Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3BL2
DownloadVisualize
BU of 3bl2 by Molmil
Crystal Structure of M11, the BCL-2 Homolog of Murine Gamma-herpesvirus 68, Complexed with Mouse Beclin1 (residues 106-124)
Descriptor: Beclin-1, V-bcl-2
Authors:Oh, B.-H, Woo, J.-S, Ku, B.
Deposit date:2007-12-10
Release date:2008-02-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and Biochemical Bases for the Inhibition of Autophagy and Apoptosis by Viral BCL-2 of Murine gamma-Herpesvirus 68
Plos Pathog., 4, 2008
3BN1
DownloadVisualize
BU of 3bn1 by Molmil
Crystal structure of GDP-perosamine synthase
Descriptor: 2-OXOGLUTARIC ACID, ACETATE ION, Perosamine synthetase, ...
Authors:Cook, P.D, Holden, H.M.
Deposit date:2007-12-13
Release date:2008-03-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:GDP-Perosamine Synthase: Structural Analysis and Production of a Novel Trideoxysugar
Biochemistry, 47, 2008
3BNP
DownloadVisualize
BU of 3bnp by Molmil
Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G Mutant)
Descriptor: A site of human mitochondrial ribosome, A chain, B chain, ...
Authors:Kondo, J, Westhof, E.
Deposit date:2007-12-14
Release date:2008-06-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates
Nucleic Acids Res., 36, 2008
3BOK
DownloadVisualize
BU of 3bok by Molmil
Structure of the C. botulinum neurotoxin serotype A apo-enzyme
Descriptor: Neurotoxin A
Authors:Silvaggi, N.R, Allen, K.N.
Deposit date:2007-12-17
Release date:2008-05-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Catalytic features of the botulinum neurotoxin A light chain revealed by high resolution structure of an inhibitory peptide complex.
Biochemistry, 47, 2008
3BSW
DownloadVisualize
BU of 3bsw by Molmil
PglD-citrate complex, from Campylobacter jejuni NCTC 11168
Descriptor: Acetyltransferase, CITRIC ACID
Authors:Olivier, N.B, Imperiali, B.
Deposit date:2007-12-26
Release date:2008-07-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure and catalytic mechanism of PglD from Campylobacter jejuni.
J.Biol.Chem., 283, 2008
3BUL
DownloadVisualize
BU of 3bul by Molmil
E. coli I690C/G743C MetH C-terminal fragment (649-1227)
Descriptor: COBALAMIN, Methionine synthase
Authors:Koutmos, M, Pattridge, K.A, Ludwig, M.L.
Deposit date:2008-01-03
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A disulfide-stabilized conformer of methionine synthase reveals an unexpected role for the histidine ligand of the cobalamin cofactor.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3C5H
DownloadVisualize
BU of 3c5h by Molmil
Crystal structure of the Ras homolog domain of human GRLF1 (p190RhoGAP)
Descriptor: Glucocorticoid receptor DNA-binding factor 1, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Shen, L, Tong, Y, Tempel, W, MacKenzie, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2008-01-31
Release date:2008-02-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the Ras homolog domain of human GRLF1 (p190RhoGAP).
To be Published
3BKP
DownloadVisualize
BU of 3bkp by Molmil
Crystal structure of the Toxoplasma gondii cyclophilin, 49.m03261
Descriptor: Cyclophilin, GLYCEROL
Authors:Wernimont, A.K, Lew, J, Kozieradzki, I, Lin, Y.H, Sun, X, Khuu, C, Zhao, Y, Schapira, M, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bochkarev, A, Hui, R, Artz, J.D, Amani, M, Structural Genomics Consortium (SGC)
Deposit date:2007-12-07
Release date:2007-12-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the Toxoplasma gondii cyclophilin, 49.m03261.
To be Published
3BXJ
DownloadVisualize
BU of 3bxj by Molmil
Crystal Structure of the C2-GAP Fragment of synGAP
Descriptor: Ras GTPase-activating protein SynGAP
Authors:Pena, V, Hothorn, M, Eberth, A, Kaschau, N, Parret, A, Gremer, L, Bonneau, F, Ahmadian, M.R, Scheffzek, K.
Deposit date:2008-01-14
Release date:2008-03-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:The C2 domain of SynGAP is essential for stimulation of the Rap GTPase reaction.
Embo Rep., 9, 2008
3BRD
DownloadVisualize
BU of 3brd by Molmil
CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3'), DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3'), ...
Authors:Wilson, J.J, Kovall, R.A.
Deposit date:2007-12-21
Release date:2008-04-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:RAM-induced Allostery Facilitates Assembly of a Notch Pathway Active Transcription Complex.
J.Biol.Chem., 283, 2008
3BNT
DownloadVisualize
BU of 3bnt by Molmil
Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]Cl3 (A1555G mutant, Br-derivative)
Descriptor: A site of human mitochondrial ribosome, COBALT HEXAMMINE(III), SODIUM ION
Authors:Kondo, J, Westhof, E.
Deposit date:2007-12-14
Release date:2008-06-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates
Nucleic Acids Res., 36, 2008
3BRW
DownloadVisualize
BU of 3brw by Molmil
Structure of the Rap-RapGAP complex
Descriptor: BERYLLIUM TRIFLUORIDE ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Scrima, A, Thomas, C, Deaconescu, D, Wittinghofer, A.
Deposit date:2007-12-21
Release date:2008-03-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The Rap-RapGAP complex: GTP hydrolysis without catalytic glutamine and arginine residues
Embo J., 27, 2008
3BOL
DownloadVisualize
BU of 3bol by Molmil
Cobalamin-dependent methionine synthase (1-566) from Thermotoga maritima complexed with Zn2+
Descriptor: 2-AMINO-4-MERCAPTO-BUTYRIC ACID, 5-methyltetrahydrofolate S-homocysteine methyltransferase, POTASSIUM ION, ...
Authors:Koutmos, M, Smith, J.L, Ludwig, M.L.
Deposit date:2007-12-17
Release date:2008-03-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Metal active site elasticity linked to activation of homocysteine in methionine synthases.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3BUN
DownloadVisualize
BU of 3bun by Molmil
Crystal structure of c-Cbl-TKB domain complexed with its binding motif in Sprouty4
Descriptor: 13-meric peptide from Protein sprouty homolog 4, E3 ubiquitin-protein ligase CBL
Authors:Ng, C, Jackson, R.A, Buschdorf, J.P, Sun, Q, Guy, G.R, Sivaraman, J.
Deposit date:2008-01-03
Release date:2008-02-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for a novel intrapeptidyl H-bond and reverse binding of c-Cbl-TKB domain substrates
Embo J., 27, 2008
3BW9
DownloadVisualize
BU of 3bw9 by Molmil
Crystal Structure of HLA B*3508 in complex with a HCMV 12-mer peptide from the pp65 protein
Descriptor: Beta-2-microglobulin, CPS peptide from 65 kDa lower matrix phosphoprotein, HLA class I histocompatibility antigen, ...
Authors:Wynn, K.K, Marland, Z, Cooper, L, Silins, S.L, Gras, S, Archbold, J.K, Tynan, F.E, Miles, J.J, McCluskey, J, Burrows, S.R, Rossjohn, J, Khanna, R.
Deposit date:2008-01-08
Release date:2008-04-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Impact of clonal competition for peptide-MHC complexes on the CD8+ T-cell repertoire selection in a persistent viral infection
Blood, 111, 2008
3BUI
DownloadVisualize
BU of 3bui by Molmil
Golgi mannosidase II D204A catalytic nucleophile mutant complex with Tris
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-mannosidase 2, ...
Authors:Kuntz, D.A, Rose, D.R.
Deposit date:2008-01-02
Release date:2008-07-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Probing the substrate specificity of Golgi alpha-mannosidase II by use of synthetic oligosaccharides and a catalytic nucleophile mutant.
J.Am.Chem.Soc., 130, 2008
3BVT
DownloadVisualize
BU of 3bvt by Molmil
GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with Methyl (alpha-D-mannopyranosyl)-(1->3)-S-alpha-D-mannopyranoside
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kuntz, D.A, Rose, D.R.
Deposit date:2008-01-07
Release date:2008-07-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Probing the substrate specificity of Golgi alpha-mannosidase II by use of synthetic oligosaccharides and a catalytic nucleophile mutant.
J.Am.Chem.Soc., 130, 2008
3C2G
DownloadVisualize
BU of 3c2g by Molmil
Crystal complex of SYS-1/POP-1 at 2.5A resolution
Descriptor: Pop-1 8-residue peptide, Sys-1 protein
Authors:Liu, J, Phillips, B.T, Amaya, M.F, Kimble, J, Xu, W.
Deposit date:2008-01-24
Release date:2008-05-20
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The C. elegans SYS-1 protein is a bona fide beta-catenin.
Dev.Cell, 14, 2008
3BXZ
DownloadVisualize
BU of 3bxz by Molmil
Crystal structure of the isolated DEAD motor domains from Escherichia coli SecA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Preprotein translocase subunit secA, ...
Authors:Nithianantham, S, Namjoshi, S, Shilton, B.H.
Deposit date:2008-01-15
Release date:2008-09-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Analysis of the isolated SecA DEAD motor suggests a mechanism for chemical-mechanical coupling.
J.Mol.Biol., 383, 2008
3BKL
DownloadVisualize
BU of 3bkl by Molmil
Testis ACE co-crystal structure with ketone ACE inhibitor kAW
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Watermeyer, J.M, Kroger, W.L, O'Neill, H.G, Sewell, B.T, Sturrock, E.D.
Deposit date:2007-12-07
Release date:2008-06-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Probing the basis of domain-dependent inhibition using novel ketone inhibitors of Angiotensin-converting enzyme
Biochemistry, 47, 2008
3BZL
DownloadVisualize
BU of 3bzl by Molmil
Crystal structural of native EscU C-terminal domain
Descriptor: EscU, FORMIC ACID, SODIUM ION
Authors:Zarivach, R, Deng, W, Vuckovic, M, Felise, H.B, Nguyen, H.V, Miller, S.I, Finlay, B.B, Strynadka, N.C.J.
Deposit date:2008-01-18
Release date:2008-04-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS.
Nature, 453, 2008
3BLQ
DownloadVisualize
BU of 3blq by Molmil
Crystal Structure of Human CDK9/cyclinT1 in Complex with ATP
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-TRIPHOSPHATE, Cell division protein kinase 9, ...
Authors:Baumli, S, Lolli, G, Lowe, E.D, Johnson, L.N.
Deposit date:2007-12-11
Release date:2008-07-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The structure of P-TEFb (CDK9/cyclin T1), its complex with flavopiridol and regulation by phosphorylation
Embo J., 27, 2008
3BN9
DownloadVisualize
BU of 3bn9 by Molmil
Crystal Structure of MT-SP1 in complex with Fab Inhibitor E2
Descriptor: 1,2-ETHANEDIOL, E2 Fab Heavy Chain, E2 Fab Light Chain, ...
Authors:Farady, C.J, Schneider, E.L, Egea, P.F, Goetz, D.H, Craik, C.S.
Deposit date:2007-12-13
Release date:2008-09-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.173 Å)
Cite:Structure of an Fab-protease complex reveals a highly specific non-canonical mechanism of inhibition
J.Mol.Biol., 380, 2008
3DQD
DownloadVisualize
BU of 3dqd by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 2: Structure 12 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DVK
DownloadVisualize
BU of 3dvk by Molmil
Crystal Structure of Ca2+/CaM-CaV2.3 IQ domain complex
Descriptor: CALCIUM ION, Calmodulin, Voltage-dependent R-type calcium channel subunit alpha-1E
Authors:Kim, E.Y, Rumpf, C.H, Fujiwara, Y, Cooley, E.S, Van Petegem, F, Minor, D.L.
Deposit date:2008-07-18
Release date:2008-11-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of Ca(V)2 Ca(2+)/CaM-IQ Domain Complexes Reveal Binding Modes that Underlie Calcium-Dependent Inactivation and Facilitation.
Structure, 16, 2008

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon