PDB: 910 resultsInfo pagesStatus searchChemie searchBIRD

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2A50	fluorescent protein asFP595, wt, off-state Descriptor: GFP-like non-fluorescent chromoprotein FP595 chain 1, GFP-like non-fluorescent chromoprotein FP595 chain 2 Authors: Andresen, M, Wahl, M.C, Stiel, A.C, Graeter, F, Schaefer, L, Trowitzsch, S, Weber, G, Eggeling, C, Grubmueller, H, Hell, S.W, Jakobs, S. Deposit date: 2005-06-30 Release date: 2005-08-16 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Structure and mechanism of the reversible photoswitch of a fluorescent protein Proc.Natl.Acad.Sci.Usa, 102, 2005
2H6V	Spectroscopic and structural study of the heterotropic linkage between halide and proton ion binding to GFP proteins- E2(GFP) APO FORM Descriptor: Green fluorescent protein, SODIUM ION Authors: Garau, G. Deposit date: 2006-06-01 Release date: 2007-05-15 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Spectroscopic and Structural Study of Proton and Halide Ion Cooperative Binding to GFP Biophys.J., 93, 2007
1Z1Q	Y66L Variant of Enhanced Green Fluorescent Protein with 374-nm Absorbing Chromophore Descriptor: Green Fluorescent Protein, SODIUM ION Authors: Rosenow, M.A, Patel, H.N, Wachter, R.M. Deposit date: 2005-03-04 Release date: 2005-06-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Oxidative Chemistry in the GFP Active Site Leads to Covalent Cross-Linking of a Modified Leucine Side Chain with a Histidine Imidazole: Implications for the Mechanism of Chromophore Formation. Biochemistry, 44, 2005
1YHG	Uncyclized precursor structure of S65G Y66S V68G GFP variant Descriptor: green fluorescent protein Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2005-01-07 Release date: 2005-02-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry. Biochemistry, 44, 2005
2A56	fluorescent protein asFP595, A143S, on-state, 5min irradiation Descriptor: GFP-like non-fluorescent chromoprotein FP595 chain 1, GFP-like non-fluorescent chromoprotein FP595 chain 2 Authors: Andresen, M, Wahl, M.C, Stiel, A.C, Graeter, F, Schaefer, L, Trowitzsch, S, Weber, G, Eggeling, C, Grubmueller, H, Hell, S.W, Jakobs, S. Deposit date: 2005-06-30 Release date: 2005-08-16 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure and mechanism of the reversible photoswitch of a fluorescent protein Proc.Natl.Acad.Sci.Usa, 102, 2005
2A46	Crystal structures of amFP486, a cyan fluorescent protein from Anemonia majano, and variants Descriptor: BETA-MERCAPTOETHANOL, GFP-like fluorescent chromoprotein amFP486 Authors: Henderson, J.N, Remington, S.J. Deposit date: 2005-06-28 Release date: 2005-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structures and mutational analysis of amFP486, a cyan fluorescent protein from Anemonia majano Proc.Natl.Acad.Sci.Usa, 102, 2005
2HPW	Green fluorescent protein from Clytia gregaria Descriptor: Green fluorescent protein Authors: Stepanyuk, G, Liu, Z.J, Vysotski, S.E, Lee, J, Rose, J.P, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG) Deposit date: 2006-07-17 Release date: 2006-09-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal Structure of Green Fluorescent Protein from Clytia Gregaria at 1.55 A resolution To be Published
1XAE	Crystal structure of wild type yellow fluorescent protein zFP538 from Zoanthus Descriptor: BETA-MERCAPTOETHANOL, fluorescent protein FP538 Authors: Remington, S.J, Wachter, R.M, Yarbrough, D.K, Branchaud, B, Anderson, D.C, Kallio, K, Lukyanov, K.A. Deposit date: 2004-08-25 Release date: 2005-02-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.7 Å) Cite: zFP538, a yellow-fluorescent protein from Zoanthus, contains a novel three-ring chromophore. Biochemistry, 44, 2005
2HRS	Crystal structure of L42H V224H design intermediate for GFP metal ion reporter Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, MAGNESIUM ION Authors: Barondeau, D.P, Tubbs, J.L, Tainer, J.A, Getzoff, E.D. Deposit date: 2006-07-20 Release date: 2008-04-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Iterative Structure-Based Design of a Green Fluorescent Protein Metal Ion Reporter To be Published
2HJO	Crystal structure of V224H design intermediate for GFP metal ion reporter Descriptor: 1,2-ETHANEDIOL, Green Fluorescent Protein, MAGNESIUM ION Authors: Barondeau, D.P, Tubbs, J.L, Tainer, J.A, Getzoff, E.D. Deposit date: 2006-06-30 Release date: 2008-04-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Iterative Structure-Based Design of a Green Fluorescent Protein Metal Ion Reporter To be Published
2HQZ	Crystal structure of L42H design intermediate for GFP metal ion reporter Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, MAGNESIUM ION Authors: Barondeau, D.P, Tubbs, J.L, Tainer, J.A, Getzoff, E.D. Deposit date: 2006-07-19 Release date: 2008-04-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Iterative Structure-Based Design of a Green Fluorescent Protein Metal Ion Reporter To be Published
1XQM	Variations on the GFP chromophore scaffold: A fragmented 5-membered heterocycle revealed in the 2.1A crystal structure of a non-fluorescent chromoprotein Descriptor: ACETIC ACID, kindling fluorescent protein Authors: Wilmann, P.G, Petersen, J, Devenish, R.J, Prescott, M, Rossjohn, J. Deposit date: 2004-10-13 Release date: 2004-11-16 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Variations on the GFP chromophore: A polypeptide fragmentation within the chromophore revealed in the 2.1-A crystal structure of a nonfluorescent chromoprotein from Anemonia sulcata J.Biol.Chem., 280, 2005
1YHH	Uncyclized precursor structure of S65A Y66S G67A GFP variant Descriptor: green fluorescent protein Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2005-01-07 Release date: 2005-02-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry. Biochemistry, 44, 2005
2A53	fluorescent protein asFP595, A143S, off-state Descriptor: CHLORIDE ION, GFP-like non-fluorescent chromoprotein FP595 chain 1, GFP-like non-fluorescent chromoprotein FP595 chain 2 Authors: Andresen, M, Wahl, M.C, Stiel, A.C, Graeter, F, Schaefer, L, Trowitzsch, S, Weber, G, Eggeling, C, Grubmueller, H, Hell, S.W, Jakobs, S. Deposit date: 2005-06-30 Release date: 2005-08-16 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Structure and mechanism of the reversible photoswitch of a fluorescent protein Proc.Natl.Acad.Sci.Usa, 102, 2005
2A48	Crystal structure of amFP486 E150Q Descriptor: BETA-MERCAPTOETHANOL, GFP-like fluorescent chromoprotein amFP486 Authors: Henderson, J.N, Remington, S.J. Deposit date: 2005-06-28 Release date: 2005-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structures and mutational analysis of amFP486, a cyan fluorescent protein from Anemonia majano Proc.Natl.Acad.Sci.Usa, 102, 2005
2GX2	Crystal structural and functional analysis of GFP-like fluorescent protein Dronpa Descriptor: MAGNESIUM ION, fluorescent protein Dronpa Authors: Hwang, K.Y, Nam, K.-H, Park, S.-Y, Sugiyama, K. Deposit date: 2006-05-08 Release date: 2007-05-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S Biochem.Biophys.Res.Commun., 354, 2007
2H5Q	Crystal structure of mCherry Descriptor: mCherry Authors: Shu, X, Remington, S.J. Deposit date: 2006-05-26 Release date: 2006-08-22 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (1.36 Å) Cite: Novel Chromophores and Buried Charges Control Color in mFruits Biochemistry, 45, 2006
2HFC	Structure of S65T Y66F R96A GFP variant in precursor state Descriptor: Green fluorescent protein, MAGNESIUM ION Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2006-06-23 Release date: 2007-03-27 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.2 Å) Cite: The Case of the Missing Ring: Radical Cleavage of a Carbon-Carbon Bond and Implications for GFP Chromophore Biosynthesis J.Am.Chem.Soc., 129, 2007
2GX0	Crystal structural and functional analysis of GFP-like fluorescent protein Descriptor: fluorescent protein Dronpa Authors: Hwang, K.Y, Nam, K.-H, Park, S.-Y, Sugiyama, K. Deposit date: 2006-05-08 Release date: 2007-05-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S Biochem.Biophys.Res.Commun., 354, 2007
2AH8	roGFP1-R7. Cystal structure analysis of a rate-enhanced variant of redox-sensitive green fluorescent protein in the oxidized form. Descriptor: Green fluorescent protein, IMIDAZOLE Authors: Cannon, M.B, Remington, S.J. Deposit date: 2005-07-27 Release date: 2006-03-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Re-engineering redox-sensitive green fluorescent protein for improved response rate. Protein Sci., 15, 2006
2H8Q	Crystal Structure of a Redshifted Mutant (K83M) of the Red Fluorescent Protein dRFP583/dsRed Descriptor: Red fluorescent protein drFP583 Authors: Yarbrough, C.A, Remington, S.J. Deposit date: 2006-06-07 Release date: 2006-08-22 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Novel Chromophores and Buried Charges Control Color in mFruits(,). Biochemistry, 45, 2006
6M9Z	X-ray Structure of Branchiostoma floridae fluorescent protein lanFP6G Descriptor: Fluorescent protein lanFP6G Authors: Muslinkina, L, Pletneva, N, Pletnev, V, Pletnev, S. Deposit date: 2018-08-24 Release date: 2019-04-03 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue. J. Mol. Biol., 431, 2019
6LR7	Crystal structure of GFPuv complexed with the nanobody LaG16 at 1.67 Angstron resolution Descriptor: Green fluorescent protein, Nanobody LaG16 Authors: Zhang, Z.Y, Ding, Y, Hattori, M. Deposit date: 2020-01-15 Release date: 2020-04-29 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Structure-based engineering of anti-GFP nanobody tandems as ultra-high-affinity reagents for purification. Sci Rep, 10, 2020
6M9Y	X-ray Structure of Branchiostoma floridae fluorescent protein lanFP6A Descriptor: Fluorescent protein lanFP6A Authors: Muslinkina, L, Pletneva, N, Pletnev, V, Pletnev, S. Deposit date: 2018-08-24 Release date: 2019-03-13 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue. J. Mol. Biol., 431, 2019
6MDR	Cryo-EM structure of the Ceru+32/GFP-17 protomer Descriptor: Ceru+32, GFP-17 Authors: Simon, A.J, Zhou, Y, Ramasubramani, V, Glaser, J, Pothukuchy, A, Golihar, J, Gerberich, J.C, Leggere, J.C, Morrow, B.R, Jung, C, Glotzer, S.C, Taylor, D.W, Ellington, A.D. Deposit date: 2018-09-05 Release date: 2019-01-23 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.47 Å) Cite: Supercharging enables organized assembly of synthetic biomolecules. Nat Chem, 11, 2019

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