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7QO1
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complex of DNA ligase I and FEN1 on PCNA and DNA
Descriptor: ADENOSINE MONOPHOSPHATE, DNA ligase 1, Flap endonuclease 1, ...
Authors:Blair, K, Tehseen, M, Raducanu, V.S, Shahid, T, Lancey, C, Cruehet, R, Hamdan, S, De Biasio, A.
Deposit date:2021-12-23
Release date:2023-01-11
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Mechanism of human Lig1 regulation by PCNA in Okazaki fragment sealing.
Nat Commun, 13, 2022
7RPX
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BU of 7rpx by Molmil
Archaeal DNA ligase and heterotrimeric PCNA in complex with end-joined DNA
Descriptor: DNA ligase, DNA polymerase sliding clamp 1, DNA polymerase sliding clamp 2, ...
Authors:Sverzhinsky, A, Pascal, J.M.
Deposit date:2021-08-04
Release date:2021-11-17
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase.
Structure, 30, 2022
7RPW
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Archaeal DNA ligase and heterotrimeric PCNA in complex with adenylated DNA
Descriptor: ADENOSINE MONOPHOSPHATE, DNA ligase, DNA polymerase sliding clamp 1, ...
Authors:Sverzhinsky, A, Pascal, J.M.
Deposit date:2021-08-04
Release date:2021-11-17
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.38 Å)
Cite:Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase.
Structure, 30, 2022
7RPO
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Archaeal DNA ligase and heterotrimeric PCNA in complex with non-ligatable DNA
Descriptor: ADENOSINE MONOPHOSPHATE, DNA ligase, DNA polymerase sliding clamp 1, ...
Authors:Sverzhinsky, A, Pascal, J.M.
Deposit date:2021-08-03
Release date:2021-11-17
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (4.16 Å)
Cite:Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase.
Structure, 30, 2022
7N5L
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PCNA from Thermococcus gammatolerans: crystal II, collection 20, 3.07 A, 77.0 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5K
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PCNA from Thermococcus gammatolerans: crystal II, collection 1, 1.98 A, 3.84 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5M
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PCNA from Thermococcus gammatolerans: crystal III, collection 1, 2.00 A, 1.91 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5I
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PCNA from Thermococcus gammatolerans: crystal I, collection 1, 1.95 A, 5.22 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5N
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PCNA from Thermococcus gammatolerans: crystal III, collection 15, 2.20 A, 28.7 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7N5J
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PCNA from Thermococcus gammatolerans: crystal I, collection 5, 2.82 A, 89.1 MGy
Descriptor: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION
Authors:Marin-Tovar, Y, Rudino-Pinera, E.
Deposit date:2021-06-05
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation.
Proteins, 90, 2022
7EP8
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BU of 7ep8 by Molmil
Crystal structure of PCNA from Neurospora crassa
Descriptor: Proliferating cell nuclear antigen
Authors:Sundaram, R, Vasudevan, D.
Deposit date:2021-04-26
Release date:2021-06-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Interdomain connecting loop and J loop structures determine cross-species compatibility of PCNA.
J.Biol.Chem., 297, 2021
7O1E
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BU of 7o1e by Molmil
Crystal structure of PCNA from Chaetomium thermophilum
Descriptor: Proliferating cell nuclear antigen
Authors:Alphey, M.A, MacNeill, S, Yang, D.
Deposit date:2021-03-29
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 10 helix.
Febs J., 290, 2023
7O1F
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PCNA from Chaetomium thermophilum in complex with PolD4 PIP peptide
Descriptor: Peptide fragment from PolD4, Proliferating cell nuclear antigen, SODIUM ION
Authors:Alphey, M.A, MacNeill, S, Yang, D.
Deposit date:2021-03-29
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 10 helix.
Febs J., 290, 2023
7M5M
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BU of 7m5m by Molmil
PCNA bound to peptide mimetic
Descriptor: N-BUTANE, Peptide mimetic (ACE)RQCSMTCFYHSK(NH2) with linker, Proliferating cell nuclear antigen
Authors:Vandborg, B.A, Bruning, J.B.
Deposit date:2021-03-24
Release date:2021-08-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:A cell permeable bimane-constrained PCNA-interacting peptide.
Rsc Chem Biol, 2, 2021
7M5L
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BU of 7m5l by Molmil
PCNA bound to peptide mimetic with linker
Descriptor: PROPANE, Peptide mimetic (ACE)RQCSMTCFYHSK(NH2) with linker, Proliferating cell nuclear antigen
Authors:Vandborg, B.A, Bruning, J.B.
Deposit date:2021-03-24
Release date:2021-08-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:A cell permeable bimane-constrained PCNA-interacting peptide.
Rsc Chem Biol, 2, 2021
7M5N
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BU of 7m5n by Molmil
PCNA bound to peptide mimetic with linker
Descriptor: 1,3-dimethylbenzene, Peptide mimetic (ACE)RQCSMTCFYHSK(NH2) with linker, Proliferating cell nuclear antigen
Authors:Vandborg, B.A, Bruning, J.B.
Deposit date:2021-03-24
Release date:2021-08-11
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:A cell permeable bimane-constrained PCNA-interacting peptide.
Rsc Chem Biol, 2, 2021
7EFA
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BU of 7efa by Molmil
Crystal structure of the complex between the C-terminal domain of mouse MUTYH and human PCNA
Descriptor: Adenine DNA glycosylase, Proliferating cell nuclear antigen
Authors:Nakamura, T, Nakabeppu, Y, Yamagata, Y.
Deposit date:2021-03-21
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer.
Nucleic Acids Res., 49, 2021
7NV1
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BU of 7nv1 by Molmil
Human Pol Kappa holoenzyme with Ub-PCNA
Descriptor: DNA Primer, DNA Template, DNA polymerase kappa, ...
Authors:Lancey, C, De Biasio, A, Hamdan, S.M.
Deposit date:2021-03-15
Release date:2021-11-03
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Cryo-EM structure of human Pol kappa bound to DNA and mono-ubiquitylated PCNA.
Nat Commun, 12, 2021
7NV0
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BU of 7nv0 by Molmil
Human Pol Kappa holoenzyme with wt PCNA
Descriptor: DNA Primer, DNA Template, DNA polymerase kappa, ...
Authors:Lancey, C, De Biasio, A, Hamdan, S.M.
Deposit date:2021-03-15
Release date:2021-11-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure of human Pol kappa bound to DNA and mono-ubiquitylated PCNA.
Nat Commun, 12, 2021
7KQ1
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BU of 7kq1 by Molmil
PCNA bound to truncated peptide mimetic
Descriptor: LYS-ARG-ARG-GLN-THR-SER-MET-THR-ASP-PHE-TYR-HIS-SER-LYS-ARG, Proliferating cell nuclear antigen
Authors:Vandborg, B.A, Bruning, J.B.
Deposit date:2020-11-13
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Unlocking the PIP-box: A peptide library reveals interactions that drive high-affinity binding to human PCNA.
J.Biol.Chem., 296, 2021
7KQ0
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BU of 7kq0 by Molmil
PCNA bound to peptide mimetic
Descriptor: LYS-ARG-ARG-GLN-THR-SER-MET-THR-ASP-TYR-TYR-HIS-SER-LYS-ARG, Proliferating cell nuclear antigen
Authors:Vandborg, B.A, Bruning, J.B.
Deposit date:2020-11-13
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Unlocking the PIP-box: A peptide library reveals interactions that drive high-affinity binding to human PCNA.
J.Biol.Chem., 296, 2021
7KC0
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BU of 7kc0 by Molmil
Structure of the Saccharomyces cerevisiae replicative polymerase delta in complex with a primer/template and the PCNA clamp
Descriptor: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, DNA (25-MER), DNA (5'-D(P*AP*TP*GP*AP*CP*CP*AP*TP*GP*AP*TP*TP*AP*CP*GP*AP*AP*TP*TP*GP*C)-3'), ...
Authors:Zheng, F, Georgescu, R, Li, H, O'Donnell, M.E.
Deposit date:2020-10-04
Release date:2020-12-02
Last modified:2020-12-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of eukaryotic DNA polymerase delta bound to the PCNA clamp while encircling DNA.
Proc.Natl.Acad.Sci.USA, 117, 2020
7BUP
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BU of 7bup by Molmil
Crystal structure of PCNA from pathogenic yeast Candida albicans
Descriptor: Proliferating cell nuclear antigen
Authors:sundaram, R, Vasudevan, D.
Deposit date:2020-04-07
Release date:2021-02-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural analyses of PCNA from the fungal pathogen Candida albicans identify three regions with species-specific conformations.
Febs Lett., 595, 2021
6WAC
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BU of 6wac by Molmil
FF248-249AA PCNA mutant defective in BIR
Descriptor: Proliferating cell nuclear antigen
Authors:Ripley, B.M, Washington, M.T.
Deposit date:2020-03-25
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural analysis of PCNA mutant proteins defective in BIR, FF248-249AA and R80A
To be Published
6W9W
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BU of 6w9w by Molmil
R80A PCNA mutant defective in BIR
Descriptor: Proliferating cell nuclear antigen
Authors:Ripley, B.M, Washington, M.T.
Deposit date:2020-03-23
Release date:2020-09-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural analysis of PCNA mutant proteins defective in BIR, FF248-249AA and R80A
To be Published

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PDB entries from 2024-06-12

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