PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

---

3GTG	Backtracked RNA polymerase II complex with 12mer RNA Descriptor: DNA (28-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Wang, D, Bushnell, D.A, Huang, X, Westover, K.D, Levitt, M, Kornberg, R.D. Deposit date: 2009-03-27 Release date: 2009-06-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.78 Å) Cite: Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science, 324, 2009
5X06	DNA replication regulation protein Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit beta, DnaA regulatory inactivator Hda, ... Authors: Kim, J, Cho, Y. Deposit date: 2017-01-20 Release date: 2018-01-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.237 Å) Cite: Replication regulation protein To Be Published
4Y97	Crystal Structure of human Pol alpha B-subunit in complex with C-terminal domain of catalytic subunit Descriptor: DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, ZINC ION Authors: Suwa, Y, Gu, J, Baranovskiy, A.G, Babayeva, N.D, Tahirov, T.H. Deposit date: 2015-02-17 Release date: 2015-04-15 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Crystal Structure of the Human Pol alpha B Subunit in Complex with the C-terminal Domain of the Catalytic Subunit. J.Biol.Chem., 290, 2015
3S17	RNA Polymerase II Initiation Complex with a 9-nt RNA Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-14 Release date: 2011-08-10 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011
4IVZ	A Y37F mutant of C.Esp1396I bound to its highest affinity operator site OM Descriptor: DNA (5'-D(*AP*TP*GP*TP*AP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*TP*GP*TP*CP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*TP*AP*CP*A)-3'), Regulatory protein Authors: Martin, R.N.A, McGeehan, J.E, Kneale, G.G. Deposit date: 2013-01-23 Release date: 2014-01-29 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I. Plos One, 9, 2014
8HSH	Thermus thermophilus RNA polymerase coreenzyme Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Murayama, Y, Ehara, H, Sekine, S. Deposit date: 2022-12-19 Release date: 2023-05-03 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus. Sci Adv, 9, 2023
7D7D	CryoEM structure of gp45-dependent transcription activation complex Descriptor: DNA (nontemplate strand), DNA (template strand), DNA polymerase clamp, ... Authors: Shi, J, Wen, A, Jin, S, Feng, Y. Deposit date: 2020-10-03 Release date: 2021-01-20 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Transcription activation by a sliding clamp. Nat Commun, 12, 2021
3RAQ	Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
2R5Y	Structure of Scr/Exd complex bound to a consensus Hox-Exd site Descriptor: DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DTP*DAP*DGP*DAP*DG)-3'), Homeobox protein extradenticle, ... Authors: Aggarwal, A.K, Passner, J.M, Jain, R. Deposit date: 2007-09-04 Release date: 2008-02-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Functional specificity of a Hox protein mediated by the recognition of minor groove structure Cell(Cambridge,Mass.), 131, 2007
2MAP	Solution structure of the complex formed by the region 2 of E. coli sigmaE and its cognate -10 promoter element non template strand TGTCAAA. Descriptor: DNA, RNA polymerase sigma factor Authors: Campagne, S, Vorholt, J.A, Allain, F.H.-T. Deposit date: 2013-07-16 Release date: 2014-02-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural basis for -10 promoter element melting by environmentally induced sigma factors. Nat.Struct.Mol.Biol., 21, 2014
6PW2	Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr Virus Dyad Symmetry Minimal Origin of Replication Descriptor: DNA (62-MER), DNA (62-MER) complementary DNA strand, Epstein-Barr nuclear antigen 1 Authors: Messick, T.E, Malecka, K.A, Lieberman, P.M. Deposit date: 2019-07-22 Release date: 2019-08-28 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.01 Å) Cite: Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr Virus Dyad Symmetry Minimal Origin of Replication. J.Virol., 93, 2019
8FFZ	TFIIIA-TFIIIC-Brf1-TBP complex bound to 5S rRNA gene Descriptor: DNA (151-MER), Transcription factor IIIA, Transcription factor IIIB 70 kDa subunit,TATA-box-binding protein, ... Authors: Talyzina, A, He, Y. Deposit date: 2022-12-11 Release date: 2023-06-21 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural basis of TFIIIC-dependent RNA polymerase III transcription initiation. Mol.Cell, 83, 2023
6YOV	OCT4-SOX2-bound nucleosome - SHL+6 Descriptor: DNA (142-MER), Green fluorescent protein,POU domain, class 5, ... Authors: Michael, A.K, Kempf, G, Cavadini, S, Bunker, R.D, Thoma, N.H. Deposit date: 2020-04-15 Release date: 2020-05-06 Last modified: 2020-07-08 Method: ELECTRON MICROSCOPY (3.42 Å) Cite: Mechanisms of OCT4-SOX2 motif readout on nucleosomes. Science, 368, 2020
4V4K	Bacteriophage P22 Portal Protein bound to middle Tail Factor GP4. This file contain the second biological assembly Descriptor: PACKAGED DNA STABILIZATION PROTEIN GP4, PORTAL PROTEIN Authors: Olia, A.S, Cingolani, G. Deposit date: 2010-04-19 Release date: 2014-07-09 Last modified: 2021-10-06 Method: X-RAY DIFFRACTION (3.251 Å) Cite: Three-dimensional structure of a viral genome-delivery portal vertex. Nat.Struct.Mol.Biol., 18, 2011
4GBE	Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with SAH Descriptor: DNA adenine methylase, S-ADENOSYL-L-HOMOCYSTEINE Authors: Harmer, J.E, Roach, P.L. Deposit date: 2012-07-27 Release date: 2014-02-26 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Structural Basis of Selective N-6 adenine methyltransferase Inhibition by Transition State Mimics To be Published
1S77	T7 RNAP product pyrophosphate elongation complex Descriptor: DNA (5'-D(*GP*CP*CP*GP*TP*GP*CP*GP*CP*AP*TP*TP*CP*GP*CP*CP*GP*TP*GP*TP*T)-3'), DNA (5'-D(*TP*TP*TP*AP*CP*GP*TP*TP*GP*CP*GP*CP*AP*CP*GP*GP*C)-3'), DNA-directed RNA polymerase, ... Authors: Yin, Y.W, Steitz, T.A. Deposit date: 2004-01-29 Release date: 2004-03-23 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.69 Å) Cite: The structural mechanism of translocation and helicase activity in T7 RNA polymerase. Cell(Cambridge,Mass.), 116, 2004
4GOL	Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM Descriptor: DNA adenine methylase, S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE Authors: Harmer, J.E, Roach, P.L. Deposit date: 2012-08-20 Release date: 2014-02-26 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.57 Å) Cite: Structural Basis of Selective N-6 adenine methyltransferase Inhibition by Transition State Mimic To be Published
3RZD	RNA Polymerase II Initiation Complex with a 5-nt RNA Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-11 Release date: 2011-08-10 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011
3RZO	RNA Polymerase II Initiation Complex with a 4-nt RNA Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-12 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011
3S1R	RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with GTP Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-16 Release date: 2011-08-10 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011
3S16	RNA Polymerase II Initiation Complex with an 8-nt RNA Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-14 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.241 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011
3S14	RNA Polymerase II Initiation Complex with a 6-nt RNA Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-14 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011
3S1N	RNA Polymerase II Initiation Complex with a 5-nt RNA (variant 2) Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*GP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-15 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011
3S2D	RNA Polymerase II Initiation Complex with a 5-nt RNA containing a 5Br-U Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*AP*CP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-16 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011
3S15	RNA Polymerase II Initiation Complex with a 7-nt RNA Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-14 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011

<510511512513514515516517518519520521522523524525>