PDB: 5653 resultsInfo pagesStatus searchChemie searchBIRD

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2V9L	L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- E192A) Descriptor: ACETATE ION, PHOSPHATE ION, RHAMNULOSE-1-PHOSPHATE ALDOLASE, ... Authors: Grueninger, D, Schulz, G.E. Deposit date: 2007-08-24 Release date: 2008-01-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.23 Å) Cite: Designed Protein-Protein Association. Science, 319, 2008
2V9M	L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT A87M- T109F-E192A) Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CITRIC ACID, ... Authors: Grueninger, D, Schulz, G.E. Deposit date: 2007-08-24 Release date: 2008-01-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Designed Protein-Protein Association. Science, 319, 2008
2UYU	L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT A88F- E192A) Descriptor: FE (III) ION, RHAMNULOSE-1-PHOSPHATE ALDOLASE, ZINC ION Authors: Grueninger, D, Schulz, G.E. Deposit date: 2007-04-20 Release date: 2008-01-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Designed Protein-Protein Association. Science, 319, 2008
2V9O	L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT A87M- T109F-E192A) Descriptor: RHAMNULOSE-1-PHOSPHATE ALDOLASE, ZINC ION Authors: Grueninger, D, Schulz, G.E. Deposit date: 2007-08-24 Release date: 2008-01-22 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Designed Protein-Protein Association. Science, 319, 2008
1FD6	DELTA0: A COMPUTATIONALLY DESIGNED CORE VARIANT OF THE B1 DOMAIN OF STREPTOCOCCAL PROTEIN G Descriptor: IMMUNOGLOBULIN G BINDING PROTEIN G Authors: Ross, S.A, Sarisky, C.A, Su, A, Mayo, S.L. Deposit date: 2000-07-19 Release date: 2001-09-19 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Designed protein G core variants fold to native-like structures: sequence selection by ORBIT tolerates variation in backbone specification. Protein Sci., 10, 2001
1FCL	DELTA1.5: A COMPUTATIONALLY DESIGNED CORE VARIANT OF THE B1 DOMAIN OF STREPTOCOCCAL PROTEIN G Descriptor: IMMUNOGLOBULIN G BINDING PROTEIN G Authors: Ross, S.A, Sarisky, C.A, Su, A, Mayo, S.L. Deposit date: 2000-07-18 Release date: 2001-09-19 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Designed protein G core variants fold to native-like structures: sequence selection by ORBIT tolerates variation in backbone specification. Protein Sci., 10, 2001
2V9U	Rim domain of main porin from Mycobacteria smegmatis Descriptor: MSPA Authors: Grueninger, D, Ziegler, M.O.P, Koetter, J.W.A, Treiber, N, Schulze, M.-S, Schulz, G.E. Deposit date: 2007-08-27 Release date: 2008-01-15 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.59 Å) Cite: Designed Protein-Protein Association. Science, 319, 2008
2V7G	Crystal Structure of an Engineered Urocanase Tetramer Descriptor: ACETATE ION, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... Authors: Treiber, N, Schulz, G.E. Deposit date: 2007-07-30 Release date: 2008-01-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Designed Protein-Protein Association. Science, 319, 2008
1CQN	PROTEIN AGGREGATION AND ALZHEIMER'S DISEASE: CRYSTALLOGRAPHIC ANALYSIS OF THE PHENOMENON. ENGINEERED VERSION OF THE RIBOSOMAL PROTEIN S6 USED AS A STABLE SCAFFOLD TO STUDY OLIGOMERIZATION. Descriptor: RIBOSOMAL PROTEIN S6 Authors: Kristensen, O, Otzen, D.E, Oliveberg, M. Deposit date: 1999-08-08 Release date: 2000-09-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Designed protein tetramer zipped together with a hydrophobic Alzheimer homology: a structural clue to amyloid assembly. Proc.Natl.Acad.Sci.USA, 97, 2000
1CQM	PROTEIN AGGREGATION AND ALZHEIMER'S DISEASE: CRYSTALLOGRAPHIC ANALYSIS OF THE PHENOMENON. ENGINEERED VERSION OF THE RIBOSOMAL PROTEIN S6 USED AS A STABLE SCAFFOLD TO STUDY OLIGOMERIZATION. Descriptor: RIBOSOMAL PROTEIN S6 Authors: Kristensen, O, Otzen, D.E, Oliveberg, M. Deposit date: 1999-08-08 Release date: 2000-09-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Designed protein tetramer zipped together with a hydrophobic Alzheimer homology: a structural clue to amyloid assembly. Proc.Natl.Acad.Sci.USA, 97, 2000
1QJH	Protein Aggregation and Alzheimer's Disease: Crystallographic Analysis of the Phenomenon. Engineered version of the ribosomal protein S6 used as a stable scaffold to study oligomerization. Descriptor: 30S ribosomal protein S6, MAGNESIUM ION Authors: Kristensen, O, Otzen, D.E, Oliveberg, M. Deposit date: 1999-06-24 Release date: 2000-06-29 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Designed protein tetramer zipped together with a hydrophobic Alzheimer homology: a structural clue to amyloid assembly. Proc. Natl. Acad. Sci. U.S.A., 97, 2000
