Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 774 results

8WSK
DownloadVisualize
BU of 8wsk by Molmil
Crystal structure of SARS-Cov-2 main protease, pH=8.5
Descriptor: 3C-like proteinase nsp5
Authors:Jiang, H.H, Zhou, X.L, Zhang, J, Li, J.
Deposit date:2023-10-17
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure of SARS-Cov-2 main protease, pH=8.5
To Be Published
8WSH
DownloadVisualize
BU of 8wsh by Molmil
Crystal structure of SARS-Cov-2 main protease, pH=4.0
Descriptor: Replicase polyprotein 1ab
Authors:Zhou, X.L, Jiang, H.H, Zhang, J, Li, J.
Deposit date:2023-10-17
Release date:2024-10-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of SARS-Cov-2 main protease ,pH=4.0
To Be Published
5HRE
DownloadVisualize
BU of 5hre by Molmil
The crystal structure of AsfvPolX:DNA3 binary complex
Descriptor: DNA (5'-D(P*AP*GP*GP*AP*TP*CP*CP*T)-3'), DNA polymerase beta-like protein, FORMIC ACID, ...
Authors:Chen, Y.Q, Zhang, J, Gan, J.H.
Deposit date:2016-01-23
Release date:2017-01-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
To Be Published
8HUX
DownloadVisualize
BU of 8hux by Molmil
Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with S217622
Descriptor: 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione
Authors:Li, W.W, Zhang, J, Li, J.
Deposit date:2022-12-24
Release date:2023-06-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural basis for the inhibition of coronaviral main proteases by ensitrelvir.
Structure, 31, 2023
8HUR
DownloadVisualize
BU of 8hur by Molmil
Crystal structure of SARS-Cov-2 main protease in complex with S217622
Descriptor: 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione
Authors:Zhou, X.L, Zhang, J, Li, J.
Deposit date:2022-12-24
Release date:2023-06-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural basis for the inhibition of coronaviral main proteases by ensitrelvir.
Structure, 31, 2023
8HUS
DownloadVisualize
BU of 8hus by Molmil
Crystal structure of SARS main protease in complex with S217622
Descriptor: 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione
Authors:Lin, C, Zhang, J, Li, J.
Deposit date:2022-12-24
Release date:2023-06-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural basis for the inhibition of coronaviral main proteases by ensitrelvir.
Structure, 31, 2023
5KIP
DownloadVisualize
BU of 5kip by Molmil
Asymmetric unit for the coat proteins of phage Qbeta
Descriptor: Coat protein
Authors:Gorzelnik, K.V, Cui, Z, Zhang, J.
Deposit date:2016-06-16
Release date:2016-10-05
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Asymmetric cryo-EM structure of the canonical Allolevivirus Q beta reveals a single maturation protein and the genomic ssRNA in situ.
Proc.Natl.Acad.Sci.USA, 113, 2016
8IM6
DownloadVisualize
BU of 8im6 by Molmil
Crystal structure of HCoV 229E main protease in complex with PF07304814
Descriptor: 3C-like proteinase, [(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate
Authors:Zhou, Y.R, Zeng, P, Zhang, J, Li, J.
Deposit date:2023-03-06
Release date:2024-03-06
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural basis of main proteases of HCoV-229E bound to inhibitor PF-07304814 and PF-07321332.
Biochem.Biophys.Res.Commun., 657, 2023
7YFG
DownloadVisualize
BU of 7yfg by Molmil
Structure of the Rat GluN1-GluN2C NMDA receptor in complex with glycine and glutamate (major class in asymmetry)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ...
Authors:Zhang, M, Zhang, J, Guo, F, Li, Y, Zhu, S.
Deposit date:2022-07-08
Release date:2023-03-29
Last modified:2023-05-31
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Distinct structure and gating mechanism in diverse NMDA receptors with GluN2C and GluN2D subunits.
Nat.Struct.Mol.Biol., 30, 2023
6UFM
DownloadVisualize
BU of 6ufm by Molmil
Cocrystal Structure of the Nocardia farcinica ileS T-box riboswitch in complex with its cognate tRNA
Descriptor: RNA (77-MER), RNA (98-MER), SULFATE ION
Authors:Suddala, K.C, Zhang, J.
Deposit date:2019-09-24
Release date:2019-12-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:High-affinity recognition of specific tRNAs by an mRNA anticodon-binding groove.
