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PDB: 1273 results

6KQD
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Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 3 nt
Descriptor: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3'), ...
Authors:Zhang, Y, Li, L, Ebright, R.H.
Deposit date:2019-08-17
Release date:2020-03-11
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.
Proc.Natl.Acad.Sci.USA, 117, 2020
6KQE
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BU of 6kqe by Molmil
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 4 nt
Descriptor: DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3'), DNA-directed RNA polymerase subunit alpha, ...
Authors:Zhang, Y, Li, L, Ebright, R.H.
Deposit date:2019-08-17
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.
Proc.Natl.Acad.Sci.USA, 117, 2020
6KQM
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BU of 6kqm by Molmil
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 5 nt
Descriptor: DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3'), DNA-directed RNA polymerase subunit alpha, ...
Authors:Zhang, Y, Li, L, Ebright, R.H.
Deposit date:2019-08-18
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.197 Å)
Cite:RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.
Proc.Natl.Acad.Sci.USA, 117, 2020
6KQG
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BU of 6kqg by Molmil
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 6 nt
Descriptor: DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3'), DNA-directed RNA polymerase subunit alpha, ...
Authors:Zhang, Y, Li, L, Ebright, R.H.
Deposit date:2019-08-17
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.783 Å)
Cite:RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.
Proc.Natl.Acad.Sci.USA, 117, 2020
6KQH
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BU of 6kqh by Molmil
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 7 nt
Descriptor: DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3'), DNA-directed RNA polymerase subunit alpha, ...
Authors:Zhang, Y, Li, L, Ebright, R.H.
Deposit date:2019-08-17
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.
Proc.Natl.Acad.Sci.USA, 117, 2020
6KQL
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BU of 6kql by Molmil
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 4 nt
Descriptor: DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*G*)-3'), DNA-directed RNA polymerase subunit alpha, ...
Authors:Zhang, Y, Li, L, Ebright, R.H.
Deposit date:2019-08-18
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.
Proc.Natl.Acad.Sci.USA, 117, 2020
6KQN
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BU of 6kqn by Molmil
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 6 nt
Descriptor: DNA (5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3'), DNA-directed RNA polymerase subunit alpha, ...
Authors:Zhang, Y, Li, L, Ebright, R.H.
Deposit date:2019-08-18
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.489 Å)
Cite:RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.
Proc.Natl.Acad.Sci.USA, 117, 2020
6L2G
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BU of 6l2g by Molmil
Crystal structure of Aspergillus fumigatus mitochondrial acetyl-CoA acetyltransferase
Descriptor: Acetyl-CoA-acetyltransferase, putative
Authors:Zhang, Y, Wei, W, Raimi, O.G, Ferenbach, A.T, Fang, W.
Deposit date:2019-10-03
Release date:2020-02-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Aspergillus fumigatus Mitochondrial Acetyl Coenzyme A Acetyltransferase as an Antifungal Target.
Appl.Environ.Microbiol., 86, 2020
6I5X
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BU of 6i5x by Molmil
Crystal structure of Aspergillus fumigatus phosphomannomutase
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
Authors:Zhang, Y, Raimi, O.G, Ferenbach, A.T, van Aalten, D.M.F.
Deposit date:2018-11-15
Release date:2019-11-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Aspergillus fumigatus phosphomannomutase
To Be Published
6L2C
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BU of 6l2c by Molmil
Crystal structure of Aspergillus fumigatus mitochondrial acetyl-CoA acetyltransferase in complex with CoA
Descriptor: Acetyl-CoA-acetyltransferase, putative, COENZYME A
Authors:Zhang, Y, Wei, W, Raimi, O.G, Ferenbach, A.T, Fang, W.
Deposit date:2019-10-03
Release date:2020-02-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Aspergillus fumigatus Mitochondrial Acetyl Coenzyme A Acetyltransferase as an Antifungal Target.
Appl.Environ.Microbiol., 86, 2020
6KQF
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BU of 6kqf by Molmil
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 5 nt
Descriptor: DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3'), DNA-directed RNA polymerase subunit alpha, ...
Authors:Zhang, Y, Li, L, Ebright, R.H.
Deposit date:2019-08-17
Release date:2020-03-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.
Proc.Natl.Acad.Sci.USA, 117, 2020
7F3L
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BU of 7f3l by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
Descriptor: RNA (5'-R(P*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
To Be Published
7F3J
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BU of 7f3j by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
Descriptor: RNA (5'-R(*UP*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
To Be Published
7F3I
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BU of 7f3i by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
Descriptor: RNA (5'-R(*GP*UP*(5MC)P*CP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
To Be Published
7F3K
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BU of 7f3k by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
Descriptor: RNA (5'-R(*UP*CP*AP*UP*(5MC)P*U)-3'), SULFATE ION, Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
To Be Published
7W7V
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BU of 7w7v by Molmil
'late' E2P of SERCA2b
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
Authors:Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
Deposit date:2021-12-06
Release date:2022-12-14
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7U
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BU of 7w7u by Molmil
The 'Ca2+-unbound' BeF3- of SERCA2b
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
Authors:Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
Deposit date:2021-12-06
Release date:2022-12-14
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7W
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BU of 7w7w by Molmil
E2 Pi of SERCA2b
Descriptor: MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2, TETRAFLUOROALUMINATE ION
Authors:Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
Deposit date:2021-12-06
Release date:2022-12-14
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7W7T
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BU of 7w7t by Molmil
The E1-BeF3- 2Ca2+ of SERCA2b
Descriptor: BERYLLIUM TRIFLUORIDE ION, CALCIUM ION, MAGNESIUM ION, ...
Authors:Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
Deposit date:2021-12-06
Release date:2022-12-14
Last modified:2023-01-11
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Multiple sub-state structures of SERCA2b reveal conformational overlap at transition steps during the catalytic cycle.
Cell Rep, 41, 2022
7E7S
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BU of 7e7s by Molmil
WT transporter state1
Descriptor: CALCIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
Authors:Zhang, Y, Watanabe, S, Tsutsumi, A, Inaba, K.
Deposit date:2021-02-27
Release date:2021-09-08
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM analysis provides new mechanistic insight into ATP binding to Ca 2+ -ATPase SERCA2b.
Embo J., 40, 2021
7WHM
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BU of 7whm by Molmil
Closed spike of Bombyx mori cytoplasmic polyhedrosis virus
Descriptor: PPPDE domain-containing protein
Authors:Zhang, Y, Cui, Y, Sun, J, Zhou, Z.H.
Deposit date:2021-12-31
Release date:2022-02-02
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Multiple conformations of trimeric spikes visualized on a non-enveloped virus.
Nat Commun, 13, 2022
7WHN
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BU of 7whn by Molmil
Opened spike of Bombyx mori cytoplasmic polyhedrosis virus
Descriptor: PPPDE domain-containing protein
Authors:Zhang, Y, Cui, Y, Sun, J, Zhou, Z.H.
Deposit date:2021-12-31
Release date:2022-02-02
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Multiple conformations of trimeric spikes visualized on a non-enveloped virus.
Nat Commun, 13, 2022
7WHP
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BU of 7whp by Molmil
Pentameric turret of Bombyx mori cytoplasmic polyhedrosis virus after spike detaches.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, S-ADENOSYLMETHIONINE, Structural protein VP3
Authors:Zhang, Y, Cui, Y, Sun, J, Zhou, Z.H.
Deposit date:2021-12-31
Release date:2022-02-02
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Multiple conformations of trimeric spikes visualized on a non-enveloped virus.
Nat Commun, 13, 2022
7WF9
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BU of 7wf9 by Molmil
Crystal structure of mouse SNX25 RGS domain in space group P41212
Descriptor: Sorting nexin-25
Authors:Zhang, Y, Xu, J, Liu, J.
Deposit date:2021-12-26
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural Studies Reveal Unique Non-canonical Regulators of G Protein Signaling Homology (RH) Domains in Sorting Nexins.
J.Mol.Biol., 434, 2022
7WF8
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BU of 7wf8 by Molmil
Crystal structure of mouse SNX25 RGS domain in space group P212121
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Zhang, Y, Xu, J, Liu, J.
Deposit date:2021-12-26
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Studies Reveal Unique Non-canonical Regulators of G Protein Signaling Homology (RH) Domains in Sorting Nexins.
J.Mol.Biol., 434, 2022

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PDB entries from 2024-07-17

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