6FJS	Proteinase~K SIRAS phased structure of room-temperature, serially collected synchrotron data Descriptor: CALCIUM ION, Proteinase K Authors: Botha, S, Baitan, D, Jungnickel, K.E.J, Oberthuer, D, Schmidt, C, Stern, S, Wiedorn, M.O, Perbandt, M, Chapman, H.N, Betzel, C. Deposit date: 2018-01-23 Release date: 2018-10-10 Method: X-RAY DIFFRACTION (1.9 Å) Cite: De novoprotein structure determination by heavy-atom soaking in lipidic cubic phase and SIRAS phasing using serial synchrotron crystallography. IUCrJ, 5, 2018
6XY1	Crystal structure of a de novo designed parallel four-helix coiled coil, 4-KE-4. Descriptor: 4-KE-4 Authors: Edgell, C.L, Savery, N.J, Woolfson, D.N. Deposit date: 2020-01-29 Release date: 2020-03-18 Last modified: 2023-03-08 Method: X-RAY DIFFRACTION (1.5 Å) Cite: RobustDe Novo-Designed Homotetrameric Coiled Coils. Biochemistry, 59, 2020
6XY0	Crystal structure of a de novo designed parallel four-helix coiled coil, 3-EK-4 Descriptor: 3-EK-4 Authors: Edgell, C.L, Savery, N.J, Woolfson, D.N. Deposit date: 2020-01-29 Release date: 2020-03-18 Last modified: 2020-03-25 Method: X-RAY DIFFRACTION (1.11 Å) Cite: RobustDe Novo-Designed Homotetrameric Coiled Coils. Biochemistry, 59, 2020
6XXZ	Crystal structure of a de novo designed parallel four-helix coiled coil, 2-EK-4 Descriptor: 2-EK-4, PROPANOIC ACID Authors: Edgell, C.L, Savery, N.J, Woolfson, D.N. Deposit date: 2020-01-29 Release date: 2020-03-18 Last modified: 2020-03-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: RobustDe Novo-Designed Homotetrameric Coiled Coils. Biochemistry, 59, 2020
3V86	Computational Design of a Protein Crystal Descriptor: De novo design helix Authors: Acharya, R, North, B, Saven, J, DeGrado, W. Deposit date: 2011-12-22 Release date: 2012-05-09 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.91 Å) Cite: Computational design of a protein crystal. Proc.Natl.Acad.Sci.USA, 109, 2012
1EC5	CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL Descriptor: PROTEIN (FOUR-HELIX BUNDLE MODEL), ZINC ION Authors: Geremia, S. Deposit date: 2000-01-25 Release date: 2000-07-26 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Inaugural article: retrostructural analysis of metalloproteins: application to the design of a minimal model for diiron proteins. Proc.Natl.Acad.Sci.USA, 97, 2000
5VTE	Hetero antiparallel coiled coil hexamer formed by de novo peptides Descriptor: de novo peptide 1, de novo peptide 2 Authors: Spencer, R.K, Hochbaum, A.I. Deposit date: 2017-05-16 Release date: 2017-10-04 Last modified: 2022-12-14 Method: X-RAY DIFFRACTION (2.023 Å) Cite: The Phe-Ile Zipper: A Specific Interaction Motif Drives Antiparallel Coiled-Coil Hexamer Formation. Biochemistry, 56, 2017
8WAT	De novo transcribing complex 10 (TC10), the early elongation complex with Pol II positioned 10nt downstream of TSS Descriptor: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (2.82 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WB0	De novo transcribing complex 17 (TC17), the early elongation complex with Pol II positioned 17nt downstream of TSS Descriptor: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAU	De novo transcribing complex 11 (TC11), the early elongation complex with Pol II positioned 11nt downstream of TSS Descriptor: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (2.78 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAV	De novo transcribing complex 12 (TC12), the early elongation complex with Pol II positioned 12nt downstream of TSS Descriptor: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (2.72 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAZ	De novo transcribing complex 16 (TC16), the early elongation complex with Pol II positioned 16nt downstream of TSS Descriptor: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAX	De novo transcribing complex 14 (TC14), the early elongation complex with Pol II positioned 14nt downstream of TSS Descriptor: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAY	De novo transcribing complex 15 (TC15), the early elongation complex with Pol II positioned 15nt downstream of TSS Descriptor: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023

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