Nat.Struct.Mol.Biol., 26, 2019
6K40
DownloadVisualize
BU of 6k40 by Molmil
Crystal structure of alkyl hydroperoxide reductase from D. radiodurans R1
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alkyl hydroperoxide reductase AhpD, DI(HYDROXYETHYL)ETHER, ...
Authors:Kim, M.-K, Zhang, J, Zhao, L.
Deposit date:2019-05-22
Release date:2020-05-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of the AhpD-like protein DR1765 from Deinococcus radiodurans R1.
Biochem.Biophys.Res.Commun., 529, 2020
5VLZ
DownloadVisualize
BU of 5vlz by Molmil
Backbone model for phage Qbeta capsid
Descriptor: Capsid protein, Maturation protein A2
Authors:Cui, Z, Zhang, J.
Deposit date:2017-04-26
Release date:2017-10-18
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structures of Q beta virions, virus-like particles, and the Q beta-MurA complex reveal internal coat proteins and the mechanism of host lysis.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3EMN
DownloadVisualize
BU of 3emn by Molmil
The Crystal Structure of Mouse VDAC1 at 2.3 A resolution
Descriptor: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Voltage-dependent anion-selective channel protein 1
Authors:Ujwal, R, Cascio, D, Colletier, J.-P, Faham, S, Zhang, J, Toro, L, Ping, P, Abramson, J.
Deposit date:2008-09-24
Release date:2008-12-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating
Proc.Natl.Acad.Sci.USA, 105, 2008
3ZDC
DownloadVisualize
BU of 3zdc by Molmil
Structure of E. coli ExoIX in complex with the palindromic 5ov4 DNA oligonucleotide, potassium and calcium
Descriptor: 5OV4 DNA, 5'-D(*AP*AP*AP*AP*GP*CP*GP*TP*AP*CP*GP*CP)-3', ACETATE ION, ...
Authors:Hemsworth, G.R, Anstey-Gilbert, C.S, Flemming, C.S, Hodskinson, M.R.G, Zhang, J, Sedelnikova, S.E, Stillman, T.J, Sayers, J.R, Artymiuk, P.J.
Deposit date:2012-11-26
Release date:2013-07-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:The Structure of E. Coli Exoix - Implications for DNA Binding and Catalysis in Flap Endonucleases
Nucleic Acids Res., 41, 2013
3ZDA
DownloadVisualize
BU of 3zda by Molmil
Structure of E. coli ExoIX in complex with a fragment of the Flap1 DNA oligonucleotide, potassium and magnesium
Descriptor: 5'-D(*AP*AP*GP*CP*GP*CP)-3', 5'-D(*GP*CP*GP*CP)-3', MAGNESIUM ION, ...
Authors:Hemsworth, G.R, Anstey-Gilbert, C.S, Flemming, C.S, Hodskinson, M.R.G, Zhang, J, Sedelnikova, S.E, Stillman, T.J, Sayers, J.R, Artymiuk, P.J.
Deposit date:2012-11-26
Release date:2013-07-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Structure of E. Coli Exoix - Implications for DNA Binding and Catalysis in Flap Endonucleases
Nucleic Acids Res., 41, 2013
1RZQ
DownloadVisualize
BU of 1rzq by Molmil
Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase from Achromobacter Cycloclastes at pH5.0
Descriptor: ACETIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
Authors:Li, H.T, Wang, C, Chang, T, Chang, W.C, Liu, M.Y, Le Gall, J, Gui, L.L, Zhang, J.P, An, X.M, Chang, W.R.
Deposit date:2003-12-26
Release date:2004-03-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:pH-profile crystal structure studies of C-terminal despentapeptide nitrite reductase from Achromobacter cycloclastes
Biochem.Biophys.Res.Commun., 316, 2004
5JIM
DownloadVisualize
BU of 5jim by Molmil
Crystal Structure of Human Transthyretin in Complex with Perfluoroktansulfonsyra (PFOS)
Descriptor: SODIUM ION, Transthyretin, heptadecafluoro-1-octanesulfonic acid
Authors:Begum, A, Zhang, J, Olofsson, A, Andersson, P, Sauer-Eriksson, A.E.
Deposit date:2016-04-22
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structure-Based Virtual Screening Protocol for in Silico Identification of Potential Thyroid Disrupting Chemicals Targeting Transthyretin.
