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PDB: 395 results

6US5
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BU of 6us5 by Molmil
DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template, 3'-amino primer, dGpNHpp analog, and Mn2+
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*CP*AP*CP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*(C42))-3'), ...
Authors:Zhang, W, Lelyveld, V.S, Szostak, J.W.
Deposit date:2019-10-24
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Synthesis of phosphoramidate-linked DNA by a modified DNA polymerase.
Proc.Natl.Acad.Sci.USA, 117, 2020
1U7R
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BU of 1u7r by Molmil
Crystal structure of Native Sperm Whale myoglobin from low ionic strength enviroment (Form2 )
Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Zhang, W, Phillips Jr, G.N.
Deposit date:2004-08-04
Release date:2005-07-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments.
Proteins, 70, 2008
6UR2
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BU of 6ur2 by Molmil
DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template and primer containing an N3'-> P5' linkage
Descriptor: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*(C42)P*G)-3'), DNA (5'-D(P*AP*CP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA polymerase I
Authors:Zhang, W, Lelyveld, V.S, Szostak, J.W.
Deposit date:2019-10-21
Release date:2020-03-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Synthesis of phosphoramidate-linked DNA by a modified DNA polymerase.
Proc.Natl.Acad.Sci.USA, 117, 2020
1UUA
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BU of 1uua by Molmil
Solution structure of a truncated bovine pancreatic trypsin inhibitor, 3-58 BPTI.
Descriptor: BOVINE PANCREATIC TRYPSIN INHIBITOR
Authors:Zhang, W, Nielsen, C.B, Hansen, P.E.
Deposit date:2003-12-17
Release date:2004-01-29
Last modified:2018-01-17
Method:SOLUTION NMR
Cite:NMR Solution Structures of Modifies and Truncated Bovine Pancreatic Trypsin Inhibitor Proteins (3-58 Bpti'S)
To be Published
1UUB
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BU of 1uub by Molmil
Solution structure of a truncated bovine pancreatic trypsin inhibitor mutant, 3-58 BPTI (K15R, R17A, R42S)
Descriptor: BOVINE PANCREATIC TRYPSIN INHIBITOR
Authors:Zhang, W, Nielsen, C.B, Hansen, P.E.
Deposit date:2003-12-17
Release date:2004-01-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Solution Structures of Modified and Truncated Bovine Pancreatic Trypsin Inhibitor Proteins (3-58 Bpti'S)
To be Published
5DHB
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BU of 5dhb by Molmil
Cooperativity and Downstream Binding in RNA Replication
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, RNA (5'-R(*(LCC)P*(TLN)P*(LCG)P*UP*AP*CP*A)-3')
Authors:Zhang, W, Fahrenbach, A.C, Tam, C.P, Szostak, J.W.
Deposit date:2015-08-30
Release date:2016-12-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016
5DHC
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BU of 5dhc by Molmil
Cooperativity and Downstream Binding in RNA Replication
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3')
Authors:Zhang, W, Fahrenbach, A.C, Tam, C.P, Szostak, J.W.
Deposit date:2015-08-30
Release date:2016-12-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016
4DJG
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BU of 4djg by Molmil
Crystal structure of the coiled-coil 1 domain of actin-binding protein SCAB1
Descriptor: Plectin-related protein
Authors:Zhang, W, Ye, K.
Deposit date:2012-02-01
Release date:2012-02-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Plant actin-binding protein SCAB1 is dimeric actin cross-linker with atypical pleckstrin homology domain
J.Biol.Chem., 287, 2012
4ACS
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BU of 4acs by Molmil
Crystal structure of mutant GST A2-2 with enhanced catalytic efficiency with azathioprine
Descriptor: GLUTATHIONE, GLUTATHIONE S-TRANSFERASE A2
Authors:Zhang, W, Moden, O, Tars, K, Mannervik, B.
Deposit date:2011-12-19
Release date:2011-12-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based redesign of GST A2-2 for enhanced catalytic efficiency with azathioprine.
Chem.Biol., 19, 2012
4DIX
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BU of 4dix by Molmil
Crystal structure of the Ig-PH domain of actin-binding protein SCAB1
Descriptor: MALONATE ION, Plectin-related protein
Authors:Zhang, W, Ye, K.
Deposit date:2012-02-01
Release date:2012-02-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Plant actin-binding protein SCAB1 is dimeric actin cross-linker with atypical pleckstrin homology domain
J.Biol.Chem., 287, 2012
5ZHY
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BU of 5zhy by Molmil
Structural characterization of the HCoV-229E fusion core
Descriptor: Spike glycoprotein
Authors:Zhang, W, Zheng, Q, Yan, M, Chen, X, Yang, H, Zhou, W, Rao, Z.
Deposit date:2018-03-13
Release date:2018-06-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.441 Å)
Cite:Structural characterization of the HCoV-229E fusion core.
Biochem. Biophys. Res. Commun., 497, 2018
5ZHZ
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BU of 5zhz by Molmil
Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium tuberculosis
Descriptor: Probable endonuclease 4, SULFATE ION, ZINC ION
Authors:Zhang, W, Xu, Y, Yan, M, Li, S, Wang, H, Yang, H, Zhou, W, Rao, Z.
Deposit date:2018-03-13
Release date:2018-04-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium tuberculosis.
Biochem. Biophys. Res. Commun., 498, 2018
8SPI
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BU of 8spi by Molmil
Crystal structure of chimeric omicron RBD (strain XBB.1.5) complexed with human ACE2
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhang, W, Shi, K, Aihara, H, Li, F.
Deposit date:2023-05-03
Release date:2023-08-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structural evolution of SARS-CoV-2 omicron in human receptor recognition.
J.Virol., 97, 2023
8SPH
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BU of 8sph by Molmil
Crystal structure of chimeric omicron RBD (strain XBB.1) complexed with human ACE2
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhang, W, Shi, K, Aihara, H, Li, F.
Deposit date:2023-05-03
Release date:2023-08-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structural evolution of SARS-CoV-2 omicron in human receptor recognition.
J.Virol., 97, 2023
2L32
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BU of 2l32 by Molmil
solution structure of ubiquitin-like small archaeal modifier protein in Haloferax volcanii
Descriptor: Small archaeal modifier protein 2
Authors:Zhang, W, Fan, K, Liao, S, Tu, X.
Deposit date:2010-09-01
Release date:2011-10-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:solution structure of ubiquitin-like small archaeal modifier protein in Haloferax volcanii
To be Published
3HCK
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BU of 3hck by Molmil
NMR ensemble of the uncomplexed human HCK SH2 domain, 20 structures
Descriptor: HCK SH2
Authors:Zhang, W, Smithgall, T.E, Gmeiner, W.H.
Deposit date:1997-03-31
Release date:1997-10-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Sequential assignment and secondary structure determination for the Src homology 2 domain of hematopoietic cellular kinase.
FEBS Lett., 406, 1997
3J0B
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BU of 3j0b by Molmil
cryo-EM reconstruction of West Nile virus
Descriptor: envelope glycoprotein E
Authors:Zhang, W, Kaufmann, B, Chipman, P.R, Kuhn, R.J, Rossmann, M.G.
Deposit date:2011-06-15
Release date:2012-12-19
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (10.3 Å)
Cite:Membrane curvature in flaviviruses.
J.Struct.Biol., 183, 2013
8F5C
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BU of 8f5c by Molmil
Mirror-image DNA containing 2'-OMe-L-dC modification
Descriptor: DNA (5'-D(*(0DG))-R(P*(XE6))-D(P*(0DG)P*(0DT)P*(0DA)P*(0DC)P*(0DG)P*(0DC))-3'), MAGNESIUM ION
Authors:Zhang, W, Dantsu, Y.
Deposit date:2022-11-13
Release date:2023-09-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Synthesis and Structural Characterization of 2'-Deoxy-2'-Methoxy-L-Cytidine Nucleic Acids
Chemistryselect, 2023
2LJI
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BU of 2lji by Molmil
Structure of a protein from Haloferax volcanii
Descriptor: Small archaeal modifier protein 2
Authors:Zhang, W, Liao, S, Fan, K.
Deposit date:2011-09-14
Release date:2012-10-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of a protein from Haloferax volcanii
To be Published
2MHA
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BU of 2mha by Molmil
CRYSTAL STRUCTURE OF THE MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I H-2KB MOLECULE CONTAINING A SINGLE VIRAL PEPTIDE: IMPLICATIONS FOR PEPTIDE BINDING AND T-CELL RECEPTOR RECOGNITION
Descriptor: BETA 2-MICROGLOBULIN, CLASS I HISTOCOMPATIBILITY ANTIGEN (H-2KB) (ALPHA CHAIN), VIRAL OCTAPEPTIDE ARG-GLY-TYR-VAL-TYR-GLN-GLY-LEU
Authors:Zhang, W, Young, A.C.M, Imarai, M, Nathenson, S.G, Sacchettini, J.C.
Deposit date:1993-07-21
Release date:1993-10-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the major histocompatibility complex class I H-2Kb molecule containing a single viral peptide: implications for peptide binding and T-cell receptor recognition.
Proc.Natl.Acad.Sci.USA, 89, 1992
5HBY
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BU of 5hby by Molmil
RNA primer-template complex with 2-methylimidazole-activated monomer analogue-3 binding sites
Descriptor: MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid
Authors:Zhang, W, Tam, C.P, Wang, J, Szostak, J.W.
Deposit date:2016-01-03
Release date:2016-12-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016
4H5A
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BU of 4h5a by Molmil
DNA octamer D (GTseGTACAC) partially crosslinked with platinum
Descriptor: DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3'), PLATINUM (II) ION
Authors:Zhang, W, Coronado, G, Huang, Z.
Deposit date:2012-09-18
Release date:2012-10-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:DNA octamer D (GTseGTACAC) partially crosslinked with platinum
To be Published
4I1G
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BU of 4i1g by Molmil
dna octamer d(GTseGTACAC) partially crosslinked with two platinums
Descriptor: DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3'), PLATINUM (II) ION
Authors:Zhang, W, Coronado, G, Huang, Z.
Deposit date:2012-11-20
Release date:2012-12-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:dna octamer d(GTseGTACAC) partially crosslinked with two platinums
TO BE PUBLISHED
5HBW
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BU of 5hbw by Molmil
RNA primer-template complex with 2-methylimidazole-activated monomer analogue
Descriptor: RNA (5'-R(*(LCC)P*(TLN)P*(LCG)P*UP*AP*CP*A)-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid
Authors:Zhang, W, Tam, C.P, Szostak, J.W.
Deposit date:2016-01-03
Release date:2016-12-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016
5HBX
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BU of 5hbx by Molmil
RNA primer-template complex with 2-methylimidazole-activated monomer analogue-2 binding sites
Descriptor: RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid
Authors:Zhang, W, Tam, C.P, Szostak, J.W.
Deposit date:2016-01-03
Release date:2016-12-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016

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