Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4W74
DownloadVisualize
BU of 4w74 by Molmil
Crystal Structure of Full-Length Split GFP Mutant E115C/T118H With Metal Mediated Crystal Contacts, P 1 21 1 Space Group
Descriptor: ZINC ION, fluorescent protein E115C/T118H
Authors:Leibly, D.J, Waldo, G.S, Yeates, T.O.
Deposit date:2014-08-21
Release date:2015-02-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.
Structure, 23, 2015
1TEV
DownloadVisualize
BU of 1tev by Molmil
Crystal structure of the human UMP/CMP kinase in open conformation
Descriptor: SULFATE ION, UMP-CMP kinase
Authors:Segura-Pena, D, Sekulic, N, Ort, S, Konrad, M, Lavie, A.
Deposit date:2004-05-25
Release date:2004-06-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Substrate-induced Conformational Changes in Human UMP/CMP Kinase.
J.Biol.Chem., 279, 2004
6FP9
DownloadVisualize
BU of 6fp9 by Molmil
Crystal structure of anti-mTFP1 DARPin 1238_E11
Descriptor: 1,2-ETHANEDIOL, DARPin 1238_E11, SULFATE ION
Authors:Jakob, R.P, Vigano, M.A, Bieli, D, Matsuda, S, Schaefer, J.V, Pluckthun, A, Affolter, M, Maier, T.
Deposit date:2018-02-09
Release date:2018-10-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:DARPins recognizing mTFP1 as novel reagents forin vitroandin vivoprotein manipulations.
Biol Open, 7, 2018
7O7W
DownloadVisualize
BU of 7o7w by Molmil
Crystal structure of rsEGFP2 mutant V151L in the non-fluorescent off-state the determined by serial femtosecond crystallography at room temperature
Descriptor: Green fluorescent protein
Authors:Hadjidemetriou, K, Coquelle, N, Barends, T.R.M, Schlichting, I, Colletier, J.-P, Weik, M.
Deposit date:2021-04-13
Release date:2022-07-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Rational Control of Off-State Heterogeneity in a Photoswitchable Fluorescent Protein Provides Switching Contrast Enhancement.
Chemphyschem, 23, 2022
8EYW
DownloadVisualize
BU of 8eyw by Molmil
Beetroot dimer bound to ThT
Descriptor: 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, POTASSIUM ION, RNA (49-MER)
Authors:Passalacqua, L.F.M, Ferre-D'Amare, A.R.
Deposit date:2022-10-28
Release date:2023-05-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture.
Nat Commun, 14, 2023
1EMK
DownloadVisualize
BU of 1emk by Molmil
GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Palm, G, Zdanov, A, Wlodawer, A.
Deposit date:1997-03-31
Release date:1997-08-20
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structural basis for spectral variations in green fluorescent protein.
Nat.Struct.Biol., 4, 1997
1NFR
DownloadVisualize
BU of 1nfr by Molmil
Rv2002 gene product from Mycobacterium tuberculosis
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Putative oxidoreductase Rv2002
Authors:Yang, J.K, Park, M.S, Waldo, G.S, Suh, S.W, TB Structural Genomics Consortium (TBSGC)
Deposit date:2002-12-16
Release date:2002-12-30
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Directed evolution approach to a structural genomics project: Rv2002 from Mycobacterium tuberculosis
Proc.Natl.Acad.Sci.USA, 100, 2003
4OWL
DownloadVisualize
BU of 4owl by Molmil
Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin with N-Acetyl-D-Lactosamine Bound
Descriptor: Cytolysin, GLYCEROL, beta-D-galactopyranose, ...
Authors:Kaus, K, Olson, R.
Deposit date:2014-02-02
Release date:2014-05-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Glycan Specificity of the Vibrio vulnificus Hemolysin Lectin Outlines Evolutionary History of Membrane Targeting by a Toxin Family.
J.Mol.Biol., 426, 2014
4X8O
DownloadVisualize
BU of 4x8o by Molmil
Crystal structure of E. coli Adenylate kinase Y171W mutant in complex with inhibitor Ap5a
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ...
Authors:Sauer-Eriksson, A.E, Kovermann, M, Aden, J, Grundstrom, C, Wolf-Watz, M, Sauer, U.H.