Environ. Sci. Technol., 50, 2016
1RZP
DownloadVisualize
BU of 1rzp by Molmil
Crystal Structure of C-Terminal Despentapeptide Nitrite Reductase from Achromobacter Cycloclastes at pH6.2
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
Authors:Li, H.T, Wang, C, Chang, T, Chang, W.C, Liu, M.Y, Le Gall, J, Gui, L.L, Zhang, J.P, An, X.M, Chang, W.R.
Deposit date:2003-12-26
Release date:2004-03-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:pH-profile crystal structure studies of C-terminal despentapeptide nitrite reductase from Achromobacter cycloclastes
Biochem.Biophys.Res.Commun., 316, 2004
5Y4U
DownloadVisualize
BU of 5y4u by Molmil
Crystal structure of Grx domain of Grx3 from Saccharomyces cerevisiae
Descriptor: Monothiol glutaredoxin-3
Authors:Chi, C.B, Tang, Y.J, Zhang, J.H, Dai, Y.N, Abdalla, M, Chen, Y.X, Zhou, C.Z.
Deposit date:2017-08-05
Release date:2018-08-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Biochemical Insights into the Multiple Functions of Yeast Grx3.
J.Mol.Biol., 430, 2018
5Y4T
DownloadVisualize
BU of 5y4t by Molmil
Crystal structure of Trx domain of Grx3 from Saccharomyces cerevisiae
Descriptor: GLYCEROL, Glutaredoxin
Authors:Chi, C.B, Tang, Y.J, Zhang, J.H, Dai, Y.N, Abdalla, M, Chen, Y.X, Zhou, C.Z.
Deposit date:2017-08-05
Release date:2018-08-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and Biochemical Insights into the Multiple Functions of Yeast Grx3.
J.Mol.Biol., 430, 2018
2I7K
DownloadVisualize
BU of 2i7k by Molmil
Solution Structure of the Bromodomain of Human BRD7 Protein
Descriptor: Bromodomain-containing protein 7
Authors:Sun, H, Liu, J, Zhang, J, Huang, H, Wu, J, Shi, Y.
Deposit date:2006-08-31
Release date:2007-07-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of BRD7 bromodomain and its interaction with acetylated peptides from histone H3 and H4
Biochem.Biophys.Res.Commun., 358, 2007
5Y4M
DownloadVisualize
BU of 5y4m by Molmil
Discoidin domain of human CASPR2
Descriptor: 1,2-ETHANEDIOL, human CASPR2 Disc domain
Authors:Liu, H, Xu, F, Zhang, J, Liang, W.
Deposit date:2017-08-04
Release date:2018-08-08
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Structural mapping of hot spots within human CASPR2 discoidin domain for autoantibody recognition.
J. Autoimmun., 96, 2019
5JIQ
DownloadVisualize
BU of 5jiq by Molmil
Crystal Structure of Human Transthyretin in Complex with 2,2',4,4'-tetrahydroxybenzophenone (BP2)
Descriptor: GLYCEROL, SODIUM ION, Transthyretin, ...
Authors:Begum, A, Zhang, J, Olofsson, A, Andersson, P, Sauer-Eriksson, A.E.
Deposit date:2016-04-22
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure-Based Virtual Screening Protocol for in Silico Identification of Potential Thyroid Disrupting Chemicals Targeting Transthyretin.
Environ. Sci. Technol., 50, 2016
2JWE
DownloadVisualize
BU of 2jwe by Molmil
Solution structure of the second PDZ domain from human zonula occludens-1: A dimeric form with 3D domain swapping
Descriptor: Tight junction protein ZO-1
Authors:Ji, P, Wu, J.W, Zhang, J.H, Yang, Y.S, Wu, J.H, Shi, Y.Y.
Deposit date:2007-10-10
Release date:2007-10-30
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the second PDZ domain of Zonula Occludens 1
Proteins, 79, 2011
8HQI
DownloadVisualize
BU of 8hqi by Molmil
Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with inhibitor YH-53
Descriptor: 3C-like proteinase nsp5, N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
Authors:Li, W.W, Zhang, J, Li, J.
Deposit date:2022-12-13
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of SARS-Cov-2 main protease P132H mutant in complex with inhibitor YH-53
To Be Published

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon