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8RPJ
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BU of 8rpj by Molmil
JanthE from Janthinobacterium sp. HH01
Descriptor: ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Lanza, L, Leogrande, C, Rabe von Pappenheim, F, Tittmann, K, Mueller, M.
Deposit date:2024-01-16
Release date:2024-06-12
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:JhE from Janthinobacterium sp. HH01
To Be Published
3UR2
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BU of 3ur2 by Molmil
Crystal Structure of PTE mutant H254G/H257W/L303T/K185R/I274N/A80V
Descriptor: 1,2-ETHANEDIOL, COBALT (II) ION, IMIDAZOLE, ...
Authors:Tsai, P, Fox, N.G, Li, Y, Barondeau, D.P, Raushel, F.M.
Deposit date:2011-11-21
Release date:2012-08-01
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents.
Biochemistry, 51, 2012
8R7Y
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BU of 8r7y by Molmil
Deoxyribonucleoside regulator DeoR in complex with the DNA operator
Descriptor: Deoxyribonucleoside regulator, OL18 DNA operator, strand 1, ...
Authors:Pachl, P, Soltysova, M, Rezacova, P.
Deposit date:2023-11-27
Release date:2024-06-19
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structural characterization of two prototypical repressors of SorC family reveals tetrameric assemblies on DNA and mechanism of function.
Nucleic Acids Res., 2024
2GH4
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BU of 2gh4 by Molmil
YteR/D143N/dGalA-Rha
Descriptor: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-alpha-L-rhamnopyranose, Putative glycosyl hydrolase yteR
Authors:Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K.
Deposit date:2006-03-25
Release date:2006-08-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate
Biochem.Biophys.Res.Commun., 347, 2006
2Y35
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BU of 2y35 by Molmil
Crystal structure of Xrn1-substrate complex
Descriptor: DT11 (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP)-3', LD22664P, MAGNESIUM ION
Authors:Jinek, M, Coyle, S.M, Doudna, J.A.
Deposit date:2010-12-18
Release date:2011-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Coupled 5' Nucleotide Recognition and Processivity in Xrn1-Mediated Mrna Decay.
Mol.Cell, 41, 2011
2Y3K
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BU of 2y3k by Molmil
Structure of segment MVGGVVIA from the amyloid-beta peptide (Ab, residues 35-42), alternate polymorph 1
Descriptor: AMYLOID BETA A4 PROTEIN
Authors:Colletier, J.P, Laganowsky, A, Sawaya, M.R, Eisenberg, D.
Deposit date:2010-12-21
Release date:2011-11-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular Basis for Amyloid-{Beta} Polymorphism.
Proc.Natl.Acad.Sci.USA, 108, 2011
2XGY
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BU of 2xgy by Molmil
Complex of Rabbit Endogenous Lentivirus (RELIK)Capsid with Cyclophilin A
Descriptor: GLYCEROL, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A, RELIK CAPSID N-TERMINAL DOMAIN
Authors:Goldstone, D.C, Robertson, L.E, Haire, L.F, Stoye, J.P, Taylor, I.A.
Deposit date:2010-06-08
Release date:2010-09-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Functional Analysis of Prehistoric Lentiviruses Uncovers an Ancient Molecular Interface.
Cell Host Microbe, 8, 2010
8RUK
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BU of 8ruk by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+, and ARN25850
Descriptor: 2-[2,6-bis(bromanyl)-3,4,5-tris(oxidanyl)phenyl]carbonyl-~{N}-(2-pyrrolidin-1-ylethyl)-1-benzofuran-5-carboxamide, Domains 1-5, MAGNESIUM ION, ...
Authors:Silvestri, I, Marcia, M.
Deposit date:2024-01-31
Release date:2024-06-19
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (4.81 Å)
Cite:Targeting the conserved active site of splicing machines with specific and selective small molecule modulators.
Nat Commun, 15, 2024
2Y3J
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BU of 2y3j by Molmil
Structure of segment AIIGLM from the amyloid-beta peptide (Ab, residues 30-35)
Descriptor: AMYLOID BETA A4 PROTEIN
Authors:Colletier, J.P, Laganowsky, A, Sawaya, M.R, Eisenberg, D.
Deposit date:2010-12-21
Release date:2011-11-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Molecular Basis for Amyloid-{Beta} Polymorphism.
Proc.Natl.Acad.Sci.USA, 108, 2011
8S6E
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BU of 8s6e by Molmil
Monoclonal antibody MenW targeting serogroup W of Neisseria meningitidis
Descriptor: MenW.01 Heavy chain, MenW.01 Light chain, SODIUM ION
Authors:Pietri, G.P, Bertuzzi, S, Karnicar, K, Unione, L, Lisnic, B, Malic, S, Miklic, K, Novak, M, Calloni, I, Santini, L, Usenik, A, Rosaria Romano, M, Adamo, R, Jonjic, S, Turk, D, Jimenez-Barbero, J, Lenac Rovis, T.
Deposit date:2024-02-27
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Antigenic determinants driving serogroup-specific antibody response to Neisseria meningitidis C, W, and Y capsular polysaccharides: Insights for rational vaccine design.
Carbohydr Polym, 341, 2024
8RLN
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BU of 8rln by Molmil
Crystal structure of human adenosine A2A receptor (construct A2A-PSB2-bRIL) complexed with the partial antagonist LUF5834 at the orthosteric pocket
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-azanyl-4-(4-hydroxyphenyl)-6-(1~{H}-imidazol-2-ylmethylsulfanyl)pyridine-3,5-dicarbonitrile, ...
Authors:Strater, N, Claff, T, Weisse, R.H, Muller, C.E.
Deposit date:2024-01-03
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structural Insights into Partial Activation of the Prototypic G Protein-Coupled Adenosine A 2A Receptor.
Acs Pharmacol Transl Sci, 7, 2024
2XO1
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BU of 2xo1 by Molmil
xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine
Descriptor: ACETATE ION, COBALT HEXAMMINE(III), Guanine riboswitch, ...
Authors:Daldrop, P, Reyes, F.E, Robinson, D.A, Hammond, C.M, Lilley, D.M.J, Batey, R.T, Brenk, R.
Deposit date:2010-08-09
Release date:2011-04-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Novel ligands for a purine riboswitch discovered by RNA-ligand docking.
Chem. Biol., 18, 2011
8S4A
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BU of 8s4a by Molmil
CdaA-B04 complex
Descriptor: 2-[cyanomethyl(methyl)amino]-N-(6-methylpyridin-2-yl)ethanamide, CHLORIDE ION, Diadenylate cyclase
Authors:Neumann, P, Ficner, R.
Deposit date:2024-02-21
Release date:2024-06-19
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:CdaA-B04 complex
To Be Published
8RPI
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BU of 8rpi by Molmil
JanthE from Janthinobacterium sp. HH01, lactyl-ThDP
Descriptor: 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-CARBOXY-1-HYDROXYETHYL)-5-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ...
Authors:Lanza, L, Leogrande, C, Rabe von Pappenheim, F, Tittmann, K, Mueller, M.
Deposit date:2024-01-16
Release date:2024-06-12
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:JhE from Janthinobacterium sp. HH01
To Be Published
8RKU
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BU of 8rku by Molmil
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsC domain local-refinement map
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Non-target strand - LE, ...
Authors:Tenjo-Castano, F, Mesa, P, Montoya, G.
Deposit date:2023-12-30
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.
Mol.Cell, 84, 2024
2XN0
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BU of 2xn0 by Molmil
Structure of alpha-galactosidase from Lactobacillus acidophilus NCFM, PtCl4 derivative
Descriptor: ALPHA-GALACTOSIDASE, GLYCEROL, PLATINUM (II) ION
Authors:Fredslund, F, Abou Hachem, M, Larsen, R.J, Sorensen, P.G, Lo Leggio, L, Svensson, B.
Deposit date:2010-07-30
Release date:2011-08-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Alpha-Galactosidase from Lactobacillus Acidophilus Ncfm: Insight Into Tetramer Formation and Substrate Binding.
