PDB Search results for query - Protein Data Bank Japan

PDB: 313 results

Crystal Structure of Staphylococcal nuclease variant D+PHS/V66K at pH 9 determined at 100 K
Descriptor:	CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:	Schlessman, J.L, De Luca-Westrate, J.N, Garcia-Moreno, B.E.
Deposit date:	2009-06-24
Release date:	2010-05-19
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structure of Staphylococcal nuclease D+PHS/V66K reveals internal hydration in protein cavity To be Published

1EYA

STRUCTURE OF S. NUCLEASE STABILIZING QUINTUPLE MUTANT T33V/T41I/P117G/H124L/S128A
Descriptor:	STAPHYLOCOCCAL NUCLEASE
Authors:	Chen, J, Lu, Z, Sakon, J, Stites, W.E.
Deposit date:	2000-05-05
Release date:	2000-10-18
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Increasing the thermostability of staphylococcal nuclease: implications for the origin of protein thermostability. J.Mol.Biol., 303, 2000

4K8J

Crystal Structure of Staphylococcal nuclease mutant V23L/V66I
Descriptor:	Thermonuclease
Authors:	Sanders, J.M, Gill, E, Roeser, J.R, Janowska, K, Sakon, J, Stites, W.E.
Deposit date:	2013-04-18
Release date:	2013-05-01
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Hydrophobic core mutants of Staphylococcal nuclease To be Published

1F2M

SIMPLIFICATION OF A PROTEIN LOOP IN STAPHYLOCOCCAL NUCLEASE
Descriptor:	STAPHYLOCOCCAL NUCLEASE
Authors:	Hodel, A, Harkins, P.C, Adelman, D.M, White, M.A, Fox, R.O.
Deposit date:	2000-05-26
Release date:	2003-09-16
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Simplification of a Protein Loop in Staphylococcal Nuclease To be Published

2EY5

Crystal structure of Staphylococcal nuclease mutant T41S
Descriptor:	Staphylococcal nuclease
Authors:	Lu, J.Z, Sakon, J, Stites, W.E.
Deposit date:	2005-11-09
Release date:	2006-10-24
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Threonine mutants of Staphylococcal nuclease To be Published

1F2Y

SIMPLIFICATION OF A PROTEIN LOOP IN STAPHYLOCOCCAL NUCLEASE
Descriptor:	STAPHYLOCOCCAL NUCLEASE
Authors:	Hodel, A, Harkins, P.C, Adelman, D.M, White, M.A, Fox, R.O.
Deposit date:	2000-05-31
Release date:	2003-09-16
Last modified:	2024-02-07
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Simplification of a Protein Loop in Staphylococcal Nuclease To be Published

2OEO

Cryogenic crystal structure of Staphylococcal Nuclease variant truncated Delta+PHS I92D
Descriptor:	CALCIUM ION, Staphylococcal thermonuclease, THYMIDINE-3',5'-DIPHOSPHATE
Authors:	Reynald, R.L, Lattman, E.E, Gittis, A.G.
Deposit date:	2006-12-30
Release date:	2008-03-25
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Buried Charges and Water in the Protein Interior: Reality or Fiction? To be Published

3NHH

Crystal structure of Staphylococcal nuclease variant V23E-L36K at cryogenic temperature
Descriptor:	CALCIUM ION, Nuclease A, THYMIDINE-3',5'-DIPHOSPHATE
Authors:	Robinson, A.C, Schlessman, J.L, Garcia-Moreno, E.B.
Deposit date:	2010-06-14
Release date:	2010-06-30
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structural and thermodynamic consequences of burial of an artificial ion pair in the hydrophobic interior of a protein. Proc.Natl.Acad.Sci.USA, 111, 2014

3E5S

Crystal structure of Staphylococcal nuclease variant Delta+PHS L103K at cryogenic temperature
Descriptor:	CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:	Khangulov, V.S, Schlessman, J.L, Garcia-Moreno, E.B.
Deposit date:	2008-08-14
Release date:	2008-11-04
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal structure of Staphylococcal nuclease variant Delta+PHS L103K at cryogenic temperature To be Published

2NUC

STAPHLOCOCCAL NUCLEASE, ETHANE THIOL DISULFIDE TO V23C VARIANT
Descriptor:	CALCIUM ION, STAPHYLOCOCCAL NUCLEASE, THYMIDINE-3',5'-DIPHOSPHATE
Authors:	Wynn, R, Harkins, P.C, Richards, F.M, Fox, R.O.
Deposit date:	1997-12-06
Release date:	1998-03-18
Last modified:	2023-08-09
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Mobile unnatural amino acid side chains in the core of staphylococcal nuclease. Protein Sci., 5, 1996

3EVQ

Crystal structure of Staphylococcal nuclease variant Delta+PHS L25E at cryogenic temperature
Descriptor:	CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:	Robinson, A.C, Schlessman, J.L, Garcia-Moreno, E.B.
Deposit date:	2008-10-13
Release date:	2008-11-04
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal Structure of D+PHS L25E at cryogenic temperature To be Published

4E6I

Crystal structure of Staphylococcal nuclease variant NVIAGA V99G at cryogenic temperature
Descriptor:	(4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHATE ION, Thermonuclease
Authors:	Doctrow, B.M, Schlessman, J.L, Garcia-Moreno E, B.
Deposit date:	2012-03-15
Release date:	2012-04-18
Last modified:	2023-09-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Local flexibility as a determinant of pKa values of surface ionizable groups in proteins To be Published

1TQO

Cryogenic Crystal Structure of Staphylococcal Nuclease Variant truncated Delta+PHS I92E
Descriptor:	Thermonuclease
Authors:	Nguyen, D.M, Reynald, R.L, Gittis, A.G, Lattman, E.E.
Deposit date:	2004-06-17
Release date:	2004-07-06
Last modified:	2023-08-23
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	X-ray and thermodynamic studies of staphylococcal nuclease variants I92E and I92K: insights into polarity of the protein interior J.Mol.Biol., 341, 2004

2OXP

Crystal Structure of Staphylococcal Nuclease mutant V66D/P117G/H124L/S128A
Descriptor:	THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:	Garcia-Moreno, E.B, Gittis, A.G, Karp, D.A.
Deposit date:	2007-02-20
Release date:	2007-03-20
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	High apparent dielectric constant inside a protein reflects structural reorganization coupled to the ionization of an internal asp Biophys.J., 92, 2007

2RDF

Crystal Structure of staphyloccocal nuclease VIAGAN/E75A variant at cryogenic temperature
Descriptor:	PHOSPHATE ION, Thermonuclease
Authors:	Baran, K, Schlessman, J.L, Garcia-Moreno, B.E.
Deposit date:	2007-09-22
Release date:	2008-06-10
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.01 Å)
Cite:	Electrostatic effects in a network of polar and ionizable groups in staphylococcal nuclease. J.Mol.Biol., 379, 2008

2RKS

Crystal structure of Staphylococcal nuclease variant PHS L38K at cryogenic temperature
Descriptor:	PHOSPHATE ION, Thermonuclease
Authors:	Schlessman, J.L, Harms, M.J, Garcia-Moreno, E.B.
Deposit date:	2007-10-17
Release date:	2008-04-15
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.01 Å)
Cite:	A buried lysine that titrates with a normal pKa: role of conformational flexibility at the protein-water interface as a determinant of pKa values. Protein Sci., 17, 2008

1A3U

STAPHYLOCOCCAL NUCLEASE, CYCLOHEXANE THIOL DISULFIDE TO V23C VARIANT
Descriptor:	CALCIUM ION, STAPHYLOCOCCAL NUCLEASE, THYMIDINE-3',5'-DIPHOSPHATE
Authors:	Wynn, R, Harkins, P.C, Richards, F.M, Fox, R.O.
Deposit date:	1998-01-24
Release date:	1998-04-29
Last modified:	2023-08-02
Method:	X-RAY DIFFRACTION (2.05 Å)
Cite:	Comparison of straight chain and cyclic unnatural amino acids embedded in the core of staphylococcal nuclease. Protein Sci., 6, 1997

2ENB

CRYSTAL STRUCTURES OF THE BINARY CA2+ AND PDTP COMPLEXES AND THE TERNARY COMPLEX OF THE ASP 21->GLU MUTANT OF STAPHYLOCOCCAL NUCLEASE. IMPLICATIONS FOR CATALYSIS AND LIGAND BINDING
Descriptor:	STAPHYLOCOCCAL NUCLEASE, THYMIDINE-3',5'-DIPHOSPHATE
Authors:	Libson, A, Gittis, A, Lattman, E.E.
Deposit date:	1994-03-23
Release date:	1994-05-31
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.05 Å)
Cite:	Crystal structures of the binary Ca2+ and pdTp complexes and the ternary complex of the Asp21-->Glu mutant of staphylococcal nuclease. Implications for catalysis and ligand binding. Biochemistry, 33, 1994

2F0P

Crystal structure of Staphylococcal nuclease mutant V66I/V99I
Descriptor:	Staphylococcal nuclease
Authors:	Lu, J.Z, Sakon, J, Stites, W.E.
Deposit date:	2005-11-13
Release date:	2006-10-24
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.05 Å)
Cite:	Hydrophobic core mutants of Staphylococcal nuclease To be Published

2PZW

Crystal structure of Staphylococcal nuclease variant V66N/P117G/H124L/S128A at room temperature
Descriptor:	Thermonuclease
Authors:	Schlessman, J.L, Abe, C, Garcia-Moreno, E.B.
Deposit date:	2007-05-18
Release date:	2008-05-20
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Crystallographic study of hydration of an internal cavity in engineered proteins with buried polar or ionizable groups. Biophys.J., 94, 2008

2PW7

Crystal Structure of Staphylococcal nuclease variant V66Y/P117G/H124L/S128A at 100K
Descriptor:	Thermonuclease
Authors:	Schlessman, J.L, Abe, C, Garcia-Moreno, E.B.
Deposit date:	2007-05-10
Release date:	2008-04-22
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Crystallographic study of hydration of an internal cavity in engineered proteins with buried polar or ionizable groups. Biophys.J., 94, 2008

5EKK

Crystal structure of Staphylococcal nuclease variant Delta+PHS V39D/L125E at cryogenic temperature
Descriptor:	CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:	Skerritt, L.A, Bell-Upp, P.C, Siegler, M.A, Schlessman, J.L, Garcia-Moreno E, B.
Deposit date:	2015-11-03
Release date:	2015-11-18
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Crystal structure of Staphylococcal nuclease variant Delta+PHS V39D/L125E at cryogenic temperature To be Published

1AEX

STAPHYLOCOCCAL NUCLEASE, METHANE THIOL DISULFIDE TO V23C VARIANT
Descriptor:	CALCIUM ION, STAPHYLOCOCCAL NUCLEASE, THYMIDINE-3',5'-DIPHOSPHATE
Authors:	Wynn, R, Harkins, P.C, Richards, F.M, Fox, R.O.
Deposit date:	1997-03-01
Release date:	1997-06-16
Last modified:	2023-08-02
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Mobile unnatural amino acid side chains in the core of staphylococcal nuclease. Protein Sci., 5, 1996

2PYK

Crystal structure of Staphylococcal nuclease variant V66Q/P117G/H124L/S128A at room temperature
Descriptor:	Thermonuclease
Authors:	Schlessman, J.L, Abe, C, Garcia-Moreno, E.B.
Deposit date:	2007-05-16
Release date:	2008-05-20
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Crystallographic study of hydration of an internal cavity in engineered proteins with buried polar or ionizable groups. Biophys.J., 94, 2008

2PZT

Crystal structure of Staphylococcal nuclease variant V66Q/P117G/H124L/S128A at 100 K
Descriptor:	PHOSPHATE ION, Thermonuclease
Authors:	Schlessman, J.L, Abe, C, Garcia-Moreno, E.B.
Deposit date:	2007-05-18
Release date:	2008-05-20
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Crystallographic study of hydration of an internal cavity in engineered proteins with buried polar or ionizable groups. Biophys.J., 94, 2008

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Total results:	313
Displayed results:	25
Sorted by:	Resolution (from highest)
Other DB:	UniProt P00644\|Q8NXI6