PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

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8X5V	BlCas9-sgRNA-target DNA complex Descriptor: 1,2-ETHANEDIOL, BlCas9, CHLORIDE ION, ... Authors: Nakane, T, Nakagawa, R, Yamashita, K, Nishimasu, H, Nureki, O. Deposit date: 2023-11-19 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and engineering of Brevibacillus laterosporus Cas9. Commun Biol, 7, 2024
1CD3	PROCAPSID OF BACTERIOPHAGE PHIX174 Descriptor: PROTEIN (CAPSID PROTEIN GPF), PROTEIN (SCAFFOLDING PROTEIN GPB), PROTEIN (SCAFFOLDING PROTEIN GPD), ... Authors: Rossmann, M.G, Dokland, T. Deposit date: 1999-03-05 Release date: 1999-04-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.5 Å) Cite: The role of scaffolding proteins in the assembly of the small, single-stranded DNA virus phiX174. J.Mol.Biol., 288, 1999
5J3N	C-terminal domain of EcoR124I HsdR subunit fused with the pH-sensitive GFP variant ratiometric pHluorin Descriptor: Green fluorescent protein,HsdR Authors: Grinkevich, P, Iermak, I, Luedtke, N, Mesters, J.R, Ettrich, R, Ludwig, J. Deposit date: 2016-03-31 Release date: 2017-04-12 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding. J. Biol. Chem., 293, 2018
4AAI	THERMOSTABLE PROTEIN FROM HYPERTHERMOPHILIC VIRUS SSV-RH Descriptor: ORF E73 Authors: Schlenker, C, Goel, A, Tripet, B.P, Menon, S, Lawrence, C.M, Copie, V. Deposit date: 2011-12-02 Release date: 2012-01-11 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Structural Studies of E73 from a Hyperthermophilic Archaeal Virus Identify the "Rh3" Domain, an Elaborated Ribbon-Helix- Helix Motif Involved in DNA Recognition. Biochemistry, 51, 2012
6BR7	Beryllium fluorinated receiver domain of BfmR from Acinetobacter baumannii Descriptor: BERYLLIUM TRIFLUORIDE ION, BfmR, MAGNESIUM ION Authors: Milton, M.E, Cavanagh, J. Deposit date: 2017-11-30 Release date: 2018-02-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.86 Å) Cite: The Structure of the Biofilm-controlling Response Regulator BfmR from Acinetobacter baumannii Reveals Details of Its DNA-binding Mechanism. J. Mol. Biol., 430, 2018
5K81	Crystal Structure of a Primate APOBEC3G N-Terminal Domain Descriptor: Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G, ... Authors: Xiao, X, Li, S.-X, Yang, H, Chen, X.S. Deposit date: 2016-05-27 Release date: 2016-08-10 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.006 Å) Cite: Crystal structures of APOBEC3G N-domain alone and its complex with DNA. Nat Commun, 7, 2016
1SQ8	a variant 434 repressor DNA binding domain devoid of hydroxyl groups, NMR, 20 STRUCTURES Descriptor: dh434 Authors: Iwai, H, Wider, G, Wuthrich, K. Deposit date: 2004-03-18 Release date: 2004-07-20 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: NMR Structure of a Variant 434 Repressor DNA-binding Domain Devoid of Hydroxyl Groups J.Biomol.Nmr, 29, 2004
5UIY	Structure of Bromodomain from human BAZ1A Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Bromodomain adjacent to zinc finger domain protein 1A Authors: Oppikofer, M, Sudhamsu, J. Deposit date: 2017-01-16 Release date: 2017-07-12 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.687 Å) Cite: Non-canonical reader modules of BAZ1A promote recovery from DNA damage. Nat Commun, 8, 2017
7C7Y	C-terminal domain of B. cereus TubY Descriptor: Uncharacterized protein Authors: Hayashi, I. Deposit date: 2020-05-27 Release date: 2020-10-28 Last modified: 2021-03-17 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The C-terminal region of the plasmid partitioning protein TubY is a tetramer that can bind membranes and DNA. J.Biol.Chem., 295, 2020
4LU9	Crystal structure of E.coli SbcD at 2.5 angstrom resolution Descriptor: Exonuclease subunit SbcD, GLYCEROL Authors: Liu, S, Tian, L.F, Yan, X.X, Liang, D.C. Deposit date: 2013-07-25 Release date: 2014-08-27 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for DNA recognition and nuclease processing by the Mre11 homologue SbcD in double-strand breaks repair. Acta Crystallogr.,Sect.D, 70, 2014
2PI2	Full-length Replication protein A subunits RPA14 and RPA32 Descriptor: 1,4-DIETHYLENE DIOXIDE, Replication protein A 14 kDa subunit, Replication protein A 32 kDa subunit Authors: Deng, X, Borgstahl, G.E. Deposit date: 2007-04-12 Release date: 2007-10-16 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of the Full-length Human RPA14/32 Complex Gives Insights into the Mechanism of DNA Binding and Complex Formation. J.Mol.Biol., 374, 2007
5EZF	Racemic crystal structures of Pribnow box consensus promoter sequence (Pbca) Descriptor: CALCIUM ION, Complementary strand, Pribnow box template strand Authors: Mandal, P.K, Collie, G.W, Kauffmann, B, Srivastava, S.C, Huc, I. Deposit date: 2015-11-26 Release date: 2016-05-18 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography. Nucleic Acids Res., 44, 2016
5F26	Crystal structures of Pribnow box consensus promoter sequence (P63) Descriptor: Complementary strand, Pribnow box consensus sequence strand Authors: Mandal, P.K, Collie, G.W, Kauffmann, B, Srivastava, S.C, Huc, I. Deposit date: 2015-12-01 Release date: 2016-05-18 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography. Nucleic Acids Res., 44, 2016
3EEO	M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation. Descriptor: 5'-D(P*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3', 5'-D(P*DGP*DTP*DCP*DAP*DGP*(PDI)P*DGP*DCP*DAP*DTP*DGP*DG)-3', Modification methylase HhaI, ... Authors: Porta, J.C, Christman, J.K, Borgstahl, G.E.O. Deposit date: 2008-09-05 Release date: 2010-03-02 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.94 Å) Cite: M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation. To be Published
5EWB	Racemic crystal structures of Pribnow box consensus promoter sequence (P21/c) Descriptor: PRIBNOW BOX CONSENSUS SEQUENCE- NON-TEMPLATE STRAND, PRIBNOW BOX CONSENSUS SEQUENCE- TEMPLATE STRAND Authors: Mandal, P.K, Collie, G.W, Kauffmann, B, Srivastava, S.C, Huc, I. Deposit date: 2015-11-20 Release date: 2016-05-18 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.694 Å) Cite: Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography. Nucleic Acids Res., 44, 2016
1DFA	CRYSTAL STRUCTURE OF PI-SCEI IN C2 SPACE GROUP Descriptor: PI-SCEI ENDONUCLEASE Authors: Hu, D, Crist, M, Duan, X, Quiocho, F.A, Gimble, F.S. Deposit date: 1999-11-18 Release date: 1999-12-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Probing the structure of the PI-SceI-DNA complex by affinity cleavage and affinity photocross-linking. J.Biol.Chem., 275, 2000
2L92	Solution structure of the C-terminal domain of H-NS like protein Bv3F Descriptor: Histone family protein nucleoid-structuring protein H-NS Authors: Li, Y, Xia, B. Deposit date: 2011-01-29 Release date: 2011-06-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins Proc.Natl.Acad.Sci.USA, 108, 2011
1IYJ	STRUCTURE OF A BRCA2-DSS1 COMPLEX Descriptor: Deleted in split hand/split foot protein 1, breast cancer susceptibility Authors: Pavletich, N.P, Jeffrey, P.D, Yang, H.J. Deposit date: 2002-08-28 Release date: 2002-10-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.4 Å) Cite: BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure. Science, 297, 2002
1SD4	Crystal Structure of a SeMet derivative of BlaI at 2.0 A Descriptor: PENICILLINASE REPRESSOR, SULFATE ION Authors: Safo, M.K, Zhao, Q, Musayev, F.N, Robinson, H, Scarsdale, N, Archer, G.L. Deposit date: 2004-02-13 Release date: 2004-08-10 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons J.Bacteriol., 187, 2005
5MMP	E. coli DNA Gyrase B 24 kDa ATPase domain in complex with 1-ethyl-3-[5-pyridin-4-yl-8-(pyridin-3-ylamino)-isoquinolin-3-yl]-urea Descriptor: 1-ethyl-3-[5-pyridin-4-yl-8-(pyridin-3-ylamino)isoquinolin-3-yl]urea, DNA gyrase subunit B Authors: Panchaud, P, Bruyere, T, Blumstein, A.-C, Bur, D, Chambovey, A, Ertel, E.A, Gude, M, Hubschwerlen, C, Jacob, L, Kimmerlin, T, Pfeifer, T, Prade, L, Seiler, P, Ritz, D, Rueedi, G. Deposit date: 2016-12-12 Release date: 2017-04-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Discovery and Optimization of Isoquinoline Ethyl Ureas as Antibacterial Agents. J. Med. Chem., 60, 2017
4OFA	Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis Descriptor: 12-mer DNA(G), 12-mer DNA(T), MAGNESIUM ION, ... Authors: Ouzon-Shubeita, H, Lin, Y.-L, Lee, S. Deposit date: 2014-01-14 Release date: 2015-04-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structure of MBD4 bound to G:T mispair DNA To be Published
1SD6	Crystal Structure of Native MecI at 2.65 A Descriptor: Methicillin resistance regulatory protein mecI Authors: Safo, M.K, Zhao, Q, Musayev, F.N, Robinson, H, Scarsdale, N, Archer, G.L. Deposit date: 2004-02-13 Release date: 2004-02-24 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons J.Bacteriol., 187, 2005
4OFH	Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis Descriptor: 12-mer DNA(O6MeG), 12-mer DNA(T), MAGNESIUM ION, ... Authors: Ouzon-Shubeita, H, Lin, Y.-L, Lee, S. Deposit date: 2014-01-14 Release date: 2015-04-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.22 Å) Cite: Structure of MBD4 bound to O6MeG:T mispair DNA To be Published
4OFE	Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis Descriptor: 12-mer DNA(G), 12-mer DNA(T), MAGNESIUM ION, ... Authors: Ouzon-Shubeita, H, Lin, Y.-L, Lee, S. Deposit date: 2014-01-14 Release date: 2015-04-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structure of R468K/D560N MBD4 bound to G:T mispair DNA To be Published
3VA3	Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) Descriptor: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.714 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012

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