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PDB: 1659 件

1T8W
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Crystal Structure of E. coli AMP Nucleosidase
分子名称: AMP nucleosidase
著者Zhang, Y, Cottet, S.E, Ealick, S.E.
登録日2004-05-13
公開日2004-08-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of Escherichia coli AMP Nucleosidase Reveals Similarity to Nucleoside Phosphorylases
STRUCTURE, 12, 2004
1T8S
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Crystal Structure of E.coli AMP Nucleosidase complexed with formicin 5'-monophosphate
分子名称: AMP nucleosidase, FORMYCIN-5'-MONOPHOSPHATE
著者Zhang, Y, Cottet, S.E, Ealick, S.E.
登録日2004-05-13
公開日2004-08-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of Escherichia coli AMP Nucleosidase Reveals Similarity to Nucleoside Phosphorylases
STRUCTURE, 12, 2004
1T8Y
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Crystal Structure of E.coli AMP Nucleosidase complexed with phosphate
分子名称: AMP nucleosidase, PHOSPHATE ION
著者Zhang, Y, Cottet, S.E, Ealick, S.E.
登録日2004-05-13
公開日2004-08-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of Escherichia coli AMP Nucleosidase Reveals Similarity to Nucleoside Phosphorylases
STRUCTURE, 12, 2004
1T8R
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Crystal Structure of E. coli AMP Nucleosidase
分子名称: AMP nucleosidase
著者Zhang, Y, Cottet, S.E, Ealick, S.E.
登録日2004-05-13
公開日2004-08-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of Escherichia coli AMP Nucleosidase Reveals Similarity to Nucleoside Phosphorylases
STRUCTURE, 12, 2004
9ATN
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NMR structure of the MLL4 PHD2/3 fingers in complex with ASXL2
分子名称: Histone-lysine N-methyltransferase 2D, Polycomb group protein ASXL2, ZINC ION
著者Zhang, Y, Zandian, M, Kutateladze, T.
登録日2024-02-27
公開日2024-06-19
実験手法SOLUTION NMR
主引用文献ASXLs binding to the PHD2/3 fingers of MLL4 provides a mechanism for the recruitment of BAP1 to active enhancers.
Nat Commun, 15, 2024
8ISJ
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Pr conformer of Arabidopsis thaliana phytochrome A - AtphyA-Pr
分子名称: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Phytochrome A
著者Zhang, Y, Ma, C, Zhao, J, Gao, N, Wang, J.
登録日2023-03-20
公開日2023-08-09
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural insights into plant phytochrome A as a highly sensitized photoreceptor.
Cell Res., 33, 2023
8ISK
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Pr conformer of Zea mays phytochrome A1 - ZmphyA1-Pr
分子名称: 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, Phytochrome
著者Zhang, Y, Ma, C, Zhao, J, Gao, N, Wang, J.
登録日2023-03-20
公開日2023-08-09
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural insights into plant phytochrome A as a highly sensitized photoreceptor.
Cell Res., 33, 2023
8ISI
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Photochromobilin-free form of Arabidopsis thaliana phytochrome A - apo-AtphyA
分子名称: Phytochrome A
著者Zhang, Y, Ma, C, Zhao, J, Gao, N, Wang, J.
登録日2023-03-20
公開日2023-08-09
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.77 Å)
主引用文献Structural insights into plant phytochrome A as a highly sensitized photoreceptor.
Cell Res., 33, 2023
4S00
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Crystal structure of metallopeptidase-like dimethylsulphoniopropionate (DMSP) lyase RlDddP mutant Y366A in complex with acrylate
分子名称: ACRYLIC ACID, FE (III) ION, GLYCEROL, ...
著者Zhang, Y, Wang, P.
登録日2014-12-27
公開日2015-08-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Structural and molecular basis for the novel catalytic mechanism and evolution of DddP, an abundant peptidase-like bacterial Dimethylsulfoniopropionate lyase: a new enzyme from an old fold.
Mol.Microbiol., 98, 2015
4RZZ
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Crystal structure of metallopeptidase-like dimethylsulphoniopropionate (DMSP) lyase RlDddP in complex with phosphate
分子名称: FE (III) ION, GLYCEROL, PHOSPHATE ION, ...
著者Zhang, Y, Wang, P.
登録日2014-12-27
公開日2015-08-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and molecular basis for the novel catalytic mechanism and evolution of DddP, an abundant peptidase-like bacterial Dimethylsulfoniopropionate lyase: a new enzyme from an old fold.
Mol.Microbiol., 98, 2015
4RZY
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Crystal structure of metallopeptidase-like dimethylsulphoniopropionate (DMSP) lyase RlDddP in complex with MES
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FE (III) ION, Peptidase M24
著者Zhang, Y, Wang, P.
登録日2014-12-26
公開日2015-08-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.949 Å)
主引用文献Structural and molecular basis for the novel catalytic mechanism and evolution of DddP, an abundant peptidase-like bacterial Dimethylsulfoniopropionate lyase: a new enzyme from an old fold.
Mol.Microbiol., 98, 2015
4S01
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Crystal structure of metallopeptidase-like dimethylsulphoniopropionate (DMSP) lyase RlDddP mutant D377N in complex with acrylate
分子名称: ACRYLIC ACID, FE (III) ION, GLYCEROL, ...
著者Zhang, Y, Wang, P.
登録日2014-12-27
公開日2015-08-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and molecular basis for the novel catalytic mechanism and evolution of DddP, an abundant peptidase-like bacterial Dimethylsulfoniopropionate lyase: a new enzyme from an old fold.
Mol.Microbiol., 98, 2015
9C11
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Crystal structure of Staphylococcal nuclease variant Delta+PHS L36R at cryogenic temperature
分子名称: CALCIUM ION, Nuclease A, THYMIDINE-3',5'-DIPHOSPHATE
著者Zhang, Y, Schlessman, J.L, Siegler, M.A, Garcia-Moreno E, B.
登録日2024-05-28
公開日2024-06-19
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Domain-swapping promoted by the introduction of a charge in the hydrophobic interior of a protein
To Be Published
4RT7
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Crystal Structure of FLT3 with a small molecule inhibitor
分子名称: 1-(5-tert-butyl-1,2-oxazol-3-yl)-3-(4-{7-[2-(morpholin-4-yl)ethoxy]imidazo[2,1-b][1,3]benzothiazol-2-yl}phenyl)urea, Receptor-type tyrosine-protein kinase FLT3
著者Zhang, Y, Zhang, C.
登録日2014-11-13
公開日2015-04-22
最終更新日2015-06-17
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Characterizing and Overriding the Structural Mechanism of the Quizartinib-Resistant FLT3 "Gatekeeper" F691L Mutation with PLX3397.
Cancer Discov, 5, 2015
6XNY
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Structure of RAG1 (R848M/E649V)-RAG2-DNA Strand Transfer Complex (Paired-Form)
分子名称: 12RSS integration strand (55-mer), 12RSS signal DNA top strand (34-mer), 23RSS integration strand (66-mer), ...
著者Zhang, Y, Corbett, E, Wu, S, Schatz, D.G.
登録日2020-07-05
公開日2020-08-26
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural basis for the activation and suppression of transposition during evolution of the RAG recombinase.
Embo J., 39, 2020
6XNX
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Structure of RAG1 (R848M/E649V)-RAG2-DNA Strand Transfer Complex (Dynamic-Form)
分子名称: 12RSS integration strand DNA (55-MER), 12RSS signal top strand DNA (34-MER), 23RSS integration strand DNA (66-MER), ...
著者Zhang, Y, Corbett, E, Wu, S, Schatz, D.G.
登録日2020-07-05
公開日2020-08-26
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structural basis for the activation and suppression of transposition during evolution of the RAG recombinase.
Embo J., 39, 2020
4XVC
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Crystal structure of an esterase from the bacterial hormone-sensitive lipase (HSL) family
分子名称: Esterase E40, phenylmethanesulfonic acid
著者Zhang, Y, Li, P.
登録日2015-01-27
公開日2015-03-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Interdomain Hydrophobic Interactions Modulate the Thermostability of Microbial Esterases from the Hormone-Sensitive Lipase Family.
J.Biol.Chem., 290, 2015
8AEY
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3 A CRYO-EM STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS FERRITIN FROM TIMEPIX3 detector
分子名称: Ferritin BfrB
著者Zhang, Y, van Schayck, J.P, Knoops, K, Peters, P.J, Ravelli, R.B.G.
登録日2022-07-14
公開日2023-01-18
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Integration of an Event-driven Timepix3 Hybrid Pixel Detector into a Cryo-EM Workflow
Microsc Microanal, 2023
6XNZ
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Structure of RAG1 (R848M/E649V)-RAG2-DNA Target Capture Complex
分子名称: 12RSS integration strand (34-mer), 12RSS non-integration strand (34-mer), 23RSS integration strand (45-mer), ...
著者Zhang, Y, Corbett, E, Wu, S, Schatz, D.G.
登録日2020-07-05
公開日2020-08-26
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural basis for the activation and suppression of transposition during evolution of the RAG recombinase.
Embo J., 39, 2020
4XV9
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B-Raf Kinase domain in complex with PLX5568
分子名称: N-{3-[(5-chloro-1H-pyrrolo[2,3-b]pyridin-3-yl)carbonyl]-2,4-difluorophenyl}-4-(trifluoromethyl)benzenesulfonamide, SULFATE ION, Serine/threonine-protein kinase B-raf
著者zhang, Y, zhang, c, wang, w.
登録日2015-01-26
公開日2015-10-28
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献RAF inhibitors that evade paradoxical MAPK pathway activation.
Nature, 526, 2015
4XZ6
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TmoX in complex with TMAO
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, GLYCEROL, ...
著者Zhang, Y.Z, Li, C.Y.
登録日2015-02-04
公開日2015-08-19
最終更新日2015-10-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mechanistic Insight into Trimethylamine N-Oxide Recognition by the Marine Bacterium Ruegeria pomeroyi DSS-3
J.Bacteriol., 197, 2015
5GMR
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Crystal structure of the mutant M3+S202W/I203F of the esterase E40
分子名称: Esterase
著者Zhang, Y.-Z, Li, P.-Y.
登録日2016-07-15
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural and Mechanistic Insights into the Improvement of the Halotolerance of a Marine Microbial Esterase by Increasing Intra- and Interdomain Hydrophobic Interactions.
Appl. Environ. Microbiol., 83, 2017
5GMS
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Crystal structure of the mutant S202W/I203F of the esterase E40
分子名称: Esterase
著者Zhang, Y.-Z, Li, P.-Y.
登録日2016-07-15
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural and Mechanistic Insights into the Improvement of the Halotolerance of a Marine Microbial Esterase by Increasing Intra- and Interdomain Hydrophobic Interactions.
Appl. Environ. Microbiol., 83, 2017
5GSN
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Tmm in complex with methimazole
分子名称: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-2-THIONE, FLAVIN-ADENINE DINUCLEOTIDE, Flavin-containing monooxygenase, ...
著者Zhang, Y.Z, Li, C.Y.
登録日2016-08-16
公開日2017-01-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.203 Å)
主引用文献Structural mechanism for bacterial oxidation of oceanic trimethylamine into trimethylamine N-oxide
Mol. Microbiol., 103, 2017
5LG4
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Crystal structure of the Sec3/Sso2 complex at 2.9 angstrom resolution
分子名称: Exocyst complex component SEC3, Protein SSO2, SULFATE ION
著者Zhang, Y.B, Dong, G.
登録日2016-07-05
公開日2017-02-08
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Sec3 promotes the initial binary t-SNARE complex assembly and membrane fusion.
Nat Commun, 8, 2017

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