7COY
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![BU of 7coy by Molmil](/molmil-images/mine/7coy) | Structure of the far-red light utilizing photosystem I of Acaryochloris marina | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, CHLOROPHYLL D, ... | 著者 | Kawakami, K, Yonekura, K, Hamaguchi, T, Kashino, Y, Shinzawa-Itoh, K, Inoue-Kashino, N, Itoh, S, Ifuku, K, Yamashita, E. | 登録日 | 2020-08-05 | 公開日 | 2021-03-31 | 最終更新日 | 2021-05-05 | 実験手法 | ELECTRON MICROSCOPY (2.5 Å) | 主引用文献 | Structure of the far-red light utilizing photosystem I of Acaryochloris marina. Nat Commun, 12, 2021
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8J5A
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![BU of 8j5a by Molmil](/molmil-images/mine/8j5a) | Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A) | 分子名称: | Ferritin heavy chain, SODIUM ION | 著者 | Kawakami, K, Maki-Yonekura, S, Hamaguchi, T, Takaba, K, Yonekura, K. | 登録日 | 2023-04-21 | 公開日 | 2023-07-12 | 最終更新日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (1.19 Å) | 主引用文献 | Measurement of charges and chemical bonding in a cryo-EM structure. Commun Chem, 6, 2023
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7VEB
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![BU of 7veb by Molmil](/molmil-images/mine/7veb) | Phycocyanin rod structure of cyanobacterial phycobilisome | 分子名称: | C-phycocyanin alpha subunit, C-phycocyanin beta subunit, PHYCOCYANOBILIN, ... | 著者 | Kawakami, K, Hamaguchi, T, Hirose, Y, Kosumi, D, Miyata, M, Kamiya, N, Yonekura, K. | 登録日 | 2021-09-08 | 公開日 | 2022-06-15 | 最終更新日 | 2022-08-17 | 実験手法 | ELECTRON MICROSCOPY (4.2 Å) | 主引用文献 | Core and rod structures of a thermophilic cyanobacterial light-harvesting phycobilisome. Nat Commun, 13, 2022
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7VEA
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![BU of 7vea by Molmil](/molmil-images/mine/7vea) | Pentacylindrical allophycocyanin core from Thermosynechococcus vulcanus | 分子名称: | Allophycocyanin alpha chain, Allophycocyanin beta chain, PHYCOCYANOBILIN, ... | 著者 | Kawakami, K, Hamaguchi, T, Hirose, Y, Kosumi, D, Miyata, M, Kamiya, N, Yonekura, K. | 登録日 | 2021-09-08 | 公開日 | 2022-06-22 | 最終更新日 | 2022-08-17 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | Core and rod structures of a thermophilic cyanobacterial light-harvesting phycobilisome. Nat Commun, 13, 2022
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3A0B
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![BU of 3a0b by Molmil](/molmil-images/mine/3a0b) | Crystal structure of Br-substituted Photosystem II complex | 分子名称: | (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE, ... | 著者 | Kawakami, K, Umena, Y, Kamiya, N, Shen, J.-R. | 登録日 | 2009-03-16 | 公開日 | 2009-05-19 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3.7 Å) | 主引用文献 | Location of chloride and its possible functions in oxygen-evolving photosystem II revealed by X-ray crystallography Proc.Natl.Acad.Sci.USA, 106, 2009
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3A0H
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![BU of 3a0h by Molmil](/molmil-images/mine/3a0h) | Crystal structure of I-substituted Photosystem II complex | 分子名称: | (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE, ... | 著者 | Kawakami, K, Umena, Y, Kamiya, N, Shen, J.-R. | 登録日 | 2009-03-17 | 公開日 | 2009-05-19 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (4 Å) | 主引用文献 | Location of chloride and its possible functions in oxygen-evolving photosystem II revealed by X-ray crystallography Proc.Natl.Acad.Sci.USA, 106, 2009
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8WEY
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![BU of 8wey by Molmil](/molmil-images/mine/8wey) | PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137) | 分子名称: | (1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R} )-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BETA-CAROTENE, ... | 著者 | Kato, K, Hamaguchi, T, Nakajima, Y, Kawakami, K, Yonekura, K, Shen, J.R, Nagao, R. | 登録日 | 2023-09-19 | 公開日 | 2024-02-14 | 最終更新日 | 2024-03-13 | 実験手法 | ELECTRON MICROSCOPY (1.92 Å) | 主引用文献 | The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proc.Natl.Acad.Sci.USA, 121, 2024
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5GJE
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![BU of 5gje by Molmil](/molmil-images/mine/5gje) | Three-dimensional reconstruction of human LRP6 ectodomain complexed with Dkk1 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Matoba, K, Mihara, E, Tamura-Kawakami, K, Hirai, H, Thompson, S, Iwasaki, K, Takagi, J. | 登録日 | 2016-06-29 | 公開日 | 2017-01-18 | 最終更新日 | 2020-07-29 | 実験手法 | ELECTRON MICROSCOPY (21 Å) | 主引用文献 | Conformational Freedom of the LRP6 Ectodomain Is Regulated by N-glycosylation and the Binding of the Wnt Antagonist Dkk1 Cell Rep, 18, 2017
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4IL6
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![BU of 4il6 by Molmil](/molmil-images/mine/4il6) | Structure of Sr-substituted photosystem II | 分子名称: | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... | 著者 | Koua, F.H.M, Umena, Y, Kawakami, K, Kamiya, N, Shen, J.R. | 登録日 | 2012-12-29 | 公開日 | 2013-03-06 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Structure of Sr-substituted photosystem II at 2.1 A resolution and its implications in the mechanism of water oxidation Proc.Natl.Acad.Sci.USA, 110, 2013
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5H2F
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![BU of 5h2f by Molmil](/molmil-images/mine/5h2f) | Crystal structure of the PsbM-deletion mutant of photosystem II | 分子名称: | (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Uto, S, Kawakami, K, Umena, Y, Iwai, M, Ikeuchi, M, Shen, J.R, Kamiya, N. | 登録日 | 2016-10-15 | 公開日 | 2017-03-22 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Mutual relationships between structural and functional changes in a PsbM-deletion mutant of photosystem II. Faraday Discuss., 198, 2017
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3WKM
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![BU of 3wkm by Molmil](/molmil-images/mine/3wkm) | The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus in complex with the Fab fragment | 分子名称: | MOUSE IGG1-KAPPA FAB (HEAVY CHAIN), MOUSE IGG1-KAPPA FAB (LIGHT CHAIN), Putative zinc metalloprotease aq_1964 | 著者 | Nogi, T, Tabata, S, Tamura-kawakami, K, Takagi, J. | 登録日 | 2013-10-28 | 公開日 | 2013-12-18 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | A Structure-Based Model of Substrate Discrimination by a Noncanonical PDZ Tandem in the Intramembrane-Cleaving Protease RseP Structure, 22, 2013
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7EDA
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![BU of 7eda by Molmil](/molmil-images/mine/7eda) | Structure of monomeric photosystem II | 分子名称: | (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Yu, H, Hamaguchi, T, Nakajima, Y, Kato, K, kawakami, K, Akita, F, Yonekura, K, Shen, J.R. | 登録日 | 2021-03-15 | 公開日 | 2021-07-07 | 最終更新日 | 2021-08-04 | 実験手法 | ELECTRON MICROSCOPY (2.78 Å) | 主引用文献 | Cryo-EM structure of monomeric photosystem II at 2.78 angstrom resolution reveals factors important for the formation of dimer. Biochim Biophys Acta Bioenerg, 1862, 2021
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7F4V
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![BU of 7f4v by Molmil](/molmil-images/mine/7f4v) | Cryo-EM structure of a primordial cyanobacterial photosystem I | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | 著者 | Kato, K, Hamaguchi, T, Nagao, R, Kawakami, K, Yonekura, K, Shen, J.R. | 登録日 | 2021-06-21 | 公開日 | 2022-04-06 | 実験手法 | ELECTRON MICROSCOPY (2.04 Å) | 主引用文献 | Structural basis for the absence of low-energy chlorophylls responsible for photoprotection from a primitive cyanobacterial PSI Biorxiv, 2022
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3WKL
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3WU2
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![BU of 3wu2 by Molmil](/molmil-images/mine/3wu2) | Crystal structure analysis of Photosystem II complex | 分子名称: | (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Umena, Y, Kawakami, K, Shen, J.R, Kamiya, N. | 登録日 | 2014-04-21 | 公開日 | 2014-09-03 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 A Nature, 473, 2011
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7Y3F
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![BU of 7y3f by Molmil](/molmil-images/mine/7y3f) | Structure of the Anabaena PSI-monomer-IsiA supercomplex | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | 著者 | Nagao, R, Kato, K, Hamaguchi, T, Kawakami, K, Yonekura, K, Shen, J.R. | 登録日 | 2022-06-10 | 公開日 | 2023-03-01 | 最終更新日 | 2024-05-08 | 実験手法 | ELECTRON MICROSCOPY (2.62 Å) | 主引用文献 | Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120. Nat Commun, 14, 2023
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