Deposit date:2014-12-10
Release date:2015-07-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for catalytically restrictive dynamics of a high-energy enzyme state.
Nat Commun, 6, 2015
1XQM
DownloadVisualize
BU of 1xqm by Molmil
Variations on the GFP chromophore scaffold: A fragmented 5-membered heterocycle revealed in the 2.1A crystal structure of a non-fluorescent chromoprotein
Descriptor: ACETIC ACID, kindling fluorescent protein
Authors:Wilmann, P.G, Petersen, J, Devenish, R.J, Prescott, M, Rossjohn, J.
Deposit date:2004-10-13
Release date:2004-11-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Variations on the GFP chromophore: A polypeptide fragmentation within the chromophore revealed in the 2.1-A crystal structure of a nonfluorescent chromoprotein from Anemonia sulcata
J.Biol.Chem., 280, 2005
8XLD
DownloadVisualize
BU of 8xld by Molmil
Structure of the GFP:GFP-nanobody complex from Biortus.
Descriptor: 1,2-ETHANEDIOL, Nanobody(Staygold-S2G10)-Nanobody(Staygold-S4F1), ZINC ION, ...
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Bao, C.
Deposit date:2023-12-25
Release date:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the GFP:GFP-nanobody complex from Biortus.
To Be Published
1BFP
DownloadVisualize
BU of 1bfp by Molmil
BLUE VARIANT OF GREEN FLUORESCENT PROTEIN
Descriptor: BLUE FLUORESCENT PROTEIN
Authors:Wachter, R.M, Remington, S.J.
Deposit date:1997-04-09
Release date:1997-07-07
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure and photodynamic behavior of the blue emission variant Y66H/Y145F of green fluorescent protein.
Biochemistry, 36, 1997
6UHM
DownloadVisualize
BU of 6uhm by Molmil
Crystal Structure of a Physical Mixture of C148 mGFP and scDNA-1
Descriptor: C148 mGFP
Authors:Winegar, P.W, Hayes, O.G, McMillan, J.R, Figg, C.A, Focia, P.J, Mirkin, C.A.
Deposit date:2019-09-27
Release date:2020-03-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:DNA-Directed Protein Packing within Single Crystals.
Chem, 6, 2020
4IKY
DownloadVisualize
BU of 4iky by Molmil
Crystal structure of peptide transporter POT (E310Q mutant) in complex with sulfate
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Di-tripeptide ABC transporter (Permease), OLEIC ACID, ...
Authors:Doki, S, Kato, H.E, Ishitani, R, Nureki, O.
Deposit date:2012-12-28
Release date:2013-07-10
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT.
Proc.Natl.Acad.Sci.USA, 110, 2013
7A84
DownloadVisualize
BU of 7a84 by Molmil
rsGreen0.7-K206A-F145H partially in the green-off state
Descriptor: Green fluorescent protein
Authors:De Zitter, E, Dedecker, P, Van Meervelt, L.
Deposit date:2020-08-30
Release date:2021-02-17
Last modified:2021-05-05
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*.
Angew.Chem.Int.Ed.Engl., 60, 2021
7A8N
DownloadVisualize
BU of 7a8n by Molmil
rsGreen0.7-K206A-N205L in the green-on state
Descriptor: Green fluorescent protein
Authors:De Zitter, E, Dedecker, P, Van Meervelt, L.
Deposit date:2020-08-30
Release date:2021-02-17
Last modified:2021-05-05
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*.
Angew.Chem.Int.Ed.Engl., 60, 2021
2G3O
DownloadVisualize
BU of 2g3o by Molmil
The 2.1A crystal structure of copGFP
Descriptor: green fluorescent protein 2
Authors:Wilmann, P.G.
Deposit date:2006-02-20
Release date:2006-08-15
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The 2.1A crystal structure of copGFP, a representative member of the copepod clade within the green fluorescent protein superfamily
J.Mol.Biol., 359, 2006
2UZ4
DownloadVisualize
BU of 2uz4 by Molmil
HhaI DNA methyltransferase R165N mutant complex with 13mer GCGC-GMGC oligonucleotide and SAH
Descriptor: 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP *CP*C)-3', 5'-D(*TP*GP*GP*AP*TP*GP*5CMP*GP*CP*TP*GP *AP*C)-3', GLYCEROL, ...
Authors:Daujotyte, D, Leinartaite, L, Grazulis, S.
Deposit date:2007-04-25
Release date:2008-06-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:DNA Methyltransferase R165N Mutant
To be Published
2C9Y
DownloadVisualize
BU of 2c9y by Molmil
Structure of human adenylate kinase 2
Descriptor: 1,2-ETHANEDIOL, ADENYLATE KINASE ISOENZYME 2, MITOCHONDRIAL, ...
Authors:Bunkoczi, G, Filippakopoulos, P, Debreczeni, J.E, Turnbull, A, Papagrigoriou, E, Savitsky, P, Colebrook, S, von Delft, F, Arrowsmith, C, Edwards, A, Sundstrom, M, Weigelt, J, Knapp, S.
Deposit date:2005-12-15
Release date:2006-01-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of Human Adenylate Kinase 2
To be Published
4TZG
DownloadVisualize
BU of 4tzg by Molmil
Crystal structure of eCGP123, an extremely thermostable green fluorescent protein
Descriptor: Fluorescent Protein
Authors:Close, D.W, Don Paul, C, Traore, D.A.K, Wilce, M.C.J, Prescott, M, Bradbury, A.R.M.
Deposit date:2014-07-10
Release date:2014-10-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Thermal green protein, an extremely stable, nonaggregating fluorescent protein created by structure-guided surface engineering.
Proteins, 83, 2015
3URQ
DownloadVisualize
BU of 3urq by Molmil
Crystal Structure of PTE mutant H254G/H257W/L303T/M317L/I106C/F132I/L271I/K185R/I274N/A80V/R67H with cyclohexyl methylphosphonate inhibitor
Descriptor: COBALT (II) ION, IMIDAZOLE, Parathion hydrolase, ...
Authors:Tsai, P, Fox, N.G, Li, Y, Barondeau, D.P, Raushel, F.M.
Deposit date:2011-11-22
Release date:2012-08-01
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents.
Biochemistry, 51, 2012
5X6J
DownloadVisualize
BU of 5x6j by Molmil
Crystal structure of B. globisporus adenylate kinase variant
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION
Authors:Moon, S, Bae, E.
Deposit date:2017-02-22
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability.
Struct Dyn., 6, 2019
2HE3
DownloadVisualize
BU of 2he3 by Molmil
Crystal structure of the selenocysteine to cysteine mutant of human glutathionine peroxidase 2 (GPX2)
Descriptor: CHLORIDE ION, Glutathione peroxidase 2
Authors:Johansson, C, Kavanagh, K.L, Rojkova, A, Gileadi, O, von Delft, F, Arrowsmith, C, Weigelt, J, Sundstrom, M, Edwards, A, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2006-06-21
Release date:2006-07-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the selenocysteine to cysteine mutant of human glutathionine peroxidase 2 (GPX2)
To be Published
1D7K
DownloadVisualize
BU of 1d7k by Molmil
CRYSTAL STRUCTURE OF HUMAN ORNITHINE DECARBOXYLASE AT 2.1 ANGSTROMS RESOLUTION
Descriptor: HUMAN ORNITHINE DECARBOXYLASE
Authors:Almrud, J.J, Oliveira, M.A, Kern, A.D, Grishin, N.V, Phillips, M.A, Hackert, M.L.
Deposit date:1999-10-18
Release date:2000-10-25
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of human ornithine decarboxylase at 2.1 A resolution: structural insights to antizyme binding.
J.Mol.Biol., 295, 2000
4B30
DownloadVisualize
BU of 4b30 by Molmil
Structure of the mutant V44A of the fluorescent protein KillerRed
Descriptor: CHLORIDE ION, GLYCEROL, KILLERRED, ...
Authors:Carpentier, P, de Rosny, E.
Deposit date:2012-07-19
Release date:2013-01-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Gfp-Like Phototransformation Mechanisms in the Cytotoxic Fluorescent Protein Killerred Unraveled by Structural and Spectroscopic Investigations.
J.Am.Chem.Soc., 134, 2012

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon