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PDB: 319 件

3WGI
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BU of 3wgi by Molmil
Crystal structure of RSP in complex with beta-NAD+ and operator DNA
分子名称: DNA (5'-D(*TP*AP*GP*AP*TP*TP*GP*TP*TP*AP*AP*TP*CP*GP*AP*TP*TP*AP*AP*CP*AP*AP*TP*C)-3'), NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM), Redox-sensing transcriptional repressor rex
著者Zheng, Y, Ko, T.-P, Guo, R.-T.
登録日2013-08-05
公開日2014-08-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Distinct structural features of Rex-family repressors to sense redox levels in anaerobes and aerobes.
J.Struct.Biol., 188, 2014
3WG9
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BU of 3wg9 by Molmil
Crystal structure of RSP, a Rex-family repressor
分子名称: Redox-sensing transcriptional repressor rex, SULFATE ION
著者Zheng, Y, Ko, T.-P, Guo, R.-T.
登録日2013-08-03
公開日2014-08-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Distinct structural features of Rex-family repressors to sense redox levels in anaerobes and aerobes.
J.Struct.Biol., 188, 2014
4YIA
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BU of 4yia by Molmil
Structural mechanism of hormone release in thyroxine binding globulin
分子名称: CALCIUM ION, CHLORIDE ION, INDOMETHACIN, ...
著者Zheng, Y.
登録日2015-03-01
公開日2016-03-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural mechanism of hormone release in thyroxine Binding globulin
To Be Published
7ULX
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BU of 7ulx by Molmil
Human DDAH1 soaked with its inhibitor N4-(4-chloropyridin-2-yl)-L-asparagine
分子名称: N(G),N(G)-dimethylarginine dimethylaminohydrolase 1, N-(pyridin-2-yl)-L-asparagine
著者Zheng, Y, Butrin, A, Tuley, A, Liu, D, Fast, W.
登録日2022-04-05
公開日2023-08-30
実験手法X-RAY DIFFRACTION (1.707 Å)
主引用文献Optimization of a switchable electrophile fragment into a potent and selective covalent inhibitor of human DDAH1
To Be Published
7ULV
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BU of 7ulv by Molmil
Human DDAH1 soaked with its inactivator S-((4-chloropyridin-2-yl)methyl)-L-cysteine
分子名称: N(G),N(G)-dimethylarginine dimethylaminohydrolase 1, S-[(pyridin-2-yl)methyl]-L-cysteine
著者Zheng, Y, Butrin, A, Tuley, A, Liu, D, Fast, W.
登録日2022-04-05
公開日2023-08-30
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Optimization of a switchable electrophile fragment into a potent and selective covalent inhibitor of human DDAH1
To Be Published
7BWP
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BU of 7bwp by Molmil
Crystal complex of endo-deglycosylated PcHNL5 with (R)-mandelonitrile
分子名称: (2R)-hydroxy(phenyl)ethanenitrile, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
著者Zheng, Y.C, Li, F.L, Yu, H.L, Xu, J.H.
登録日2020-04-15
公開日2020-05-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Structure-Guided Tuning of a Hydroxynitrile Lyase to Accept Rigid Pharmaco Aldehydes.
Acs Catalysis, 2020
6JBY
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BU of 6jby by Molmil
Crystal structure of endo-deglycosylated hydroxynitrile lyase isozyme 5 of Prunus communis
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Zheng, Y.C, Li, F.L, Yu, H.L, Xu, J.H.
登録日2019-01-27
公開日2020-04-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure-Guided Tuning of a Hydroxynitrile Lyase to Accept Rigid Pharmaco Aldehydes.
Acs Catalysis, 2020
6LQY
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BU of 6lqy by Molmil
Crystal complex of endo-deglycosylated hydroxynitrile lyase isozyme 5 of Prunus communis with benzaldehyde
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, PREDICTED: (R)-mandelonitrile lyase, ...
著者Zheng, Y.C, Li, F.L, Yu, H.L, Xu, J.H.
登録日2020-01-15
公開日2020-05-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.598 Å)
主引用文献Structure-Guided Tuning of a Hydroxynitrile Lyase to Accept Rigid Pharmaco Aldehydes.
Acs Catalysis, 2020
7TWM
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BU of 7twm by Molmil
Structure of a borosin methyltransferase from Mycena rosella with peptide CspL(MroMCspL) in complex with SAH
分子名称: MroMCspL, S-ADENOSYL-L-HOMOCYSTEINE
著者Zheng, Y, Ongpipattanakul, C, Nair, S.K.
登録日2022-02-07
公開日2022-11-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Bioconjugate Platform for Iterative Backbone N -Methylation of Peptides.
Acs Catalysis, 12, 2022
7TWL
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BU of 7twl by Molmil
Structure of a borosin methyltransferase from Mycena rosella with peptide A2 (MroMA2) in complex with SAH
分子名称: MroMA2, S-ADENOSYL-L-HOMOCYSTEINE
著者Zheng, Y, Ongpipattanakul, C, Nair, S.K.
登録日2022-02-07
公開日2022-11-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Bioconjugate Platform for Iterative Backbone N -Methylation of Peptides.
Acs Catalysis, 12, 2022
7TWK
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BU of 7twk by Molmil
Structure of a borosin methyltransferase from Mycena rosella with native peptide (MroMA1) in complex with SAH
分子名称: GLYCEROL, MroMA1, S-ADENOSYL-L-HOMOCYSTEINE
著者Zheng, Y, Ongpipattanakul, C, Nair, S.K.
登録日2022-02-07
公開日2022-11-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Bioconjugate Platform for Iterative Backbone N -Methylation of Peptides.
Acs Catalysis, 12, 2022
7U58
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BU of 7u58 by Molmil
YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis
分子名称: MAGNESIUM ION, MusD, ZINC ION
著者Zheng, Y, Nair, S.K.
登録日2022-03-01
公開日2022-11-02
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis.
Nat.Chem.Biol., 19, 2023
4UC1
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BU of 4uc1 by Molmil
High resolution crystal structure of translocator protein 18kDa (TSPO) from Rhodobacter sphaeroides (A139T Mutant) in C2 space group
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-1-(hexadecanoyloxy)-3-hydroxypropan-2-yl (11Z)-octadec-11-enoate, METHOXY-ETHOXYL, ...
著者Li, F, Liu, J, Zheng, Y, Garavito, R.M, Ferguson-Miller, S.
登録日2014-08-13
公開日2015-02-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of translocator protein (TSPO) and mutant mimic of a human polymorphism.
Science, 347, 2015
7OUO
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BU of 7ouo by Molmil
Crystal structure of RNA duplex [UCGUGCGA]2 in complex with Ba2+ cation
分子名称: BARIUM ION, RNA (5'-R(*UP*CP*GP*UP*GP*CP*GP*A)-3')
著者Ruszkowski, M, Mao, S, Zheng, Y.Y, Ruszkowska, A, Sheng, J.
登録日2021-06-12
公開日2022-03-30
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.212 Å)
主引用文献Structural Insights Into the 5'UG/3'GU Wobble Tandem in Complex With Ba 2+ Cation.
Front Mol Biosci, 8, 2021
4RWS
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BU of 4rws by Molmil
Crystal structure of CXCR4 and viral chemokine antagonist vMIP-II complex (PSI Community Target)
分子名称: C-X-C chemokine receptor type 4/Endolysin chimeric protein, Viral macrophage inflammatory protein 2
著者Qin, L, Kufareva, I, Holden, L, Wang, C, Zheng, Y, Wu, H, Fenalti, G, Han, G.W, Cherezov, V, Abagyan, R, Stevens, R.C, Handel, T.M, GPCR Network (GPCR)
登録日2014-12-05
公開日2015-02-11
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural biology. Crystal structure of the chemokine receptor CXCR4 in complex with a viral chemokine.
Science, 347, 2015
4UC3
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BU of 4uc3 by Molmil
Translocator protein 18 kDa (TSPO) from Rhodobacter sphaeroides wild type
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2-(hexadecanoyloxy)-3-hydroxypropyl (9Z)-octadec-9-enoate, TRANSLOCATOR PROTEIN TSPO
著者Li, F, Liu, J, Zheng, Y, Garavito, R.M, Ferguson-Miller, S.
登録日2014-08-13
公開日2015-02-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structures of translocator protein (TSPO) and mutant mimic of a human polymorphism.
Science, 347, 2015
4UC2
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BU of 4uc2 by Molmil
Crystal structure of translocator protein 18kDa (TSPO) from rhodobacter sphaeroides (A139T mutant) in P212121 space group
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, TETRAETHYLENE GLYCOL, TRANSLOCATOR PROTEIN TSPO
著者Li, F, Liu, J, Zheng, Y, Garavito, R.M, Ferguson-Miller, S.
登録日2014-08-13
公開日2015-02-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of translocator protein (TSPO) and mutant mimic of a human polymorphism.
Science, 347, 2015
1F7C
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BU of 1f7c by Molmil
CRYSTAL STRUCTURE OF THE BH DOMAIN FROM GRAF, THE GTPASE REGULATOR ASSOCIATED WITH FOCAL ADHESION KINASE
分子名称: RHOGAP PROTEIN
著者Longenecker, K.L, Derewenda, U, Sheffield, P.J, Zheng, Y, Derewenda, Z.S.
登録日2000-06-26
公開日2000-12-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the BH domain from graf and its implications for Rho GTPase recognition.
J.Biol.Chem., 275, 2000
5MKV
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BU of 5mkv by Molmil
Crystal Structure of Human Dihydropyrimidinease-like 2 (DPYSL2A)/Collapsin Response Mediator Protein (CRMP2) residues 13-516
分子名称: 1,2-ETHANEDIOL, Dihydropyrimidinase-related protein 2
著者Sethi, R, Zheng, Y, Krojer, T, Velupillai, S, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Ahmed, A.A, von Delft, F.
登録日2016-12-05
公開日2017-02-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Tuning microtubule dynamics to enhance cancer therapy by modulating FER-mediated CRMP2 phosphorylation.
Nat Commun, 9, 2018
3AXE
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BU of 3axe by Molmil
The truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase V18Y/W203Y in complex with cellotetraose (cellobiose density was observed)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-glucanase, CALCIUM ION, ...
著者Huang, J.W, Cheng, Y.S, Ko, T.P, Lin, C.Y, Lai, H.L, Chen, C.C, Ma, Y, Huang, C.H, Zheng, Y, Liu, J.R, Guo, R.T.
登録日2011-04-04
公開日2012-02-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Rational design to improve thermostability and specific activity of the truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase
Appl.Microbiol.Biotechnol., 94, 2012
3AXD
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BU of 3axd by Molmil
The truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase V18Y/W203Y in apo-form
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-glucanase, CALCIUM ION
著者Huang, J.W, Cheng, Y.S, Ko, T.P, Lin, C.Y, Lai, H.L, Chen, C.C, Ma, Y, Huang, C.H, Zheng, Y, Liu, J.R, Guo, R.T.
登録日2011-04-03
公開日2012-02-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Rational design to improve thermostability and specific activity of the truncated Fibrobacter succinogenes 1,3-1,4-beta-D-glucanase
Appl.Microbiol.Biotechnol., 94, 2012
4XLY
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BU of 4xly by Molmil
The complex structure of KS-D75C with substrate CPP
分子名称: (2E)-3-methyl-5-[(1R,4aR,8aR)-5,5,8a-trimethyl-2-methylidenedecahydronaphthalen-1-yl]pent-2-en-1-yl trihydrogen diphosphate, Uncharacterized protein blr2150
著者Hu, Y, Zheng, Y, Ko, T.P, Liu, W, Guo, R.T.
登録日2015-01-14
公開日2015-02-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Structure, function and inhibition of ent-kaurene synthase from Bradyrhizobium japonicum.
Sci Rep, 4, 2014
5MLE
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BU of 5mle by Molmil
Crystal Structure of Human Dihydropyrimidinease-like 2 (DPYSL2A)/Collapsin Response Mediator Protein (CRMP2 13-516) Mutant Y479E/Y499E
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Dihydropyrimidinase-related protein 2, ...
著者Sethi, R, Zheng, Y, Talon, R, Velupillai, S, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Ahmed, A.A, von Delft, F.
登録日2016-12-06
公開日2017-02-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Tuning microtubule dynamics to enhance cancer therapy by modulating FER-mediated CRMP2 phosphorylation.
Nat Commun, 9, 2018
4W4R
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BU of 4w4r by Molmil
Crystal structure of ent-kaurene synthase BJKS from bradyrhizobium japonicum
分子名称: Uncharacterized protein blr2150
著者Liu, W, Zheng, Y, Huang, C.H, Ko, T.P, Guo, R.T.
登録日2014-08-15
公開日2015-01-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Structure, function and inhibition of ent-kaurene synthase from Bradyrhizobium japonicum.
Sci Rep, 4, 2014
4W4S
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BU of 4w4s by Molmil
Crystal structure of ent-kaurene synthase BJKS from bradyrhizobium japonicum in complex with BPH-629
分子名称: Uncharacterized protein blr2150, [2-(3-DIBENZOFURAN-4-YL-PHENYL)-1-HYDROXY-1-PHOSPHONO-ETHYL]-PHOSPHONIC ACID
著者Liu, W, Zheng, Y, Huang, C.H, Guo, R.T.
登録日2014-08-15
公開日2015-01-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure, function and inhibition of ent-kaurene synthase from Bradyrhizobium japonicum.
Sci Rep, 4, 2014

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