J.Mol.Biol., 412, 2011
2Y2A
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BU of 2y2a by Molmil
Structure of segment KLVFFA from the amyloid-beta peptide (Ab, residues 16-21), alternate polymorph I
Descriptor: ACETATE ION, AMYLOID BETA A4 PROTEIN
Authors:Colletier, J, Laganowsky, A, Sawaya, M.R, Eisenberg, D.
Deposit date:2010-12-14
Release date:2011-10-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Molecular Basis for Amyloid-{Beta} Polymorphism.
Proc.Natl.Acad.Sci.USA, 108, 2011
2XEN
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BU of 2xen by Molmil
Structural Determinants for Improved Thermal Stability of Designed Ankyrin Repeat Proteins With a Redesigned C-capping Module.
Descriptor: 1,2-ETHANEDIOL, METHANOL, NI1C MUT4, ...
Authors:Kramer, M, Wetzel, S.K, Pluckthun, A, Mittl, P, Grutter, M.
Deposit date:2010-05-17
Release date:2010-08-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Determinants for Improved Thermal Stability of Designed Ankyrin Repeat Proteins with a Redesigned C-Capping Module.
J.Mol.Biol., 404, 2010
8S1U
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BU of 8s1u by Molmil
YlmH bound to stalled 50S subunits with RqcH and PtRNA
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Paternoga, H, Wilson, D.N.
Deposit date:2024-02-16
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis.
Nucleic Acids Res., 2024
2Y5C
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BU of 2y5c by Molmil
Structure of human ferredoxin 2 (Fdx2)in complex with 2Fe2S cluster
Descriptor: ADRENODOXIN-LIKE PROTEIN, MITOCHONDRIAL, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Webert, H, Hobler, A, Sheftel, A.D, Molik, S, Maestre-Reyna, M, Essen, L.-O, Vorniscescu, D, Keusgen, M, Hannemann, F, Bernhardt, R, Lill, R.
Deposit date:2011-01-12
Release date:2012-02-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and Functional Studies on Human Mitochondrial Ferredoxins
To be Published
8S49
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BU of 8s49 by Molmil
CdaA-B06 complex
Descriptor: 2-(4-fluorophenyl)acetohydrazide, Diadenylate cyclase, SODIUM ION
Authors:Neumann, P, Ficner, R.
Deposit date:2024-02-21
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:CdaA-B06 complex
To Be Published
2XHG
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BU of 2xhg by Molmil
Crystal Structure of the Epimerization Domain from the Initiation Module of Tyrocidine Biosynthesis
Descriptor: GLYCEROL, SODIUM ION, TYROCIDINE SYNTHETASE A
Authors:Samel, S.-A, Heine, A, Marahiel, M.A, Essen, L.-O.
Deposit date:2010-06-15
Release date:2011-07-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the Epimerization Domain of Tyrocidine Synthetase A
Acta Crystallogr.,Sect.D, 70, 2014
8RKT
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BU of 8rkt by Molmil
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K Cas12k domain local-refinement map
Descriptor: MAGNESIUM ION, Non-target strand - LE, ShCas12k, ...
Authors:Tenjo-Castano, F, Mesa, P, Montoya, G.
Deposit date:2023-12-30
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.35 Å)
Cite:Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.
Mol.Cell, 84, 2024
8RKV
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BU of 8rkv by Molmil
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsB domain local-refinement map
Descriptor: LE, MAGNESIUM ION, Non-target strand - LE, ...
Authors:Tenjo-Castano, F, Mesa, P, Montoya, G.
Deposit date:2023-12-30
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.11 Å)
Cite:Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.
Mol.Cell, 84, 2024
8RPB
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BU of 8rpb by Molmil
Structure of S79 Fab in complex with IgV domain of human PD-L1
Descriptor: CHLORIDE ION, GLYCEROL, Programmed cell death 1 ligand 1, ...
Authors:Svensson, A, Kelpsas, V, Laursen, M, Rose, N.
Deposit date:2024-01-15
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.794 Å)
Cite:Structural analysis of light chain-driven bispecific antibodies targeting CD47 and PD-L1.
Mabs, 16, 2024

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PDB entries from 2024-07-10

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