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3CLJ
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BU of 3clj by Molmil
Structure of the RNA polymerase II CTD-interacting domain of Nrd1
Descriptor: GLYCEROL, Protein NRD1, SULFATE ION
Authors:Vasiljeva, L, Kim, M, Mutschler, H, Buratowski, S, Meinhart, A.
Deposit date:2008-03-19
Release date:2008-07-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain.
Nat.Struct.Mol.Biol., 15, 2008
3CM8
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BU of 3cm8 by Molmil
A RNA polymerase subunit structure from virus
Descriptor: Polymerase acidic protein, peptide from RNA-directed RNA polymerase catalytic subunit
Authors:He, X, Zhou, J, Zeng, Z, Ma, J, Zhang, R, Rao, Z, Liu, Y.
Deposit date:2008-03-21
Release date:2008-07-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.899 Å)
Cite:Crystal structure of the polymerase PAC-PB1N complex from an avian influenza H5N1 virus
Nature, 454, 2008
7B3D
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BU of 7b3d by Molmil
Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with AMP at position -4 (structure 3)
Descriptor: RNA (5'-R(P*CP*UP*AP*CP*GP*CP*AP*GP*UP*G)-3'), RNA (5'-R(P*UP*GP*CP*AP*CP*UP*GP*CP*GP*UP*AP*G)-3'), SARS-CoV-2 RNA-dependent RNA polymerase nsp12, ...
Authors:Kokic, G, Hillen, H.S, Tegunov, D, Dienemann, C, Seitz, F, Schmitzova, J, Farnung, L, Siewert, A, Hoebartner, C, Cramer, P.
Deposit date:2020-11-30
Release date:2020-12-23
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Mechanism of SARS-CoV-2 polymerase stalling by remdesivir.
Nat Commun, 12, 2021
2K9L
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BU of 2k9l by Molmil
Structure of the Core Binding Domain of sigma54
Descriptor: RNA polymerase sigma factor RpoN
Authors:Hong, E, Wemmer, D.
Deposit date:2008-10-19
Release date:2009-05-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the RNA polymerase core-binding domain of sigma(54) reveals a likely conformational fracture point
J.Mol.Biol., 390, 2009
2M4V
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BU of 2m4v by Molmil
Mycobacterium tuberculosis RNA polymerase binding protein A (RbpA) and its interactions with sigma factors
Descriptor: Putative uncharacterized protein
Authors:Bortoluzzi, A, Muskett, F.W, Waters, L.C, Addis, P.W, Rieck, B, Munder, T, Schleier, S, Forti, F, Ghisotti, D, Carr, M.D, O'Hare, H.M.
Deposit date:2013-02-11
Release date:2013-04-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Mycobacterium tuberculosis RNA polymerase-binding protein A (RbpA) and its interactions with sigma factors.
J.Biol.Chem., 288, 2013
1QYP
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BU of 1qyp by Molmil
THERMOCOCCUS CELER RPB9, NMR, 25 STRUCTURES
Descriptor: RNA POLYMERASE II, ZINC ION
Authors:Wang, B, Jones, D.N.M, Kaine, B.P, Weiss, M.A.
Deposit date:1997-08-19
Release date:1997-12-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:High-resolution structure of an archaeal zinc ribbon defines a general architectural motif in eukaryotic RNA polymerases.
Structure, 6, 1998
2K9M
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BU of 2k9m by Molmil
Structure of the Core Binding Domain of sigma54
Descriptor: RNA polymerase sigma factor RpoN
Authors:Hong, E, Wemmer, D.
Deposit date:2008-10-19
Release date:2009-05-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the RNA polymerase core-binding domain of sigma(54) reveals a likely conformational fracture point
J.Mol.Biol., 390, 2009
1F6X
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BU of 1f6x by Molmil
SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE
Descriptor: RNASE P RNA RIBOZYME, P4 DOMAIN
Authors:Schmitz, M, Tinoco Jr, I.
Deposit date:2000-06-23
Release date:2000-10-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA.
RNA, 6, 2000
1F6Z
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BU of 1f6z by Molmil
SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE
Descriptor: RNASE P RNA RIBOZYME, P4 DOMAIN MUTANT
Authors:Schmitz, M, Tinoco Jr, I.
Deposit date:2000-06-24
Release date:2000-10-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA.
RNA, 6, 2000
1F7F
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BU of 1f7f by Molmil
SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE, NMR, ENSEMBLE OF 9 STRUCTURES
Descriptor: RNASE P RNA RIBOZYME, P4 DOMAIN
Authors:Schmitz, M, Tinoco Jr, I.
Deposit date:2000-06-27
Release date:2000-10-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA.
RNA, 6, 2000
1F7G
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BU of 1f7g by Molmil
SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE, ENSEMBLE OF 17 STRUCTURES
Descriptor: RNASE P RNA RIBOZYME, P4 DOMAIN
Authors:Schmitz, M, Tinoco Jr, I.
Deposit date:2000-06-27
Release date:2000-10-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA.
RNA, 6, 2000
8T2P
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BU of 8t2p by Molmil
5TU-t1 - heterodimeric triplet polymerase ribozyme
Descriptor: RNA (135-MER), RNA (152-MER)
Authors:McRae, E.K.S, Kristoffersen, E, Gallego, I, Hansen, K, Holliger, P, Andersen, E.S.
Deposit date:2023-06-06
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (5 Å)
Cite:Cryo-EM structure and functional landscape of an RNA polymerase ribozyme.
Proc.Natl.Acad.Sci.USA, 121, 2024
3NR5
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BU of 3nr5 by Molmil
Crystal structure of human Maf1
Descriptor: Repressor of RNA polymerase III transcription MAF1 homolog
Authors:Ringel, R, Vannini, A, Kusser, A.G, Berninghausen, O, Kassavetis, G.A, Cramer, P.
Deposit date:2010-06-30
Release date:2010-10-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Molecular Basis of RNA Polymerase III Transcription Repression by Maf1
Cell(Cambridge,Mass.), 143, 2010
2E5N
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BU of 2e5n by Molmil
Solution structure of the ELL_N2 domain of target of RNA polymerase II elongation factor ELL2
Descriptor: RNA polymerase II elongation factor ELL2
Authors:Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-22
Release date:2007-06-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the ELL_N2 domain of target of RNA polymerase II elongation factor ELL2
To be Published
7UME
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BU of 7ume by Molmil
DENV1 SLA top stemloop RNA (DenvTSL)
Descriptor: RNA (28-MER)
Authors:Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2022-04-06
Release date:2022-07-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the dengue virus RNA promoter.
Rna, 28, 2022
7UMC
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BU of 7umc by Molmil
DENV1 SLA RNA (DenvSLATL)
Descriptor: RNA (70-MER)
Authors:Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2022-04-06
Release date:2022-07-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the dengue virus RNA promoter.
Rna, 28, 2022
7UMD
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BU of 7umd by Molmil
DENV1 SLA three-way junction RNA (DenvSLAsh)
Descriptor: RNA (40-MER)
Authors:Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2022-04-06
Release date:2022-07-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the dengue virus RNA promoter.
Rna, 28, 2022
5FKU
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BU of 5fku by Molmil
cryo-EM structure of the E. coli replicative DNA polymerase complex in DNA free state (DNA polymerase III alpha, beta, epsilon, tau complex)
Descriptor: DNA POLYMERASE III SUBUNIT ALPHA, DNA POLYMERASE III SUBUNIT BETA, DNA POLYMERASE III SUBUNIT EPSILON, ...
Authors:Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H.
Deposit date:2015-10-20
Release date:2015-11-25
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.34 Å)
Cite:cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau.
Elife, 4, 2015
5FKV
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BU of 5fkv by Molmil
cryo-EM structure of the E. coli replicative DNA polymerase complex bound to DNA (DNA polymerase III alpha, beta, epsilon, tau complex)
Descriptor: DNA POLYMERASE III BETA, DNA POLYMERASE III EPSILON, DNA POLYMERASE III SUBUNIT ALPHA, ...
Authors:Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H.
Deposit date:2015-10-20
Release date:2015-11-25
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (8.04 Å)
Cite:cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau.
Elife, 4, 2015
2RPT
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BU of 2rpt by Molmil
Structure of the CC mismatch from the thymidylate synthase binding site 1 hairpin and analysis of its interaction with paromomycin
Descriptor: RNA (5'-R(*GP*GP*CP*CP*CP*GP*CP*CP*GP*AP*AP*AP*GP*GP*CP*CP*GP*GP*CP*C)-3')
Authors:Tavares, T.J, Johnson, P.E.
Deposit date:2008-08-23
Release date:2009-08-25
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the cytosine-cytosine mismatch in the thymidylate synthase mRNA binding site and analysis of its interaction with the aminoglycoside paromomycin
Rna, 15, 2009
3MZY
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BU of 3mzy by Molmil
The Crystal Structure of the RNA polymerase sigma-H factor from Fusobacterium nucleatum to 2.5A
Descriptor: RNA polymerase sigma-H factor
Authors:Stein, A.J, Chhor, G, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-05-13
Release date:2010-06-02
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Crystal Structure of the RNA polymerase sigma-H factor from Fusobacterium nucleatum to 2.5A
To be Published
5FKW
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BU of 5fkw by Molmil
cryo-EM structure of the E. coli replicative DNA polymerase complex bound to DNA (DNA polymerase III alpha, beta, epsilon)
Descriptor: DNA POLYMERASE III ALPHA, DNA POLYMERASE III BETA, DNA POLYMERASE III EPSILON, ...
Authors:Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H.
Deposit date:2015-10-20
Release date:2015-11-25
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (7.3 Å)
Cite:cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau.
Elife, 4, 2015
1SZA
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BU of 1sza by Molmil
The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model
Descriptor: CTD-peptide, PCF11 protein
Authors:Meinhart, A, Cramer, P.
Deposit date:2004-04-05
Release date:2004-07-13
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Recognition of RNA polymerase II carboxy-terminal domain by 3'-RNA-processing factors.
Nature, 430, 2004
6PMI
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BU of 6pmi by Molmil
Sigm28-transcription initiation complex with specific promoter at the state 1
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Liu, B, Shi, W.
Deposit date:2019-07-02
Release date:2020-05-13
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.86 Å)
Cite:Structural basis of bacterial sigma28-mediated transcription reveals roles of the RNA polymerase zinc-binding domain.
Embo J., 39, 2020
1SZ9
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BU of 1sz9 by Molmil
The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model
Descriptor: PCF11 protein
Authors:Meinhart, A, Cramer, P.
Deposit date:2004-04-05
Release date:2004-07-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Recognition of RNA polymerase II carboxy-terminal domain by 3'-RNA-processing factors.
Nature, 430, 2004

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