Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 361 results

1RUP
DownloadVisualize
BU of 1rup by Molmil
Crystal structure (G) of native cationic cyclization antibody 4C6 fab at pH 8.5 with a data set collected at APS beamline 19-ID
Descriptor: BENZOIC ACID, GLYCEROL, immunoglobulin igg2a, ...
Authors:Zhu, X, Wentworth Jr, P, Wentworth, A.D, Eschenmoser, A, Lerner, R.A, Wilson, I.A.
Deposit date:2003-12-11
Release date:2004-03-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Probing the antibody-catalyzed water-oxidation pathway at atomic resolution.
Proc.Natl.Acad.Sci.USA, 110, 2004
1RU9
DownloadVisualize
BU of 1ru9 by Molmil
Crystal Structure (A) of u.v.-irradiated cationic cyclization antibody 4C6 Fab at pH 4.6 with a data set collected in-house.
Descriptor: ACETATE ION, BENZOIC ACID, GLYCEROL, ...
Authors:Zhu, X, Wentworth Jr, P, Wentworth, A.D, Eschenmoser, A, Lerner, R.A, Wilson, I.A.
Deposit date:2003-12-11
Release date:2004-03-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Probing the antibody-catalyzed water-oxidation pathway at atomic resolution.
Proc.Natl.Acad.Sci.USA, 110, 2004
1RUK
DownloadVisualize
BU of 1ruk by Molmil
Crystal structure (C) of native cationic cyclization antibody 4C6 fab at pH 4.6 with a data set collected at SSRL beamline 9-1
Descriptor: ACETATE ION, BENZOIC ACID, GLYCEROL, ...
Authors:Zhu, X, Wentworth Jr, P, Wentworth, A.D, Eschenmoser, A, Lerner, R.A, Wilson, I.A.
Deposit date:2003-12-11
Release date:2004-03-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Probing the antibody-catalyzed water-oxidation pathway at atomic resolution.
Proc.Natl.Acad.Sci.USA, 110, 2004
1RUL
DownloadVisualize
BU of 1rul by Molmil
Crystal Structure (D) of u.v.-irradiated cationic cyclization antibody 4C6 Fab at pH 5.6 with a data set collected at SSRL beamline 11-1.
Descriptor: ACETATE ION, BENZOIC ACID, GLYCEROL, ...
Authors:Zhu, X, Wentworth Jr, P, Wentworth, A.D, Eschenmoser, A, Lerner, R.A, Wilson, I.A.
Deposit date:2003-12-11
Release date:2004-03-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Probing the antibody-catalyzed water-oxidation pathway at atomic resolution.
Proc.Natl.Acad.Sci.USA, 110, 2004
1ND0
DownloadVisualize
BU of 1nd0 by Molmil
CATIONIC CYCLIZATION ANTIBODY 4C6 COMPLEX WITH TRANSITION STATE ANALOG
Descriptor: (1s,4s)-4-[dimethyl(phenyl)silyl]-1-methylpiperidine 1-oxide, IMMUNOGLOBULIN IGG2A, SULFATE ION
Authors:Zhu, X, Wilson, I.A.
Deposit date:2002-12-05
Release date:2003-05-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural Basis for Antibody Catalysis of a Cationic Cyclization Reaction
J.Mol.Biol., 329, 2003
2AJY
DownloadVisualize
BU of 2ajy by Molmil
Crystal Structure of Cocaine catalytic Antibody 7A1 Fab' in Complex with ecgonine methyl ester and benzoic acid
Descriptor: 3-HYDROXY-8-METHYL-8-AZA-BICYCLO[3.2.1]OCTANE-2-CARBOXYLIC ACID METHYL ESTER, Antibody 7A1 Fab', BENZOIC ACID, ...
Authors:Zhu, X, Wilson, I.A.
Deposit date:2005-08-02
Release date:2006-02-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Complete reaction cycle of a cocaine catalytic antibody at atomic resolution.
Structure, 14, 2006
2AK1
DownloadVisualize
BU of 2ak1 by Molmil
Crystal Structure of Cocaine catalytic Antibody 7A1 Fab' in Complex with benzoic acid
Descriptor: Antibody 7A1 Fab', BENZOIC ACID, ZINC ION
Authors:Zhu, X, Wilson, I.A.
Deposit date:2005-08-02
Release date:2006-02-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Complete reaction cycle of a cocaine catalytic antibody at atomic resolution.
Structure, 14, 2006
6EG3
DownloadVisualize
BU of 6eg3 by Molmil
Crystal structure of human BRM in complex with compound 15
Descriptor: 3-[(4-{[(2-chloropyridin-4-yl)carbamoyl]amino}pyridin-2-yl)ethynyl]benzoic acid, ETHANOL, Maltose/maltodextrin-binding periplasmic protein,Probable global transcription activator SNF2L2
Authors:Zhu, X, Kulathila, R, Hu, T, Xie, X.
Deposit date:2018-08-17
Release date:2018-10-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Discovery of Orally Active Inhibitors of Brahma Homolog (BRM)/SMARCA2 ATPase Activity for the Treatment of Brahma Related Gene 1 (BRG1)/SMARCA4-Mutant Cancers.
J. Med. Chem., 61, 2018
6EG2
DownloadVisualize
BU of 6eg2 by Molmil
Crystal structure of human BRM in complex with compound 16
Descriptor: ISOPROPYL ALCOHOL, Maltose/maltodextrin-binding periplasmic protein,Probable global transcription activator SNF2L2, N-(5-amino-2-chloropyridin-4-yl)-N'-(4-bromo-3-{[3-(hydroxymethyl)phenyl]ethynyl}-1,2-thiazol-5-yl)urea
Authors:Zhu, X, Kulathila, R, Hu, T, Xie, X.
Deposit date:2018-08-17
Release date:2018-10-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Discovery of Orally Active Inhibitors of Brahma Homolog (BRM)/SMARCA2 ATPase Activity for the Treatment of Brahma Related Gene 1 (BRG1)/SMARCA4-Mutant Cancers.
J. Med. Chem., 61, 2018
8TW1
DownloadVisualize
BU of 8tw1 by Molmil
Crystal structure of Lys2972, a phage endolysin targeting Streptococcus thermophilus
Descriptor: Endolysin Lys2972, GLYCEROL, SODIUM ION
Authors:Zhu, X, Moineau, S, Shi, R.
Deposit date:2023-08-18
Release date:2024-03-27
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Fermentation Practices Select for Thermostable Endolysins in Phages.
Mol.Biol.Evol., 41, 2024
8VKK
DownloadVisualize
BU of 8vkk by Molmil
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
Deposit date:2024-01-09
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:SARS-CoV-2 XBB.1.5 Spike Protein: Altered Receptor Binding, Antibody Evasion, and Retention of T Cell Recognition
To Be Published
8VKO
DownloadVisualize
BU of 8vko by Molmil
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with human ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
Deposit date:2024-01-09
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:SARS-CoV-2 XBB.1.5 Spike Protein: Altered Receptor Binding, Antibody Evasion, and Retention of T Cell Recognition
To Be Published
8VKM
DownloadVisualize
BU of 8vkm by Molmil
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
Deposit date:2024-01-09
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:SARS-CoV-2 XBB.1.5 Spike Protein: Altered Receptor Binding, Antibody Evasion, and Retention of T Cell Recognition
To Be Published
8VKL
DownloadVisualize
BU of 8vkl by Molmil
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 2)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Mannar, D, Saville, J, Poloni, C, Bezeruk, A, Tidey, K, Ahmed, S, Tuttle, K, Vahdatihassani, F, Cholak, S, Cook, L, Steiner, T.S, Subramaniam, S.
Deposit date:2024-01-09
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:SARS-CoV-2 XBB.1.5 Spike Protein: Altered Receptor Binding, Antibody Evasion, and Retention of T Cell Recognition
To Be Published
2FL5
DownloadVisualize
BU of 2fl5 by Molmil
Cofactor-containing antibodies: Crystal structure of the original yellow antibody
Descriptor: Immunoglobulin Igg1 Heavy chain, Immunoglobulin Igg1 Lambda Light Chain, RIBOFLAVIN
Authors:Zhu, X, Wilson, I.A.
Deposit date:2006-01-05
Release date:2006-02-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Cofactor-containing antibodies: Crystal structure of the original yellow antibody.
Proc.Natl.Acad.Sci.Usa, 103, 2006
8DI5
DownloadVisualize
BU of 8di5 by Molmil
Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with VH domain F6 (focused refinement of RBD and VH F6)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, VH F6
Authors:Zhu, X, Saville, J.W, Mannar, D, Berezuk, A.M, Subramaniam, S.
Deposit date:2022-06-28
Release date:2022-08-24
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Potent and broad neutralization of SARS-CoV-2 variants of concern (VOCs) including omicron sub-lineages BA.1 and BA.2 by biparatopic human VH domains.
Iscience, 25, 2022
6PZG
DownloadVisualize
BU of 6pzg by Molmil
Crystal structure of human NA-80 Fab
Descriptor: NA-80 Fab heavy chain, NA-80 Fab light chain
Authors:Zhu, X, Wilson, I.A.
Deposit date:2019-07-31
Release date:2019-12-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structural Basis of Protection against H7N9 Influenza Virus by Human Anti-N9 Neuraminidase Antibodies.
Cell Host Microbe, 26, 2019
6PZH
DownloadVisualize
BU of 6pzh by Molmil
Crystal structure of human NA-22 Fab
Descriptor: NA-22 Fab heavy chain, NA-22 Fab light chain
Authors:Zhu, X, Wilson, I.A.
Deposit date:2019-07-31
Release date:2019-12-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of Protection against H7N9 Influenza Virus by Human Anti-N9 Neuraminidase Antibodies.
Cell Host Microbe, 26, 2019
1LZL
DownloadVisualize
BU of 1lzl by Molmil
Bacterial Heroin Esterase
Descriptor: HEROIN ESTERASE
Authors:Zhu, X, Larsen, N.A, Basran, A, Bruce, N.C, Wilson, I.A.
Deposit date:2002-06-10
Release date:2003-01-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:OBSERVATION OF AN ARSENIC ADDUCT IN AN ACETYL ESTERASE CRYSTAL STRUCTURE
J.Biol.Chem., 278, 2003
1LZK
DownloadVisualize
BU of 1lzk by Molmil
BACTERIAL HEROIN ESTERASE COMPLEX WITH TRANSITION STATE ANALOG DIMETHYLARSENIC ACID
Descriptor: CACODYLATE ION, HEROIN ESTERASE
Authors:Zhu, X, Larsen, N.A, Basran, A, Bruce, N.C, Wilson, I.A.
Deposit date:2002-06-10
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:OBSERVATION OF AN ARSENIC ADDUCT IN AN ACETYL ESTERASE CRYSTAL STRUCTURE
J.Biol.Chem., 278, 2003
5CHY
DownloadVisualize
BU of 5chy by Molmil
STRUCTURE OF CHEMOTAXIS PROTEIN CHEY
Descriptor: CALCIUM ION, CHEY
Authors:Zhu, X, Rebello, J, Matsumura, P, Volz, K.
Deposit date:1996-08-29
Release date:1996-12-07
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of CheY mutants Y106W and T87I/Y106W. CheY activation correlates with movement of residue 106.
J.Biol.Chem., 272, 1997
1NCW
DownloadVisualize
BU of 1ncw by Molmil
Cationic Cyclization Antibody 4C6 in Complex with Benzoic Acid
Descriptor: BENZOIC ACID, GLYCEROL, IMMUNOGLOBULIN IGG2A
Authors:Zhu, X, Wilson, I.A.
Deposit date:2002-12-05
Release date:2003-05-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural Basis for Antibody Catalysis of a Cationic Cyclization Reaction
J.Mol.Biol., 329, 2003
2AJV
DownloadVisualize
BU of 2ajv by Molmil
Crystal Structure of Cocaine catalytic Antibody 7A1 Fab' in Complex with Cocaine
Descriptor: Antibody 7A1 Fab', COCAINE
Authors:Zhu, X, Wilson, I.A.
Deposit date:2005-08-02
Release date:2006-02-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Complete reaction cycle of a cocaine catalytic antibody at atomic resolution.
Structure, 14, 2006
2AJS
DownloadVisualize
BU of 2ajs by Molmil
Crystal structure of cocaine catalytic antibody 7A1 Fab' in complex with heptaethylene glycol
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, Antibody 7A1 FAB', GLYCEROL, ...
Authors:Zhu, X, Wilson, I.A.
Deposit date:2005-08-02
Release date:2006-02-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Complete reaction cycle of a cocaine catalytic antibody at atomic resolution.
Structure, 14, 2006
2AJZ
DownloadVisualize
BU of 2ajz by Molmil
Crystal Structure of Cocaine catalytic Antibody 7A1 Fab' in Complex with ecgonine methyl ester
Descriptor: 3-HYDROXY-8-METHYL-8-AZA-BICYCLO[3.2.1]OCTANE-2-CARBOXYLIC ACID METHYL ESTER, Antibody 7A1 Fab'
Authors:Zhu, X, Wilson, I.A.
Deposit date:2005-08-02
Release date:2006-02-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Complete reaction cycle of a cocaine catalytic antibody at atomic resolution.
Structure, 14, 2006

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon