbgA+45SRbgA complex Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... Authors: Ortega, J. Deposit date: 2019-07-07 Release date: 2019-09-18 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structural consequences of the interaction of RbgA with a 50S ribosomal subunit assembly intermediate. Nucleic Acids Res., 47, 2019
4ID5	HIV-1 reverse transcriptase with bound fragment at the RNase H primer grip site Descriptor: 1-methyl-5-phenyl-1H-pyrazole-4-carboxylic acid, 4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile, DIMETHYL SULFOXIDE, ... Authors: Bauman, J.D, Patel, D, Arnold, E. Deposit date: 2012-12-11 Release date: 2013-02-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Detecting Allosteric Sites of HIV-1 Reverse Transcriptase by X-ray Crystallographic Fragment Screening. J.Med.Chem., 56, 2013
1BOX	N39S MUTANT OF RNASE SA FROM STREPTOMYCES AUREOFACIENS Descriptor: GUANYL-SPECIFIC RIBONUCLEASE SA Authors: Hebert, E.J, Giletto, A, Sevcik, J, Urbanikova, L, Wilson, K.S, Dauter, Z, Pace, C.N. Deposit date: 1998-08-07 Release date: 1999-12-29 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Contribution of a conserved asparagine to the conformational stability of ribonucleases Sa, Ba, and T1. Biochemistry, 37, 1998
3BHO	Crystal Structure of the 25kDa Subunit of Human Cleavage factor Im with Ap4A Descriptor: BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Cleavage and polyadenylation specificity factor subunit 5 Authors: Coseno, M, Doublie, S. Deposit date: 2007-11-28 Release date: 2008-02-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of the 25 kDa subunit of human cleavage factor Im. Nucleic Acids Res., 36, 2008
8OPB	Virus-like Particle based on PVY coat protein with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
7AEP	Solution structure of U1-A RRM2 (190-282) Descriptor: U1 small nuclear ribonucleoprotein A Authors: Campagne, S, Allain, F.H. Deposit date: 2020-09-18 Release date: 2021-02-03 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: An in vitro reconstituted U1 snRNP allows the study of the disordered regions of the particle and the interactions with proteins and ligands. Nucleic Acids Res., 49, 2021
1YZ7	Crystal structure of a C-terminal segment of the alpha subunit of aIF2 from Pyrococcus abyssi Descriptor: Probable translation initiation factor 2 alpha subunit Authors: Yatime, L, Schmitt, E, Blanquet, S, Mechulam, Y. Deposit date: 2005-02-28 Release date: 2005-06-28 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Structure-Function Relationships of the Intact aIF2alpha Subunit from the Archaeon Pyrococcus abyssi Biochemistry, 44, 2005
1YZ6	Crystal structure of intact alpha subunit of aIF2 from Pyrococcus abyssi Descriptor: Probable translation initiation factor 2 alpha subunit Authors: Yatime, L, Schmitt, E, Blanquet, S, Mechulam, Y. Deposit date: 2005-02-28 Release date: 2005-06-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.37 Å) Cite: Structure-Function Relationships of the Intact aIF2alpha Subunit from the Archaeon Pyrococcus abyssi Biochemistry, 44, 2005
5N8X	Trigonal structure of mutant V173I of 3D polymerase from Foot-and-Mouth Disease Virus Descriptor: 3D polymerase, GLYCEROL, MANGANESE (II) ION Authors: Ferrer-Orta, C, Verdaguer, N. Deposit date: 2017-02-24 Release date: 2017-05-10 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Molecular and Functional Bases of Selection against a Mutation Bias in an RNA Virus. Genome Biol Evol, 9, 2017
6S2W	Structure of S. pombe Erh1, a protein important for meiotic mRNA decay in mitosis and meiosis progression. Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ... Authors: Hazra, D, Graille, M. Deposit date: 2019-06-22 Release date: 2020-02-12 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Formation of S. pombe Erh1 homodimer mediates gametogenic gene silencing and meiosis progression. Sci Rep, 10, 2020
2Z70	E.coli RNase 1 in complex with d(CGCGATCGCG) Descriptor: CALCIUM ION, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DTP*DCP*DGP*DCP*DG)-3'), Ribonuclease I Authors: Martinez-Rodriguez, S, Loris, R, Messens, J. Deposit date: 2007-08-09 Release date: 2008-06-24 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Nonspecific base recognition mediated by water bridges and hydrophobic stacking in ribonuclease I from Escherichia coli Protein Sci., 17, 2008
3EVE	Crystal structure of GpppA complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine Descriptor: GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE Authors: Thompson, A.A. Deposit date: 2008-10-13 Release date: 2009-01-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Analysis of flavivirus NS5 methyltransferase cap binding. J.Mol.Biol., 385, 2009
4Z9P	Crystal structure of Ebola virus nucleoprotein core domain at 1.8A resolution Descriptor: Nucleoprotein Authors: Guo, Y, Dong, S.S, Yang, P, Li, G.B, Liu, B.C, Yang, C, Rao, Z.H. Deposit date: 2015-04-11 Release date: 2015-05-20 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.792 Å) Cite: Insight into the Ebola virus nucleocapsid assembly mechanism: crystal structure of Ebola virus nucleoprotein core domain at 1.8 A resolution. Protein Cell, 6, 2015
3T5V	Sac3:Thp1:Sem1 complex Descriptor: 26S proteasome complex subunit SEM1, Nuclear mRNA export protein SAC3, Nuclear mRNA export protein THP1 Authors: Stewart, M, Ellisdon, A.M. Deposit date: 2011-07-28 Release date: 2012-02-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural basis for the assembly and nucleic acid binding of the TREX-2 transcription-export complex. Nat.Struct.Mol.Biol., 19, 2012
3EVD	Crystal structure of GTP complex of yellow fever virus methyltransferase and S-adenosyl-L-homocysteine Descriptor: GUANOSINE-5'-TRIPHOSPHATE, RNA-directed RNA polymerase NS5, S-ADENOSYL-L-HOMOCYSTEINE Authors: Thompson, A.A, Geiss, B.J, Peersen, O.B. Deposit date: 2008-10-13 Release date: 2009-01-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Analysis of flavivirus NS5 methyltransferase cap binding. J.Mol.Biol., 385, 2009
5E2X	The crystal structure of the C-terminal domain of Ebola (Tai Forest) nucleoprotein Descriptor: NONAETHYLENE GLYCOL, NP Authors: Baker, L.E, Handing, K.B, Derewenda, U, Utepbergenov, D, Derewenda, Z.S. Deposit date: 2015-10-01 Release date: 2015-10-21 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Molecular architecture of the nucleoprotein C-terminal domain from the Ebola and Marburg viruses. Acta Crystallogr D Struct Biol, 72, 2016
3TDL	Structure of human serum albumin in complex with DAUDA Descriptor: 11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid, MYRISTIC ACID, Serum albumin Authors: Wang, Y, Luo, Z, Shi, X, Wang, H, Nie, L. Deposit date: 2011-08-11 Release date: 2012-06-27 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A fluorescent fatty acid probe, DAUDA, selectively displaces two myristates bound in human serum albumin Protein Sci., 20, 2011
1F5T	DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE Descriptor: 43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE, DIPHTHERIA TOXIN REPRESSOR, NICKEL (II) ION Authors: Chen, S, White, A, Love, J, Murphy, J.R, Ringe, D. Deposit date: 2000-06-15 Release date: 2000-09-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3 Å) Cite: Methyl groups of thymine bases are important for nucleic acid recognition by DtxR. Biochemistry, 39, 2000
5BY8	The structure of Rpf2-Rrs1 explains its role in ribosome biogenesis Descriptor: Rpf2, Rrs1 Authors: Kharde, S, Calvino, F.R, Gumiero, A, Wild, K, Sinning, I. Deposit date: 2015-06-10 Release date: 2015-07-08 Last modified: 2015-08-26 Method: X-RAY DIFFRACTION (1.515 Å) Cite: The structure of Rpf2-Rrs1 explains its role in ribosome biogenesis. Nucleic Acids Res., 43, 2015
3F23	Crystal structure of Zalpha in complex with d(CGGCCG) Descriptor: DNA (5'-D(*DTP*DCP*DGP*DGP*DCP*DCP*DG)-3'), Double-stranded RNA-specific adenosine deaminase Authors: Ha, S.C, Choi, J, Kim, K.K. Deposit date: 2008-10-28 Release date: 2008-12-30 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.7 Å) Cite: The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZ{alpha}ADAR1 Nucleic Acids Res., 37, 2009
1XNQ	Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center Descriptor: 16S ribosomal RNA, Anticodon tRNA, MAGNESIUM ION, ... Authors: Murphy, F.V, Ramakrishnan, V. Deposit date: 2004-10-05 Release date: 2004-12-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.05 Å) Cite: Structure of a purine-purine wobble base pair in the decoding center of the ribosome. Nat.Struct.Mol.Biol., 11, 2004

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