3B0Y
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![BU of 3b0y by Molmil](/molmil-images/mine/3b0y) | K263D mutant of PolX from Thermus thermophilus HB8 complexed with Ca-dGTP | Descriptor: | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ... | Authors: | Nakane, S, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2011-06-17 | Release date: | 2012-05-02 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg(2+)-dNTP before binding to DNA. J.Mol.Biol., 417, 2012
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2GKI
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![BU of 2gki by Molmil](/molmil-images/mine/2gki) | Heavy and light chain variable single domains of an anti-DNA binding antibody hydrolyze both double- and single-stranded DNAs without sequence specificity | Descriptor: | nuclease | Authors: | Kim, Y.R, Kim, J.S, Lee, S.H, Lee, W.R, Sohn, J.N, Chung, Y.C, Shim, H.K, Lee, S.C, Kwon, M.H, Kim, Y.S. | Deposit date: | 2006-04-02 | Release date: | 2006-04-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.88 Å) | Cite: | Heavy and light chain variable single domains of an anti-DNA binding antibody hydrolyze both double- and single-stranded DNAs without sequence specificity. J.Biol.Chem., 281, 2006
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8V1S
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![BU of 8v1s by Molmil](/molmil-images/mine/8v1s) | Herpes simplex virus 1 polymerase holoenzyme bound to mismatched DNA in editing conformation | Descriptor: | DNA polymerase, DNA polymerase processivity factor, MAGNESIUM ION, ... | Authors: | Pan, J, Abraham, J, Coen, D.M, Shankar, S, Yang, P, Hogle, J. | Deposit date: | 2023-11-21 | Release date: | 2024-09-04 | Method: | ELECTRON MICROSCOPY (3.26 Å) | Cite: | Viral DNA polymerase structures reveal mechanisms for drug selectivity Cell(Cambridge,Mass.), 2024
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8EXX
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![BU of 8exx by Molmil](/molmil-images/mine/8exx) | Herpes simplex virus 1 polymerase holoenzyme bound to DNA and foscarnet (pre-translocation state) | Descriptor: | DNA polymerase, DNA polymerase processivity factor, MAGNESIUM ION, ... | Authors: | Pan, J, Abraham, J, Coen, D.M, Shankar, S, Yang, P, Hogle, J. | Deposit date: | 2022-10-26 | Release date: | 2024-09-04 | Method: | ELECTRON MICROSCOPY (3.3 Å) | Cite: | Viral DNA polymerase structures reveal mechanisms for drug selectivity Cell(Cambridge,Mass.), 2024
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4XBA
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![BU of 4xba by Molmil](/molmil-images/mine/4xba) | Hnt3 | Descriptor: | Aprataxin-like protein, GLYCEROL, GUANOSINE, ... | Authors: | Jacewicz, A, Chauleau, M, Shuman, S. | Deposit date: | 2014-12-16 | Release date: | 2015-06-03 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | DNA3'pp5'G de-capping activity of aprataxin: effect of cap nucleoside analogs and structural basis for guanosine recognition. Nucleic Acids Res., 43, 2015
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2MAV
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![BU of 2mav by Molmil](/molmil-images/mine/2mav) | NMR Structure of N2-IQ-dG at the G3 position in the NarI recognition sequence | Descriptor: | DNA_(5'-D(*CP*TP*CP*GP*GP*CP*GP*CP*CP*AP*TP*C)-3'), DNA_(5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3') | Authors: | Stavros, K.M, Hawkins, E.K, Rizzo, C.J, Stone, M.P. | Deposit date: | 2013-07-18 | Release date: | 2014-05-14 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Base-displaced intercalation of the 2-amino-3-methylimidazo[4,5-f]quinolone N2-dG adduct in the NarI DNA recognition sequence. Nucleic Acids Res., 42, 2014
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8J89
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![BU of 8j89 by Molmil](/molmil-images/mine/8j89) | |
8J8B
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![BU of 8j8b by Molmil](/molmil-images/mine/8j8b) | |
8J87
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![BU of 8j87 by Molmil](/molmil-images/mine/8j87) | Asfv topoisomerase 2 - apo conformer Ia | Descriptor: | DNA topoisomerase 2 | Authors: | Chang, C.-W, Tsai, M.-D. | Deposit date: | 2023-05-01 | Release date: | 2024-02-07 | Last modified: | 2024-04-17 | Method: | ELECTRON MICROSCOPY (3.42 Å) | Cite: | A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase. Commun Chem, 7, 2024
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8J8C
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![BU of 8j8c by Molmil](/molmil-images/mine/8j8c) | |
8J88
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![BU of 8j88 by Molmil](/molmil-images/mine/8j88) | Asfv topoisomerase 2 - apo conformer Ib | Descriptor: | DNA topoisomerase 2 | Authors: | Chang, C.-W, Tsai, M.-D. | Deposit date: | 2023-05-01 | Release date: | 2024-02-07 | Last modified: | 2024-04-17 | Method: | ELECTRON MICROSCOPY (3.49 Å) | Cite: | A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase. Commun Chem, 7, 2024
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8J8A
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![BU of 8j8a by Molmil](/molmil-images/mine/8j8a) | |
8V1R
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![BU of 8v1r by Molmil](/molmil-images/mine/8v1r) | Herpes simplex virus 1 polymerase holoenzyme bound to DNA and DTTP in closed conformation | Descriptor: | DNA polymerase, DNA polymerase processivity factor, MAGNESIUM ION, ... | Authors: | Pan, J, Abraham, J, Coen, D.M, Shankar, S, Yang, P, Hogle, J. | Deposit date: | 2023-11-21 | Release date: | 2024-09-04 | Method: | ELECTRON MICROSCOPY (2.9 Å) | Cite: | Viral DNA polymerase structures reveal mechanisms for drug selectivity Cell(Cambridge,Mass.), 2024
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8V1Q
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![BU of 8v1q by Molmil](/molmil-images/mine/8v1q) | Herpes simplex virus 1 polymerase holoenzyme bound to DNA in both open/closed conformations | Descriptor: | DNA polymerase, DNA polymerase processivity factor, MAGNESIUM ION, ... | Authors: | Pan, J, Abraham, J, Coen, D.M, Shankar, S, Yang, P, Hogle, J. | Deposit date: | 2023-11-21 | Release date: | 2024-09-04 | Method: | ELECTRON MICROSCOPY (2.7 Å) | Cite: | Viral DNA polymerase structures reveal mechanisms for drug selectivity Cell(Cambridge,Mass.), 2024
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7TG2
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![BU of 7tg2 by Molmil](/molmil-images/mine/7tg2) | [T:Ag+/Hg2+:T--(pH8.5-pH11; 90s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 90s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-01-11 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (4.37 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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7TFZ
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![BU of 7tfz by Molmil](/molmil-images/mine/7tfz) | [T:Ag+/Hg2+:T--(pH8.5-pH11; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 5s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-01-11 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (6.13 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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7TG0
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![BU of 7tg0 by Molmil](/molmil-images/mine/7tg0) | [T:Ag+/Hg2+:T--(pH8.5-pH11; 30s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 30s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-01-11 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (6.05 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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7TG1
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![BU of 7tg1 by Molmil](/molmil-images/mine/7tg1) | [T:Ag+/Hg2+:T--(pH8.5-pH11; 60s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 60s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-01-11 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (4.85 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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7TFV
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![BU of 7tfv by Molmil](/molmil-images/mine/7tfv) | [T:Ag+/Hg2+:T--(pH11-pH7; 60s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 60s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-01-25 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (4.23 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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7TG4
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![BU of 7tg4 by Molmil](/molmil-images/mine/7tg4) | [T:Ag+/Hg2+:T--(pH11-pH7; 5s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 with Ag+ and Hg2+ for 5s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-01-25 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (5.21 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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7TFU
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![BU of 7tfu by Molmil](/molmil-images/mine/7tfu) | [T:Ag+/Hg2+:T--(pH11-pH7; 30s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 30s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-01-25 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (4.55 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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7TFT
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![BU of 7tft by Molmil](/molmil-images/mine/7tft) | [T:Ag+/Hg2+:T--(pH11-pH7; 5s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 5s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-01-25 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (4.42 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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7TFX
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![BU of 7tfx by Molmil](/molmil-images/mine/7tfx) | [T:Ag+/Hg2+:T--(pH11-pH7; 120s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 120s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-01-25 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (4.99 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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7TFW
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![BU of 7tfw by Molmil](/molmil-images/mine/7tfw) | [T:Ag+/Hg2+:T--(pH11-pH7; 60s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 60s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-01-25 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (3.92 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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7TG3
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![BU of 7tg3 by Molmil](/molmil-images/mine/7tg3) | [T:Ag+/Hg2+:T--(pH8.5-pH11; 300s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 for 300s | Descriptor: | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... | Authors: | Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-01-07 | Release date: | 2023-02-01 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (4.59 Å) | Cite: | Crystallographic pH Titration of Silver and Mercury Mediated DNA Base Pairs To Be Published
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