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PDB: 437 件
5UZ6
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BU of 5uz6 by Molmil
RNA hairpin structure containing 2-MeImp-oligo analogue
分子名称: RNA (25-MER), RNA (5'-D(*(8OS))-R(P*CP*AP*CP*CP*UP*CP*A)-3')
著者Zhang, W, Oh, S.S, Szostak, J.W.
登録日2017-02-24
公開日2018-02-21
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide.
J. Am. Chem. Soc., 140, 2018
5V0K
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BU of 5v0k by Molmil
RNA duplex with 2-MeImpG analogue bound-3 binding sites
分子名称: 5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-3')
著者Zhang, W, Tam, C.P, Szostak, J.W.
登録日2017-02-28
公開日2017-03-08
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献RNA duplex with 2-MeImpG analogue bound-3 binding sites
To Be Published
5UX3
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BU of 5ux3 by Molmil
RNA hairpin structure containing 2-MeImpG monomer analogue and 2-MeImp-oligomer analogue
分子名称: 5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine, RNA (25-MER), RNA (5'-D(*(RG))-R(P*CP*AP*CP*CP*UP*CP*A)-3')
著者Zhang, W, Oh, S.S, Szostak, J.W.
登録日2017-02-21
公開日2018-02-21
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide.
J. Am. Chem. Soc., 140, 2018
5DHC
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BU of 5dhc by Molmil
Cooperativity and Downstream Binding in RNA Replication
分子名称: GUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3')
著者Zhang, W, Fahrenbach, A.C, Tam, C.P, Szostak, J.W.
登録日2015-08-30
公開日2016-12-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016
3HCK
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BU of 3hck by Molmil
NMR ensemble of the uncomplexed human HCK SH2 domain, 20 structures
分子名称: HCK SH2
著者Zhang, W, Smithgall, T.E, Gmeiner, W.H.
登録日1997-03-31
公開日1997-10-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Sequential assignment and secondary structure determination for the Src homology 2 domain of hematopoietic cellular kinase.
FEBS Lett., 406, 1997
5HBY
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BU of 5hby by Molmil
RNA primer-template complex with 2-methylimidazole-activated monomer analogue-3 binding sites
分子名称: MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid
著者Zhang, W, Tam, C.P, Wang, J, Szostak, J.W.
登録日2016-01-03
公開日2016-12-07
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016
8SPI
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BU of 8spi by Molmil
Crystal structure of chimeric omicron RBD (strain XBB.1.5) complexed with human ACE2
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Zhang, W, Shi, K, Aihara, H, Li, F.
登録日2023-05-03
公開日2023-08-02
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.06 Å)
主引用文献Structural evolution of SARS-CoV-2 omicron in human receptor recognition.
J.Virol., 97, 2023
8SPH
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BU of 8sph by Molmil
Crystal structure of chimeric omicron RBD (strain XBB.1) complexed with human ACE2
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Zhang, W, Shi, K, Aihara, H, Li, F.
登録日2023-05-03
公開日2023-08-02
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Structural evolution of SARS-CoV-2 omicron in human receptor recognition.
J.Virol., 97, 2023
5DHB
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BU of 5dhb by Molmil
Cooperativity and Downstream Binding in RNA Replication
分子名称: GUANOSINE-5'-MONOPHOSPHATE, RNA (5'-R(*(LCC)P*(TLN)P*(LCG)P*UP*AP*CP*A)-3')
著者Zhang, W, Fahrenbach, A.C, Tam, C.P, Szostak, J.W.
登録日2015-08-30
公開日2016-12-07
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016
4YDU
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BU of 4ydu by Molmil
Crystal structure of E. coli YgjD-YeaZ heterodimer in complex with ADP
分子名称: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, FE (III) ION, ...
著者Zhang, W, Collinet, B, Perrochia, L, Durand, D, Van Tilbeurgh, H.
登録日2015-02-23
公開日2015-03-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献The ATP-mediated formation of the YgjD-YeaZ-YjeE complex is required for the biosynthesis of tRNA t6A in Escherichia coli.
Nucleic Acids Res., 43, 2015
4IFS
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BU of 4ifs by Molmil
Crystal structure of the hSSRP1 Middle domain
分子名称: CHLORIDE ION, FACT complex subunit SSRP1
著者Zhang, W.J, Zeng, F.X, Shao, C, Liu, Y.W, Niu, L.W, Li, X, Teng, M.K.
登録日2012-12-15
公開日2014-01-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Crystal structure of the hSSRP1 Middle domain
To be Published
5HBW
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BU of 5hbw by Molmil
RNA primer-template complex with 2-methylimidazole-activated monomer analogue
分子名称: RNA (5'-R(*(LCC)P*(TLN)P*(LCG)P*UP*AP*CP*A)-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid
著者Zhang, W, Tam, C.P, Szostak, J.W.
登録日2016-01-03
公開日2016-12-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016
5HBX
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BU of 5hbx by Molmil
RNA primer-template complex with 2-methylimidazole-activated monomer analogue-2 binding sites
分子名称: RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid
著者Zhang, W, Tam, C.P, Szostak, J.W.
登録日2016-01-03
公開日2016-12-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016
1OR4
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BU of 1or4 by Molmil
Crystal Structure of HemAT sensor domain from B.subtilis in the cyano-liganded form
分子名称: CYANIDE ION, Heme-based aerotactic transducer hemAT, PROTOPORPHYRIN IX CONTAINING FE
著者Zhang, W, Phillips Jr, G.N.
登録日2003-03-11
公開日2003-09-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure of the oxygen sensor in Bacillus subtilis: signal transduction of chemotaxis by control of symmetry.
Structure, 11, 2003
1OR6
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BU of 1or6 by Molmil
Crystal Structure of HemAT sensor domain from B.subtilis in the unliganded form
分子名称: Heme-based aerotactic transducer hemAT, PROTOPORPHYRIN IX CONTAINING FE
著者Zhang, W, Phillips Jr, G.N.
登録日2003-03-11
公開日2003-09-23
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Structure of the oxygen sensor in Bacillus subtilis: signal transduction of chemotaxis by control of symmetry.
Structure, 11, 2003
5GQ0
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BU of 5gq0 by Molmil
Crystal structure of the Epithiospecifier Protein, ESP from Arabidopsis thaliana
分子名称: Epithiospecifier protein
著者Zhang, W, Feng, Y.
登録日2016-08-05
公開日2016-08-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Crystal structure of the Epithiospecifier Protein, ESP from Arabidopsis thaliana provides insights into its product specificity
Biochem.Biophys.Res.Commun., 478, 2016
5GQT
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BU of 5gqt by Molmil
Crystal structure of a specifier Protein from Arabidopsis thaliana
分子名称: Nitrile-specifier protein 1
著者Zhang, W, Feng, Y.
登録日2016-08-08
公開日2017-06-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.022 Å)
主引用文献Crystal structure of the nitrile-specifier protein NSP1 from Arabidopsis thaliana
Biochem. Biophys. Res. Commun., 488, 2017
1U7S
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BU of 1u7s by Molmil
Crystal structure of Native Sperm Whale myoglobin from low ionic strength enviroment (Form 1)
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Zhang, W, Phillips Jr, G.N.
登録日2004-08-04
公開日2005-07-19
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments.
Proteins, 70, 2008
6AZ4
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BU of 6az4 by Molmil
RNA hairpin complex with guanosine dinucleotide ligand G(5')ppp(5')G
分子名称: DIGUANOSINE-5'-TRIPHOSPHATE, RNA (32-MER), RNA (5'-R(*CP*AP*GP*CP*AP*GP*CP*AP*G)-3')
著者Zhang, W, Szostak, J.W.
登録日2017-09-09
公開日2018-02-21
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide.
J. Am. Chem. Soc., 140, 2018
6BMD
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BU of 6bmd by Molmil
RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper
分子名称: RNA (5'-D(*(GP3))-R(P*CP*AP*CP*CP*UP*CP*A)-3'), RNA (5'-R(P*GP*AP*GP*GP*UP*GP*(LCC)P*(LCC)P*GP*AP*GP*CP*GP*CP*GP*AP*AP*AP*GP*CP*GP*CP*UP*C)-3')
著者Zhang, W, Szostak, J.W.
登録日2017-11-14
公開日2018-02-21
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide.
J. Am. Chem. Soc., 140, 2018
6C8D
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BU of 6c8d by Molmil
RNA-dGMP complex with Mg ion
分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')
著者Zhang, W, Szostak, J.W.
登録日2018-01-24
公開日2018-05-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
6C8K
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BU of 6c8k by Molmil
RNA-activated 2-AIpG monomer complex, 30 min soaking
分子名称: 2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')
著者Zhang, W, Szostak, J.W.
登録日2018-01-24
公開日2018-05-30
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.259 Å)
主引用文献Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
6C8O
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BU of 6c8o by Molmil
RNA-activated 2-AIpG monomer, 3h soaking
分子名称: 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3')
著者Zhang, W, Szostak, J.W.
登録日2018-01-25
公開日2018-05-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
6C8I
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BU of 6c8i by Molmil
RNA-activated 2-AIpG monomer complex, 5 min soaking
分子名称: 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')
著者Zhang, W, Szostak, J.W.
登録日2018-01-24
公開日2018-05-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
6C8L
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BU of 6c8l by Molmil
RNA-activated 2-AIpG monomer complex, 1h soaking
分子名称: 2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')
著者Zhang, W, Szostak, J.W.
登録日2018-01-25
公開日2018-05-30
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018

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