Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1ZFV
DownloadVisualize
BU of 1zfv by Molmil
The structure of an all-RNA minimal Hairpin Ribozyme with Mutation G8A at the cleavage site
Descriptor: 5'-R(*CP*GP*GP*UP*GP*AP*AP*AP*AP*GP*GP*G)-3', 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3', 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*G)-3', ...
Authors:Wedekind, J.E.
Deposit date:2005-04-20
Release date:2006-02-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Water in the Active Site of an All-RNA Hairpin Ribozyme and Effects of Gua8 Base Variants on the Geometry of Phosphoryl Transfer.
Biochemistry, 45, 2006
2ANS
DownloadVisualize
BU of 2ans by Molmil
ADIPOCYTE LIPID BINDING PROTEIN COMPLEXED WITH 1-ANILINO-8-NAPHTHALENE SULFONATE
Descriptor: 8-ANILINO-1-NAPHTHALENE SULFONATE, ADIPOCYTE LIPID-BINDING PROTEIN, CHLORIDE ION
Authors:Ory, J.J, Banaszak, L.J.
Deposit date:1999-01-19
Release date:1999-07-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Studies of the ligand binding reaction of adipocyte lipid binding protein using the fluorescent probe 1, 8-anilinonaphthalene-8-sulfonate.
Biophys.J., 77, 1999
3UII
DownloadVisualize
BU of 3uii by Molmil
crystal structure of human Survivin in complex with H3(1-10) peptide
Descriptor: Baculoviral IAP repeat-containing protein 5, ZINC ION, histone H3(1-10) peptide
Authors:Du, J, Patel, D.J.
Deposit date:2011-11-04
Release date:2012-02-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for Recognition of H3T3ph and Smac/DIABLO N-terminal Peptides by Human Survivin.
Structure, 20, 2012
8S9I
DownloadVisualize
BU of 8s9i by Molmil
Crystal structure of the gp32 C-terminal peptide/Dda/dT8
Descriptor: Dda helicase, dT8, gp32 C-terminal peptide
Authors:He, X, Yun, M.K, White, S.W.
Deposit date:2023-03-28
Release date:2023-06-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.53 Å)
Cite:Crystal structure of the gp32 C-terminal peptide/Dda/dT8
To Be Published
3FEP
DownloadVisualize
BU of 3fep by Molmil
Crystal structure of the R132K:R111L:L121E:R59W-CRABPII mutant complexed with a synthetic ligand (merocyanin) at 2.60 angstrom resolution.
Descriptor: (2E,4E,6E)-3-methyl-6-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)hexa-2,4-dienal, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Cellular retinoic acid-binding protein 2
Authors:Jia, X, Geiger, J.H.
Deposit date:2008-11-30
Release date:2009-11-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:"Turn-on" protein fluorescence: in situ formation of cyanine dyes.
J.Am.Chem.Soc., 137, 2015
1XGJ
DownloadVisualize
BU of 1xgj by Molmil
AmpC beta-lactamase in complex with 3-(4-carboxy-2-hydroxy-phenylsulfamoyl)-thiophene-2-carboxylic acid
Descriptor: 3-{[(4-CARBOXY-2-HYDROXYANILINE]SULFONYL}THIOPHENE-2-CARBOXYLIC ACID, Beta-lactamase
Authors:Tondi, D, Morandi, F, Bonnet, R, Costi, M.P, Shoichet, B.K.
Deposit date:2004-09-17
Release date:2005-05-03
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structure-based optimization of a non-beta-lactam lead results in inhibitors that do not up-regulate beta-lactamase expression in cell culture.
J.Am.Chem.Soc., 127, 2005
2O9C
DownloadVisualize
BU of 2o9c by Molmil
Crystal Structure of Bacteriophytochrome chromophore binding domain at 1.45 angstrom resolution
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Wagner, J.R, Brunzelle, J.S, Vierstra, R.D, Forest, K.T.
Deposit date:2006-12-13
Release date:2007-03-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High resolution structure of deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution.
J.Biol.Chem., 282, 2007
3FA9
DownloadVisualize
BU of 3fa9 by Molmil
Crystal structure of the apo R132K:Y134F:R111L:L121D mutant of cellular retinoic acid-binding protein II at 1.94 angstrom resolution
Descriptor: ACETATE ION, Cellular retinoic acid-binding protein 2
Authors:Jia, X, Geiger, J.H.
Deposit date:2008-11-16
Release date:2009-10-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structures of apo cellular retinoic acid-binding protein II mutants: Structural integrity investigated through multiple site mutations
To be Published
2XDV
DownloadVisualize
BU of 2xdv by Molmil
Crystal Structure of the Catalytic Domain of FLJ14393
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, MANGANESE (II) ION, ...
Authors:Krojer, T, Muniz, J.R.C, Ng, S.S, Pilka, E, Guo, K, Pike, A.C.W, Filippakopoulos, P, Knapp, S, Kavanagh, K.L, Gileadi, O, Bunkoczi, G, Yue, W.W, Niesen, F, Sobott, F, Fedorov, O, Savitsky, P, Kochan, G, Daniel, M, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bountra, C, Oppermann, U.
Deposit date:2010-05-07
Release date:2010-05-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Ribosomal oxygenases are structurally conserved from prokaryotes to humans.
Nature, 510, 2014
7JVW
DownloadVisualize
BU of 7jvw by Molmil
Crystal structure of human histone deacetylase 8 (HDAC8) G320R mutation complexed with M344
Descriptor: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide, Histone deacetylase 8, POTASSIUM ION, ...
Authors:Osko, J.D, Christianson, D.W, Decroos, C, Porter, N.J, Lee, M.
Deposit date:2020-08-24
Release date:2020-12-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.40301776 Å)
Cite:Structural analysis of histone deacetylase 8 mutants associated with Cornelia de Lange Syndrome spectrum disorders.
J.Struct.Biol., 213, 2020
2E9T
DownloadVisualize
BU of 2e9t by Molmil
Foot-and-mouth disease virus RNA-polymerase RNA dependent in complex with a template-primer RNA and 5F-UTP
Descriptor: 5'-R(*GP*GP*GP*CP*CP*CP*(5FU))-3', 5'-R(P*UP*AP*GP*GP*GP*CP*CP*C)-3', MAGNESIUM ION, ...
Authors:Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N.
Deposit date:2007-01-26
Release date:2007-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Sequential structures provide insights into the fidelity of RNA replication
Proc.Natl.Acad.Sci.Usa, 104, 2007
7MK3
DownloadVisualize
BU of 7mk3 by Molmil
Crystal structure of NPR1
Descriptor: CHLORIDE ION, GLYCEROL, Regulatory protein NPR1, ...
Authors:Cheng, J, Wu, Q, Zhou, P.
Deposit date:2021-04-21
Release date:2022-03-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structural basis of NPR1 in activating plant immunity.
Nature, 605, 2022
7MLK
DownloadVisualize
BU of 7mlk by Molmil
Crystal structure of human PI3Ka (p110a subunit) with MMV085400 bound to the active site determined at 2.9 angstroms resolution
Descriptor: 4-[6-(3,4,5-trimethoxyanilino)pyrazin-2-yl]benzamide, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Krake, S.H, Martinez, P.D.G, Poggi, M.L, Ferreira, M.S, Aguiar, A.C.C, Souza, G.E, Wenlock, M, Jones, B, Steinbrecher, T, Day, T, McPhail, J, Burke, J, Yeo, T, Mok, S, Uhlemann, A.C, Fidock, D.A, Chen, P, Grodsky, N, Deng, Y.L, Guido, R.V.C, Campbell, S.F, Willis, P.A, Dias, L.C.
Deposit date:2021-04-28
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Discovery of 2,6-disubstituted pyrazines as potent PI4K inhibitors with antimalarial activity
To Be Published
2E9Z
DownloadVisualize
BU of 2e9z by Molmil
Foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA, ATP and UTP
Descriptor: 5'-R(*CP*AP*UP*GP*GP*GP*CP*CP*C)-3', 5'-R(*GP*GP*GP*CP*CP*CP*A)-3', MAGNESIUM ION, ...
Authors:Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N.
Deposit date:2007-01-29
Release date:2007-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Sequential structures provide insights into the fidelity of RNA replication
Proc.Natl.Acad.Sci.Usa, 104, 2007
3DVT
DownloadVisualize
BU of 3dvt by Molmil
Biochemical and structural characterization of the PAK1- LC8 interaction
Descriptor: Dynein light chain 1, cytoplasmic
Authors:LIghtcap, C.M, Williams, J.C.
Deposit date:2008-07-20
Release date:2009-05-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Biochemical and structural characterization of the Pak1-LC8 interaction.
J.Biol.Chem., 283, 2008
3DWY
DownloadVisualize
BU of 3dwy by Molmil
Crystal Structure of the Bromodomain of Human CREBBP
Descriptor: 1,2-ETHANEDIOL, CREB-binding protein
Authors:Filippakopoulos, P, Picaud, S, Fedorov, O, Karim, R, Pike, A.C.W, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Wickstroem, M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2008-07-23
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Histone recognition and large-scale structural analysis of the human bromodomain family.
Cell(Cambridge,Mass.), 149, 2012
1XTI
DownloadVisualize
BU of 1xti by Molmil
Structure of Wildtype human UAP56
Descriptor: ISOPROPYL ALCOHOL, Probable ATP-dependent RNA helicase p47
Authors:Shi, H, Cordin, O, Minder, C.M, Linder, P, Xu, R.M.
Deposit date:2004-10-21
Release date:2004-12-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the human ATP-dependent splicing and export factor UAP56
Proc.Natl.Acad.Sci.Usa, 101, 2004
7JVV
DownloadVisualize
BU of 7jvv by Molmil
Crystal structure of human histone deacetylase 8 (HDAC8) E66D/Y306F double mutation complexed with a tetrapeptide substrate
Descriptor: 1,2-ETHANEDIOL, ACE-ARG-HIS-ALY-ALY-MCM, GLYCEROL, ...
Authors:Osko, J.D, Christianson, D.W, Decroos, C, Porter, N.J, Lee, M.
Deposit date:2020-08-24
Release date:2020-12-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural analysis of histone deacetylase 8 mutants associated with Cornelia de Lange Syndrome spectrum disorders.
J.Struct.Biol., 213, 2020
3DVH
DownloadVisualize
BU of 3dvh by Molmil
LC8 Point mutant K36P
Descriptor: Dynein light chain 1, cytoplasmic
Authors:Lightcap, C.M, Williams, J.C.
Deposit date:2008-07-18
Release date:2009-01-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Biochemical and structural characterization of the Pak1-LC8 interaction.
J.Biol.Chem., 283, 2008
3DVP
DownloadVisualize
BU of 3dvp by Molmil
Pak1 peptide bound LC8
Descriptor: Dynein light chain 1, cytoplasmic, P21 activated Kinase peptide
Authors:Lightcap, C.M, Williams, J.C.
Deposit date:2008-07-18
Release date:2009-01-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Biochemical and structural characterization of the Pak1-LC8 interaction.
J.Biol.Chem., 283, 2008
1ZAJ
DownloadVisualize
BU of 1zaj by Molmil
Fructose-1,6-bisphosphate aldolase from rabbit muscle in complex with mannitol-1,6-bisphosphate, a competitive inhibitor
Descriptor: D-MANNITOL-1,6-DIPHOSPHATE, Fructose-bisphosphate aldolase A
Authors:St-Jean, M, Lafrance-Vanasse, J, Liotard, B, Sygusch, J.
Deposit date:2005-04-06
Release date:2005-05-10
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:High Resolution Reaction Intermediates of Rabbit Muscle Fructose-1,6-bisphosphate Aldolase: substrate cleavage and induced fit.
J.Biol.Chem., 280, 2005
7NH4
DownloadVisualize
BU of 7nh4 by Molmil
Co-Crystal Structure of Akt1 in Complex with Covalent-Allosteric Akt Inhibitor 3
Descriptor: ACETATE ION, RAC-alpha serine/threonine-protein kinase, ~{N}-[3-[1-[[4-[5-(hydroxymethyl)-3-phenyl-pyridin-2-yl]phenyl]methyl]piperidin-4-yl]-2-oxidanylidene-1~{H}-benzimidazol-5-yl]propanamide
Authors:Landel, I, Mueller, M.P, Rauh, D.
Deposit date:2021-02-10
Release date:2021-09-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Cellular model system to dissect the isoform-selectivity of Akt inhibitors.
Nat Commun, 12, 2021
7NH5
DownloadVisualize
BU of 7nh5 by Molmil
Co-Crystal Structure of Akt1 in Complex with Covalent-Allosteric Akt Inhibitor 6
Descriptor: ACETATE ION, RAC-alpha serine/threonine-protein kinase, ~{N}-methyl-6-[4-[[4-[2-oxidanylidene-6-(propanoylamino)-3~{H}-benzimidazol-1-yl]piperidin-1-yl]methyl]phenyl]-5-phenyl-pyridine-3-carboxamide
Authors:Landel, I, Mueller, M.P, Rauh, D.
Deposit date:2021-02-10
Release date:2021-09-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cellular model system to dissect the isoform-selectivity of Akt inhibitors.
Nat Commun, 12, 2021
2OU2
DownloadVisualize
BU of 2ou2 by Molmil
Acetyltransferase domain of Human HIV-1 Tat interacting protein, 60kDa, isoform 3
Descriptor: ACETYL COENZYME *A, Histone acetyltransferase HTATIP, ZINC ION
Authors:Min, J, Wu, H, Dombrovski, L, Loppnau, P, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2007-02-09
Release date:2007-02-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Crystal Structure of acetyltransferase domain of Human HIV-1 Tat interacting protein in complex with acetylcoenzyme A.
To be Published
3AHU
DownloadVisualize
BU of 3ahu by Molmil
Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.
Descriptor: 5'-R(*AP*GP*AP*GP*AP*G)-3', Protein hfq
Authors:Baba, S, Someya, T, Kumasaka, T, Kawai, G, Nakamura, K.
Deposit date:2010-04-29
Release date:2011-07-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.
To be Published

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon