Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5INK
DownloadVisualize
BU of 5ink by Molmil
Mouse Tdp2 reaction product (5'-phosphorylated DNA)-abasic/THF-Mg2+ complex
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, DNA (5'-D(P*(3DR)P*CP*GP*AP*AP*TP*TP*CP*G)-3'), ...
Authors:Schellenberg, M.J, Williams, R.S.
Deposit date:2016-03-07
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.
Nucleic Acids Res., 44, 2016
5INM
DownloadVisualize
BU of 5inm by Molmil
Mouse Tdp2 protein, apo state with variable DNA-binding grasp conformations
Descriptor: GLYCEROL, MAGNESIUM ION, SULFATE ION, ...
Authors:Schellenberg, M.J, Williams, R.S.
Deposit date:2016-03-07
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.
Nucleic Acids Res., 44, 2016
5IUK
DownloadVisualize
BU of 5iuk by Molmil
Crystal structure of the DesK-DesR complex in the phosphotransfer state with high Mg2+ (150 mM)
Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ...
Authors:Trajtenberg, F, Imelio, J.A, Larrieux, N, Buschiazzo, A.
Deposit date:2016-03-18
Release date:2016-12-21
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action.
Elife, 5, 2016
2BTG
DownloadVisualize
BU of 2btg by Molmil
peripheral-subunit binding domains from mesophilic,thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions
Descriptor: DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX
Authors:Ferguson, N, Allen, M.D.
Deposit date:2005-05-31
Release date:2006-05-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Ultra-Fast Barrier-Limited Folding in the Peripheral Subunit-Binding Domain Family.
J.Mol.Biol., 353, 2005
2BTH
DownloadVisualize
BU of 2bth by Molmil
Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions
Descriptor: DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX
Authors:Ferguson, N, Allen, M.D.
Deposit date:2005-05-31
Release date:2006-05-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Ultra-Fast Barrier-Limited Folding in the Peripheral Subunit-Binding Domain Family.
J.Mol.Biol., 353, 2005
7NNP
DownloadVisualize
BU of 7nnp by Molmil
Rb-loaded cryo-EM structure of the E1-ATP KdpFABC complex.
Descriptor: CARDIOLIPIN, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Potassium-transporting ATPase ATP-binding subunit, ...
Authors:Silberberg, J.M, Corey, R.A, Hielkema, L, Stock, C, Stansfeld, P.J, Paulino, C, Haenelt, I.
Deposit date:2021-02-25
Release date:2021-07-28
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Deciphering ion transport and ATPase coupling in the intersubunit tunnel of KdpFABC.
Nat Commun, 12, 2021
5INO
DownloadVisualize
BU of 5ino by Molmil
Human Tdp2 reaction product (5'-phosphorylated DNA)-Mg2+ complex
Descriptor: DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3'), SULFATE ION, Tyrosyl-DNA phosphodiesterase 2
Authors:Schellenberg, M.J, Williams, R.S.
Deposit date:2016-03-07
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.205 Å)
Cite:Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.
Nucleic Acids Res., 44, 2016
5INN
DownloadVisualize
BU of 5inn by Molmil
Mouse Tdp2 D358N protein, apo state with increased disorder amongst variable DNA-binding grasp conformations
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Schellenberg, M.J, Appel, C.D, Williams, R.S.
Deposit date:2016-03-07
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.
Nucleic Acids Res., 44, 2016
3JQH
DownloadVisualize
BU of 3jqh by Molmil
Structure of the neck region of the glycan-binding receptor DC-SIGNR
Descriptor: C-type lectin domain family 4 member M
Authors:Feinberg, H, Tso, C.K.W, Taylor, M.E, Drickamer, K, Weis, W.I.
Deposit date:2009-09-06
Release date:2009-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Segmented helical structure of the neck region of the glycan-binding receptor DC-SIGNR.
J.Mol.Biol., 394, 2009
5IUM
DownloadVisualize
BU of 5ium by Molmil
Crystal structure of phosphorylated DesKC
Descriptor: GLYCEROL, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Trajtenberg, F, Buschiazzo, A.
Deposit date:2016-03-18
Release date:2016-12-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.162 Å)
Cite:Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action.
Elife, 5, 2016
3JS1
DownloadVisualize
BU of 3js1 by Molmil
Crystal structure of adipocyte fatty acid binding protein covalently modified with 4-hydroxy-2-nonenal
Descriptor: Adipocyte fatty acid-binding protein, PHOSPHATE ION
Authors:Hellberg, K, Grimsrud, P.A, Kruse, A.C, Banaszak, L.J, Ohlendorf, D.H, Bernlohr, D.A.
Deposit date:2009-09-09
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:X-ray crystallographic analysis of adipocyte fatty acid binding protein (aP2) modified with 4-hydroxy-2-nonenal.
Protein Sci., 19, 2010
1KTV
DownloadVisualize
BU of 1ktv by Molmil
Crystal Structure of Elongation Factor G Dimer Without Nucleotide
Descriptor: ELONGATION FACTOR G
Authors:Laurberg, M, Kristensen, O, Su, X.D, Liljas, A.
Deposit date:2002-01-17
Release date:2003-12-23
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:A New Crystal Form of Thermus thermophilus Elongation Factor G Indicates Crystallographic Limitations Imposed on Molecular Flexibility
To be Published
2B98
DownloadVisualize
BU of 2b98 by Molmil
Crystal Structure of an archaeal pentameric riboflavin synthase
Descriptor: Riboflavin synthase
Authors:Ramsperger, A, Augustin, M, Schott, A.K, Gerhardt, S, Krojer, T, Eisenreich, W, Illarionov, B, Cushman, M, Bacher, A, Huber, R, Fischer, M.
Deposit date:2005-10-11
Release date:2005-11-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of an Archaeal Pentameric Riboflavin Synthase in Complex with a Substrate Analog Inhibitor: stereochemical implications
J.Biol.Chem., 281, 2006
2BBC
DownloadVisualize
BU of 2bbc by Molmil
Structure of Cobalamin-complexed Bovine Transcobalamin in trigonal crystal form
Descriptor: CHLORIDE ION, COBALAMIN, Transcobalamin II
Authors:Wuerges, J, Garau, G, Geremia, S, Fedosov, S.N, Petersen, T.E, Randaccio, L.
Deposit date:2005-10-17
Release date:2006-04-04
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for mammalian vitamin B12 transport by transcobalamin.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2V24
DownloadVisualize
BU of 2v24 by Molmil
Structure of the human SPRY domain-containing SOCS box protein SSB-4
Descriptor: NICKEL (II) ION, SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 4
Authors:Uppenberg, J, Bullock, A, Keates, T, Savitsky, P, Pike, A.C.W, Ugochukwu, E, Bunkoczi, G, von Delft, F, Weigelt, J, Arrowsmith, C.H, Edwards, A, Sundstrom, M, Knapp, S.
Deposit date:2007-05-31
Release date:2007-07-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for Par-4 Recognition by the Spry Domain-and Socs Box-Containing Proteins Spsb1, Spsb2, and Spsb4.
J.Mol.Biol., 401, 2010
2B63
DownloadVisualize
BU of 2b63 by Molmil
Complete RNA Polymerase II-RNA inhibitor complex
Descriptor: 31-MER, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, ...
Authors:Kettenberger, H, Eisenfuehr, A, Brueckner, F, Theis, M, Famulok, M, Cramer, P.
Deposit date:2005-09-30
Release date:2005-12-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs
Nat.Struct.Mol.Biol., 13, 2006
3JSQ
DownloadVisualize
BU of 3jsq by Molmil
Crystal structure of adipocyte fatty acid binding protein non-covalently modified with 4-hydroxy-2-nonenal
Descriptor: (2E,4R)-4-HYDROXYNON-2-ENAL, Adipocyte fatty acid-binding protein, CHLORIDE ION, ...
Authors:Hellberg, K, Grimsrud, P.A, Kruse, A.C, Banaszak, L.J, Ohlendorf, D.H, Bernlohr, D.A.
Deposit date:2009-09-10
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray crystallographic analysis of adipocyte fatty acid binding protein (aP2) modified with 4-hydroxy-2-nonenal.
Protein Sci., 19, 2010
3J8C
DownloadVisualize
BU of 3j8c by Molmil
Model of the human eIF3 PCI-MPN octamer docked into the 43S EM map
Descriptor: Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit C, Eukaryotic translation initiation factor 3 subunit E, ...
Authors:Erzberger, J.P, Ban, N.
Deposit date:2014-10-08
Release date:2014-10-22
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (11.6 Å)
Cite:Molecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex.
Cell(Cambridge,Mass.), 158, 2014
2BDW
DownloadVisualize
BU of 2bdw by Molmil
Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Descriptor: Hypothetical protein K11E8.1d
Authors:Rosenberg, O.S, Kuriyan, J.
Deposit date:2005-10-20
Release date:2005-12-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Autoinhibited Kinase Domain of CaMKII and SAXS Analysis of the Holoenzyme
Cell(Cambridge,Mass.), 123, 2005
3J8B
DownloadVisualize
BU of 3j8b by Molmil
Model of the human eIF3 PCI-MPN octamer docked into the 43S-HCV IRES EM map
Descriptor: Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit C, Eukaryotic translation initiation factor 3 subunit E, ...
Authors:Erzberger, J.P, Ban, N.
Deposit date:2014-10-08
Release date:2014-10-22
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9.3 Å)
Cite:Molecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex.
Cell(Cambridge,Mass.), 158, 2014
5IUJ
DownloadVisualize
BU of 5iuj by Molmil
Crystal structure of the DesK-DesR complex in the phosphotransfer state with low Mg2+ (20 mM)
Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ...
Authors:Trajtenberg, F, Imelio, J.A, Larrieux, N, Buschiazzo, A.
Deposit date:2016-03-18
Release date:2016-12-21
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action.
Elife, 5, 2016
5IUL
DownloadVisualize
BU of 5iul by Molmil
Crystal structure of the DesK-DesR complex in the phosphotransfer state with high Mg2+ (150 mM) and BeF3
Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ...
Authors:Trajtenberg, F, Imelio, J.A, Larrieux, N, Buschiazzo, A.
Deposit date:2016-03-18
Release date:2016-12-21
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.153 Å)
Cite:Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action.
Elife, 5, 2016
2BB6
DownloadVisualize
BU of 2bb6 by Molmil
Structure of Cobalamin-complexed Bovine Transcobalamin in Monoclinic Crystal Form
Descriptor: CHLORIDE ION, COBALAMIN, Transcobalamin II
Authors:Wuerges, J, Garau, G, Geremia, S, Fedosov, S.N, Petersen, T.E, Randaccio, L.
Deposit date:2005-10-17
Release date:2006-04-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for mammalian vitamin B12 transport by transcobalamin.
Proc.Natl.Acad.Sci.Usa, 103, 2006
5HKK
DownloadVisualize
BU of 5hkk by Molmil
Caldalaklibacillus thermarum F1-ATPase (wild type)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Ferguson, S.A, Cook, G.M, Montgomery, M.G, Leslie, A.G.W, Walker, J.E.
Deposit date:2016-01-14
Release date:2016-09-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:Regulation of the thermoalkaliphilic F1-ATPase from Caldalkalibacillus thermarum.
Proc.Natl.Acad.Sci.USA, 113, 2016
3KVE
DownloadVisualize
BU of 3kve by Molmil
Structure of native L-amino acid oxidase from Vipera ammodytes ammodytes: stabilization of the quaternary structure by divalent ions and structural changes in the dynamic active site
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase, ...
Authors:Gergiova, D, Murakami, M.T, Perbandt, M, Arni, R.K, Betzel, C.
Deposit date:2009-11-30
Release date:2010-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structure of native L-amino acid oxidase from Vipera ammodytes ammodytes: stabilization of the quaternary structure by divalent ions and structural changes in the dynamic active site
To be Published

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon