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PDB: 756 results

8XG2
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BU of 8xg2 by Molmil
The structure of HLA-A/Pep14
Descriptor: Beta-2-microglobulin, HLA class I heavy chain, Spike protein S1
Authors:Zhang, J.N, Yue, C, Liu, J.
Deposit date:2023-12-14
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Uncommon P1 Anchor-featured Viral T Cell Epitope Preference within HLA-A*2601 and HLA-A*0101 Individuals.
Immunohorizons, 8, 2024
3TC1
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BU of 3tc1 by Molmil
Crystal Structure of Octaprenyl Pyrophosphate Synthase from Helicobacter pylori
Descriptor: MAGNESIUM ION, Octaprenyl Pyrophosphate Synthase
Authors:Zhang, J.Y, Zhang, X.L, Li, D.F, Zou, Q.M, Wang, D.C.
Deposit date:2011-08-08
Release date:2011-08-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Octaprenyl Pyrophosphate Synthase from Helicobacter pylori
To be Published
1A4F
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BU of 1a4f by Molmil
BAR-HEADED GOOSE HEMOGLOBIN (OXY FORM)
Descriptor: HEMOGLOBIN (ALPHA CHAIN), HEMOGLOBIN (BETA CHAIN), OXYGEN MOLECULE, ...
Authors:Zhang, J, Gu, X.
Deposit date:1998-01-29
Release date:1998-04-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of a high oxygen affinity species of haemoglobin (bar-headed goose haemoglobin in the oxy form).
J.Mol.Biol., 255, 1996
8WY8
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BU of 8wy8 by Molmil
Cryo-EM structure of DSR2 apo complex
Descriptor: SIR2 family protein
Authors:Zhang, J.T, Jia, N, Liu, X.Y.
Deposit date:2023-10-30
Release date:2024-04-10
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for phage-mediated activation and repression of bacterial DSR2 anti-phage defense system.
Nat Commun, 15, 2024
8WY9
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BU of 8wy9 by Molmil
Cryo-EM structure of DSR2 apo (partial) complex
Descriptor: SIR2 family protein
Authors:Zhang, J.T, Jia, N, Liu, X.Y.
Deposit date:2023-10-30
Release date:2024-04-10
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Structural basis for phage-mediated activation and repression of bacterial DSR2 anti-phage defense system.
Nat Commun, 15, 2024
8WYD
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BU of 8wyd by Molmil
Cryo-EM structure of DSR2-DSAD1 complex
Descriptor: Bacillus phage SPbeta DSAD1 protein, SIR2 family protein
Authors:Zhang, J.T, Jia, N, Liu, X.Y.
Deposit date:2023-10-30
Release date:2024-04-10
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Structural basis for phage-mediated activation and repression of bacterial DSR2 anti-phage defense system.
Nat Commun, 15, 2024
8K75
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BU of 8k75 by Molmil
N-terminal domain of FIPV nucleocapsid protein
Descriptor: Nucleoprotein
Authors:Zhang, J.T, Liang, R, Shi, Y.J, Peng, G.Q.
Deposit date:2023-07-26
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:N-terminal domain of FIPV nucleocapsid protein
To Be Published
4TZW
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BU of 4tzw by Molmil
Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization
Descriptor: Ribosome-associated protein L7Ae-like, STRONTIUM ION, T-box Stem I, ...
Authors:Zhang, J, Ferre-D'Amare, A.R.
Deposit date:2014-07-11
Release date:2014-09-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (4.671 Å)
Cite:Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration.
Structure, 22, 2014
4TZZ
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BU of 4tzz by Molmil
Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization
Descriptor: MAGNESIUM ION, Ribosome-associated protein L7Ae-like, T-box Stem I RNA, ...
Authors:Zhang, J, Ferre-D'Amare, A.R.
Deposit date:2014-07-11
Release date:2014-09-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.64 Å)
Cite:Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration.
Structure, 22, 2014
4TZP
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BU of 4tzp by Molmil
As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein
Descriptor: Ribosome-associated protein L7Ae-like, engineered tRNA, glyQ T-box Stem I
Authors:Zhang, J, Ferre-D'Amare, A.R.
Deposit date:2014-07-10
Release date:2014-09-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (8.503 Å)
Cite:Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration.
Structure, 22, 2014
4TZX
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BU of 4tzx by Molmil
Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+
Descriptor: ADENINE, MAGNESIUM ION, Vibrio vulnificus Adenine Riboswitch
Authors:Zhang, J, Ferre-D'Amare, A.R.
Deposit date:2014-07-11
Release date:2014-09-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration.
Structure, 22, 2014
4TZV
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BU of 4tzv by Molmil
Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate post crystallization
Descriptor: Ribosome-associated protein L7Ae-like, T-box stem I, engineered tRNA
Authors:Zhang, J, Ferre-D'Amare, A.R.
Deposit date:2014-07-11
Release date:2014-09-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (5.03 Å)
Cite:Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration.
Structure, 22, 2014
4TZY
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BU of 4tzy by Molmil
Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+
Descriptor: ADENINE, MAGNESIUM ION, STRONTIUM ION, ...
Authors:Zhang, J, Ferre-D'Amare, A.R.
Deposit date:2014-07-11
Release date:2014-09-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration.
Structure, 22, 2014
5D6P
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BU of 5d6p by Molmil
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-ethyl-3-[4-(hydroxymethyl)-5-(1H-pyrrol-2-yl)-1,3-thiazol-2-yl]urea, DNA gyrase subunit B, ...
Authors:Zhang, J, Yang, Q, Cross, J.B, Romero, J.A.C, Ryan, M.D, Lippa, B, Dolle, R.E, Andersen, O.A, Barker, J, Cheng, R.K, Kahmann, J, Felicetti, B, Wood, M, Scheich, C.
Deposit date:2015-08-12
Release date:2015-11-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery of Azaindole Ureas as a Novel Class of Bacterial Gyrase B Inhibitors.
J.Med.Chem., 58, 2015
5D6Q
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BU of 5d6q by Molmil
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-ethyl-3-{4-[(E)-2-(pyridin-3-yl)ethenyl]-5-(1H-pyrrol-2-yl)-1,3-thiazol-2-yl}urea, DNA gyrase subunit B, ...
Authors:Zhang, J, Yang, Q, Cross, J.B, Romero, J.A.C, Ryan, M.D, Lippa, B, Dolle, R.E, Andersen, O.A, Barker, J, Cheng, R.K, Kahmann, J, Felicetti, B, Wood, M, Scheich, C.
Deposit date:2015-08-12
Release date:2015-11-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Discovery of Azaindole Ureas as a Novel Class of Bacterial Gyrase B Inhibitors.
J.Med.Chem., 58, 2015
5D7C
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BU of 5d7c by Molmil
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-ethyl-3-[1-(pyridin-2-yl)-6-(pyridin-3-yl)-1H-pyrrolo[3,2-b]pyridin-3-yl]urea, DNA gyrase subunit B, ...
Authors:Zhang, J, Yang, Q, Cross, J.B, Romero, J.A.C, Ryan, M.D, Lippa, B, Dolle, R.E, Andersen, O.A, Barker, J, Cheng, R.K, Kahmann, J, Felicetti, B, Wood, M, Scheich, C.
Deposit date:2015-08-13
Release date:2015-11-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Discovery of Azaindole Ureas as a Novel Class of Bacterial Gyrase B Inhibitors.
J.Med.Chem., 58, 2015
6TJY
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BU of 6tjy by Molmil
Crystal structure of haemagglutinin from (A/seal/Germany/1/2014) seal H10N7 influenza virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Zhang, J, Xiong, X, Purkiss, A, Walker, P, Gamblin, S, Skehel, J.J.
Deposit date:2019-11-27
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals.
Cell Host Microbe, 28, 2020
6TJW
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BU of 6tjw by Molmil
Crystal structure of the haemagglutinin mutant (Gln226Leu, Del228) from an H10N7 seal influenza virus isolated in Germany
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhang, J, Xiong, X, Purkiss, A, Walker, P, Gamblin, S, Skehel, J.J.
Deposit date:2019-11-27
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals.
Cell Host Microbe, 28, 2020
8W8D
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BU of 8w8d by Molmil
Structural mechanism of inhibition of the Rho transcription termination factor by Rof
Descriptor: Protein rof, Transcription termination factor Rho
Authors:Zhang, J, Wang, C.
Deposit date:2023-09-01
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:A widely conserved protein Rof inhibits transcription termination factor Rho and promotes Salmonella virulence program.
Nat Commun, 15, 2024
4TUW
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BU of 4tuw by Molmil
drosophila stem-loop binding protein complexed with histone mRNA stem-loop, phospho mimic of TPNK and C-terminal region
Descriptor: CALCIUM ION, HISTONE MRNA 3' STEM LOOP, Histone RNA hairpin-binding protein
Authors:Zhang, J.
Deposit date:2014-06-25
Release date:2014-07-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
4TV0
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BU of 4tv0 by Molmil
Drosophila stem-loop binding protein complexed with histone mRNA stem-loop, Selenomethionine derivative
Descriptor: CALCIUM ION, Histone RNA hairpin-binding protein, RNA (26-MER)
Authors:Zhang, J.
Deposit date:2014-06-25
Release date:2014-09-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
4TUX
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BU of 4tux by Molmil
drosophila stem-loop binding protein complexed with histone mRNA stem-loop
Descriptor: CALCIUM ION, Histone RNA hairpin-binding protein, RNA (26-MER)
Authors:Zhang, J.
Deposit date:2014-06-25
Release date:2014-07-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
8WYC
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BU of 8wyc by Molmil
Cryo-EM structure of DSR2 (H171A)-tube-NAD+ (partial) complex
Descriptor: Bacillus phage SPR Tube protein, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SIR2-like domain-containing protein
Authors:Zhang, J.T, Jia, N, Liu, X.Y.
Deposit date:2023-10-30
Release date:2024-04-10
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis for phage-mediated activation and repression of bacterial DSR2 anti-phage defense system.
Nat Commun, 15, 2024
8WYB
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BU of 8wyb by Molmil
Cryo-EM structure of DSR2 (H171A)-tube-NAD+ complex
Descriptor: Bacillus phage SPR Tube protein, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SIR2-like domain-containing protein
Authors:Zhang, J.T, Jia, N, Liu, X.Y.
Deposit date:2023-10-30
Release date:2024-04-10
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Structural basis for phage-mediated activation and repression of bacterial DSR2 anti-phage defense system.
Nat Commun, 15, 2024
8FDW
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BU of 8fdw by Molmil
Cryo-EM structure of SARS-CoV-2 postfusion spike in membrane
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S2, ...
Authors:Zhang, J, Shi, W, Cai, Y.F, Zhu, H.S, Peng, H.Q, Voyer, J, Volloch, S.R, Cao, H, Mayer, M.L, Song, K.K, Xu, C, Lu, J.M, Chen, B.
Deposit date:2022-12-05
Release date:2023-05-10
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-EM structure of SARS-CoV-2 postfusion spike in membrane.
Nature, 619, 2023

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PDB entries from 2024-07-31

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