Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6MTB
DownloadVisualize
BU of 6mtb by Molmil
Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
Authors:Brown, A, Baird, M.R, Yip, M.C.J, Murray, J, Shao, S.
Deposit date:2018-10-19
Release date:2018-11-21
Last modified:2019-05-15
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structures of translationally inactive mammalian ribosomes.
Elife, 7, 2018
7CPV
DownloadVisualize
BU of 7cpv by Molmil
Cryo-EM structure of 80S ribosome from mouse testis
Descriptor: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S13, ...
Authors:Huo, Y.G, He, X, Jiang, T, Qin, Y, Guo, X.J, Sha, J.H.
Deposit date:2020-08-08
Release date:2022-02-02
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:A male germ-cell-specific ribosome controls male fertility.
Nature, 612, 2022
7CPU
DownloadVisualize
BU of 7cpu by Molmil
Cryo-EM structure of 80S ribosome from mouse kidney
Descriptor: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S13, ...
Authors:Huo, Y.G, He, X, Jiang, T, Qin, Y, Guo, X.J, Sha, J.H.
Deposit date:2020-08-08
Release date:2022-02-02
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:A male germ-cell-specific ribosome controls male fertility.
Nature, 612, 2022
6MTC
DownloadVisualize
BU of 6mtc by Molmil
Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
Authors:Brown, A, Baird, M.R, Yip, M.C.J, Murray, J, Shao, S.
Deposit date:2018-10-19
Release date:2018-11-21
Last modified:2019-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of translationally inactive mammalian ribosomes.
Elife, 7, 2018
6MTD
DownloadVisualize
BU of 6mtd by Molmil
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Descriptor: 18S rRNA, 28S rRNA, 5.8S rRNA, ...
Authors:Brown, A, Baird, M.R, Yip, M.C.J, Murray, J, Shao, S.
Deposit date:2018-10-19
Release date:2018-11-21
Last modified:2019-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structures of translationally inactive mammalian ribosomes.
Elife, 7, 2018
4QBG
DownloadVisualize
BU of 4qbg by Molmil
Crystal structure of a stable adenylate kinase variant AKlse4
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Moon, S, Bae, E.
Deposit date:2014-05-08
Release date:2014-06-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Effectiveness and limitations of local structural entropy optimization in the thermal stabilization of mesophilic and thermophilic adenylate kinases.
Proteins, 82, 2014
2X9N
DownloadVisualize
BU of 2x9n by Molmil
High resolution structure of TbPTR1 in complex with cyromazine
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, ACETATE ION, DITHIANE DIOL, ...
Authors:Dawson, A, Tulloch, L.B, Barrack, K.L, Hunter, W.N.
Deposit date:2010-03-23
Release date:2010-06-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:High-Resolution Structures of Trypanosoma Brucei Pteridine Reductase Ligand Complexes Inform on the Placement of New Molecular Entities in the Active Site of a Potential Drug Target
Acta Crystallogr.,Sect.D, 66, 2010
6MTE
DownloadVisualize
BU of 6mte by Molmil
Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Descriptor: 18S rRNA, 28S rRNA, 5.8S rRNA, ...
Authors:Brown, A, Baird, M.R, Yip, M.C.J, Murray, J, Shao, S.
Deposit date:2018-10-19
Release date:2018-11-21
Last modified:2019-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of translationally inactive mammalian ribosomes.
Elife, 7, 2018
2X26
DownloadVisualize
BU of 2x26 by Molmil
Crystal structure of the periplasmic aliphatic sulphonate binding protein SsuA from Escherichia coli
Descriptor: GLYCEROL, PERIPLASMIC ALIPHATIC SULPHONATES-BINDING PROTEIN
Authors:Beale, J, Lee, S, Iwata, S, Beis, K.
Deposit date:2010-01-11
Release date:2010-04-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of the Aliphatic Sulfonate-Binding Protein Ssua from Escherichia Coli
Acta Crystallogr.,Sect.F, 66, 2010
6MZ3
DownloadVisualize
BU of 6mz3 by Molmil
mCherry pH sensitive mutant - M66T (mCherryTYG)
Descriptor: PAmCherry1 protein
Authors:Haynes, E.P, Tantama, M.
Deposit date:2018-11-03
Release date:2019-10-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.088 Å)
Cite:Quantifying Acute Fuel and Respiration Dependent pH Homeostasis in Live Cells Using the mCherryTYG Mutant as a Fluorescence Lifetime Sensor.
Anal.Chem., 91, 2019
4PL0
DownloadVisualize
BU of 4pl0 by Molmil
Crystal structure of the antibacterial peptide ABC transporter McjD in an outward occluded state
Descriptor: MAGNESIUM ION, Microcin-J25 export ATP-binding/permease protein McjD, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Choudhury, H.G, Beis, K.
Deposit date:2014-05-15
Release date:2014-06-18
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of an antibacterial peptide ATP-binding cassette transporter in a novel outward occluded state.
Proc.Natl.Acad.Sci.USA, 111, 2014
7E9V
DownloadVisualize
BU of 7e9v by Molmil
The Crystal Structure of human UMP-CMP kinase from Biortus.
Descriptor: SULFATE ION, UMP-CMP kinase
Authors:Wang, F, Lin, D, Wang, R, Wei, X, Shen, Z, Wang, M.
Deposit date:2021-03-05
Release date:2021-03-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Crystal Structure of human UMP-CMP kinase from Biortus.
To Be Published
3A28
DownloadVisualize
BU of 3a28 by Molmil
Crystal structure of L-2,3-butanediol dehydrogenase
Descriptor: BETA-MERCAPTOETHANOL, L-2.3-butanediol dehydrogenase, MAGNESIUM ION, ...
Authors:Otagiri, M, Kurisu, G, Ui, S, Kusunoki, M.
Deposit date:2009-05-02
Release date:2009-12-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for chiral substrate recognition by two 2,3-butanediol dehydrogenases
Febs Lett., 584, 2010
7D4I
DownloadVisualize
BU of 7d4i by Molmil
Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ...
Authors:Du, Y, Zhang, J, An, W, Ye, K.
Deposit date:2020-09-24
Release date:2021-10-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structure of 90S small ribosomal precursors complex with Dhr1
To Be Published
7D63
DownloadVisualize
BU of 7d63 by Molmil
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ...
Authors:Du, Y, Zhang, J, An, W, Ye, K.
Deposit date:2020-09-29
Release date:2021-10-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (12.3 Å)
Cite:Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
To Be Published
7D5T
DownloadVisualize
BU of 7d5t by Molmil
Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)
Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ...
Authors:Du, Y, Zhang, J, An, W, Ye, K.
Deposit date:2020-09-28
Release date:2021-10-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)
To Be Published
7FC2
DownloadVisualize
BU of 7fc2 by Molmil
Crystal Structure of GPX6
Descriptor: Glutathione peroxidase 6, SULFATE ION
Authors:Sun, J.
Deposit date:2021-07-13
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of GPX6
To Be Published
6OKK
DownloadVisualize
BU of 6okk by Molmil
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
Descriptor: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Wong, W, Scheres, S.H.W.
Deposit date:2019-04-13
Release date:2019-05-22
Last modified:2020-01-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine.
Elife, 3, 2014
2Z6Q
DownloadVisualize
BU of 2z6q by Molmil
Ternary structure of Arg165Ala M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcy
Descriptor: 2'-DEOXYCYTIDINE, DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DTP*DC)-3'), ...
Authors:Shieh, F.K.
Deposit date:2007-08-08
Release date:2007-08-28
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:The role of Arg165 towards base flipping, base stabilization and catalysis in M.HhaI
J.Mol.Biol., 362, 2006
4QNK
DownloadVisualize
BU of 4qnk by Molmil
The structure of wt A. thaliana IGPD2 in complex with Mn2+ and phosphate
Descriptor: 1,2-ETHANEDIOL, Imidazoleglycerol-phosphate dehydratase 2, chloroplastic, ...
Authors:Bisson, C, Britton, K.L, Sedelnikova, S.E, Rodgers, H.F, Eadsforth, T.C, Viner, R, Hawkes, T.R, Baker, P.J, Rice, D.W.
Deposit date:2014-06-18
Release date:2015-06-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.
Structure, 23, 2015
7EQ4
DownloadVisualize
BU of 7eq4 by Molmil
Crystal Structure of the N-terminus of Nonstructural protein 1 from SARS-CoV-2
Descriptor: Host translation inhibitor nsp1
Authors:Liu, Y, Ke, Z, Hu, H, Zhao, K, Xiao, J, Xia, Y, Li, Y.
Deposit date:2021-04-29
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural Basis and Function of the N Terminus of SARS-CoV-2 Nonstructural Protein 1.
Microbiol Spectr, 9, 2021
2YZD
DownloadVisualize
BU of 2yzd by Molmil
Crystal structure of uricase from Arthrobacter globiformis in complex with 8-azaxanthin (inhibitor)
Descriptor: 8-AZAXANTHINE, Uricase
Authors:Juan, E.C.M, Hossain, M.T, Hoque, M.M, Suzuki, K, Sekiguchi, T, Takenaka, A.
Deposit date:2007-05-05
Release date:2008-05-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Trapping of the uric acid substrate in the crystal structure of urate oxidase from Arthrobacter globiformis
To be Published
2Z6U
DownloadVisualize
BU of 2z6u by Molmil
Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy
Descriptor: DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), Modification methylase HhaI, ...
Authors:Shieh, F.K.
Deposit date:2007-08-09
Release date:2007-11-20
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:AdoMet-dependent Methyl-transfer: Glu(119) Is Essential for DNA C5-Cytosine Methyltransferase M.HhaI
J.Mol.Biol., 373, 2007
7EEB
DownloadVisualize
BU of 7eeb by Molmil
Structure of the CatSpermasome
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Wu, J.P, Ke, M.
Deposit date:2021-03-18
Release date:2021-07-28
Last modified:2021-08-11
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structure of a mammalian sperm cation channel complex.
Nature, 595, 2021
7EDJ
DownloadVisualize
BU of 7edj by Molmil
Cryo-EM structure of SARS-CoV-2 S-UK variant (B.1.1.7) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2 (ACE2) ectodomain, ...
Authors:Yang, T.J, Yu, P.Y, Chang, Y.C, Wu, H.C, Hsu, S.T.D.
Deposit date:2021-03-16
Release date:2021-09-01
Last modified:2022-01-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Effect of SARS-CoV-2 B.1.1.7 mutations on spike protein structure and function.
Nat.Struct.Mol.Biol., 28, 2021

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon