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PDB: 29 results

8J1Z
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BU of 8j1z by Molmil
The global structure of pre50S related to DbpA in state3
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Yu, T, Zeng, F.
Deposit date:2023-04-13
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:PTC Remodeling in Pre50S Intermediates: Insights into the Role of DEAD-box RNA Helicase DbpA
To Be Published
4CXP
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BU of 4cxp by Molmil
Structure of bifunctional endonuclease (AtBFN2) from Arabidopsis thaliana in complex with sulfate
Descriptor: ENDONUCLEASE 2, PENTAETHYLENE GLYCOL, SULFATE ION, ...
Authors:Yu, T.-F, Maestre-Reyna, M, Ko, C.-Y, Ko, T.-P, Sun, Y.-J, Lin, T.-Y, Shaw, J.-F, Wang, A.H.-J.
Deposit date:2014-04-08
Release date:2014-07-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Structural Insights of the Ssdna Binding Site in the Multifunctional Endonuclease Atbfn2 from Arabidopsis Thaliana.
Plos One, 9, 2014
4CWM
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BU of 4cwm by Molmil
High-glycosylation crystal structure of the bifunctional endonuclease (AtBFN2) from Arabidopsis thaliana
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ENDONUCLEASE 2, ZINC ION, ...
Authors:Yu, T.-F, Maestre-Reyna, M, Ko, C.-Y, Ko, T.-P, Sun, Y.-J, Lin, T.-Y, Shaw, J.-F, Wang, A.H.-J.
Deposit date:2014-04-03
Release date:2014-07-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural Insights of the Ssdna Binding Site in the Multifunctional Endonuclease Atbfn2 from Arabidopsis Thaliana.
Plos One, 9, 2014
4CXO
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BU of 4cxo by Molmil
bifunctional endonuclease in complex with ssDNA
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, ENDONUCLEASE 2, SULFATE ION, ...
Authors:Yu, T.-F, Maestre-Reyna, M, Ko, C.-Y, Ko, T.-P, Sun, Y.-J, Lin, T.-Y, Shaw, J.-F, Wang, A.H.-J.
Deposit date:2014-04-08
Release date:2014-07-23
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural Insights of the Ssdna Binding Site in the Multifunctional Endonuclease Atbfn2 from Arabidopsis Thaliana.
Plos One, 9, 2014
4CXV
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BU of 4cxv by Molmil
Structure of bifunctional endonuclease (AtBFN2) in complex with phosphate.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ENDONUCLEASE 2, ...
Authors:Yu, T.-F, Maestre-Reyna, M, Ko, C.-Y, Ko, T.-P, Sun, Y.-J, Lin, T.-Y, Shaw, J.-F, Wang, A.H.-J.
Deposit date:2014-04-09
Release date:2014-07-23
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Insights of the Ssdna Binding Site in the Multifunctional Endonuclease Atbfn2 from Arabidopsis Thaliana.
Plos One, 9, 2014
8KIE
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BU of 8kie by Molmil
Structure of YchF with 50S ribosomal subunit (local map)
Descriptor: 23S rRNA (partial), 50S ribosomal protein L14, 50S ribosomal protein L19, ...
Authors:Yu, T, Li, X, Zeng, F.
Deposit date:2023-08-23
Release date:2024-08-28
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structure basis of translation regulation by YchF bound to ribosome
To Be Published
8A6M
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BU of 8a6m by Molmil
Phosphatidylserine-dependent synaptic vesicle membrane sculpting by synaptogyrin
Descriptor: Isoform 1B of Synaptogyrin-1
Authors:Yu, T.K, Eastep, G.N, Flores, D, Zweckstetter, M.
Deposit date:2022-06-18
Release date:2023-05-24
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Phosphatidylserine-dependent structure of synaptogyrin remodels the synaptic vesicle membrane.
Nat.Struct.Mol.Biol., 30, 2023
8W51
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BU of 8w51 by Molmil
Structure of YchF(H114A) on E.coli 50S ribosomal subunit
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Yu, T, Li, X, Zeng, F.
Deposit date:2023-08-25
Release date:2024-08-28
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structure basis of translation regulation by YchF bound to ribosome
To Be Published
3TNV
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BU of 3tnv by Molmil
Acylphosphatase with thermophilic surface and mesophilic core
Descriptor: Acylphosphatase, PHOSPHATE ION
Authors:Yu, T.H, Chan, C.H.
Deposit date:2011-09-02
Release date:2012-09-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Protein surface is a preferred site for thermostability engineering
To be Published
3TOQ
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BU of 3toq by Molmil
Acylphosphatase with mesophilic surface and thermophilic core
Descriptor: Acylphosphatase-1, PHOSPHATE ION
Authors:Yu, T.H.
Deposit date:2011-09-06
Release date:2012-09-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Protein surface is the preferred region for thermostability engineering
To be Published
6IGO
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BU of 6igo by Molmil
Crystal structure of myelin protein zero-like protein 1 (MPZL1)
Descriptor: Myelin protein zero-like protein 1
Authors:Yu, T.
Deposit date:2018-09-25
Release date:2018-11-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.746 Å)
Cite:Structural and biochemical studies of the extracellular domain of Myelin protein zero-like protein 1
Biochem. Biophys. Res. Commun., 506, 2018
6IGT
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BU of 6igt by Molmil
MPZL1 mutant - V145G, Q146K, P147T and G148S
Descriptor: Myelin protein zero-like protein 1
Authors:Yu, T.
Deposit date:2018-09-26
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.404 Å)
Cite:Structural and biochemical studies of the extracellular domain of Myelin protein zero-like protein 1
Biochem. Biophys. Res. Commun., 506, 2018
6IGW
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BU of 6igw by Molmil
MPZL1 mutant - S86G, V145G, Q146K,P147T,G148S
Descriptor: Myelin protein zero-like protein 1
Authors:Yu, T.
Deposit date:2018-09-26
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.979 Å)
Cite:Structural and biochemical studies of the extracellular domain of Myelin protein zero-like protein 1
Biochem. Biophys. Res. Commun., 506, 2018
4Y3I
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BU of 4y3i by Molmil
PAS-GAF fragment from Deinococcus radiodurans BphP assembled with BV - Y307S, low dose
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Li, F, Burgie, E.S, Yu, T, Heroux, A, Schatz, G.C, Vierstra, R.D, Orville, A.M.
Deposit date:2015-02-10
Release date:2015-05-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
J.Am.Chem.Soc., 137, 2015
4Y5F
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BU of 4y5f by Molmil
PAS-GAF fragment from Deinococcus radiodurans BphP assembled with BV - Y307S, high dose
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome
Authors:Li, F, Burgie, E.S, Yu, T, Heroux, A, Schatz, G.C, Vierstra, R.D, Orville, A.M.
Deposit date:2015-02-11
Release date:2015-05-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.
J.Am.Chem.Soc., 137, 2015
1B9I
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BU of 1b9i by Molmil
CRYSTAL STRUCTURE OF 3-AMINO-5-HYDROXYBENZOIC ACID (AHBA) SYNTHASE
Descriptor: 3-[O-PHOSPHONOPYRIDOXYL]--AMINO-BENZOIC ACID, PROTEIN (3-AMINO-5-HYDROXYBENZOIC ACID SYNTHASE)
Authors:Eads, J.C, Beeby, M, Scapin, G, Yu, T.-W, Floss, H.G.
Deposit date:1999-02-11
Release date:1999-08-13
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 3-amino-5-hydroxybenzoic acid (AHBA) synthase.
Biochemistry, 38, 1999
1B9H
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BU of 1b9h by Molmil
CRYSTAL STRUCTURE OF 3-AMINO-5-HYDROXYBENZOIC ACID (AHBA) SYNTHASE
Descriptor: PROTEIN (3-AMINO-5-HYDROXYBENZOIC ACID SYNTHASE), PYRIDOXAL-5'-PHOSPHATE
Authors:Eads, J.C, Beeby, M, Scapin, G, Yu, T.-W, Floss, H.G.
Deposit date:1999-02-11
Release date:1999-08-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of 3-amino-5-hydroxybenzoic acid (AHBA) synthase.
Biochemistry, 38, 1999
8XE8
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BU of 8xe8 by Molmil
Solution structure of ubiquitin-like domain (UBL) of human ZFAND1
Descriptor: AN1-type zinc finger protein 1
Authors:Lai, C.H, Ko, K.T, Fan, P.J, Yu, T.A, Chang, C.F, Hsu, S.T.D.
Deposit date:2023-12-11
Release date:2024-11-20
Method:SOLUTION NMR
Cite:Structural insight into the ZFAND1-p97 interaction involved in stress granule clearance.
J.Biol.Chem., 300, 2024
2MLK
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BU of 2mlk by Molmil
Three-dimensional structure of the C-terminal DNA-binding domain of RstA protein from Klebsiella pneumoniae
Descriptor: RstA
Authors:Fang, P, Chen, S, Cheng, Y, Chang, C, Yu, T, Huang, T.
Deposit date:2014-03-02
Release date:2014-07-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural dynamics of the two-component response regulator RstA in recognition of promoter DNA element.
Nucleic Acids Res., 42, 2014
2GCX
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BU of 2gcx by Molmil
Solution Structure of Ferrous Iron Transport Protein A (FeoA) of Klebsiella pneumoniae
Descriptor: Ferrous iron transport protein A
Authors:Hung, K.-W, Cheng, C.-C, Yu, T.-H, Wang, S.-H, Chang, C.-F, Tsai, S.-F, Huang, T.-H.
Deposit date:2006-03-14
Release date:2007-03-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of Ferrous Iron Transport Protein A (FeoA) of Klebsiella pneumoniae
To be Published
2MNU
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BU of 2mnu by Molmil
Backbone and side chain 1H, 13C, and 15N Chemical Shift Assignments for EDB and specific binding aptide
Descriptor: APT, EDB
Authors:Suh, J, Yu, T.
Deposit date:2014-04-10
Release date:2014-09-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:An Unusual Protein-Protein Interaction through Coupled Unfolding and Binding
Angew.Chem.Int.Ed.Engl., 53, 2014
3RA6
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BU of 3ra6 by Molmil
Crystal structure of T. celer L30e E62A/K46A variant
Descriptor: 50S ribosomal protein L30e
Authors:Chan, C.H, Yu, T.H, Wong, K.B.
Deposit date:2011-03-27
Release date:2011-10-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Stabilizing salt-bridge enhances protein thermostability by reducing the heat capacity change of unfolding
Plos One, 6, 2011
7Y39
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BU of 7y39 by Molmil
Ubiquitin-like domain of human ZFAND1
Descriptor: AN1-type zinc finger protein 1
Authors:Lai, C.H, Ko, K.T, Fan, P.J, Yu, T.A, Chang, C.F, Draczkowski, P, Hsu, S.T.D.
Deposit date:2022-06-10
Release date:2022-08-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural Insight into ZFAND1 and p97 Interaction
To Be Published
3OIQ
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BU of 3oiq by Molmil
Crystal structure of yeast telomere protein Cdc13 OB1 and the catalytic subunit of DNA polymerase alpha Pol1
Descriptor: Cell division control protein 13, DNA polymerase alpha catalytic subunit A
Authors:Sun, J, Yang, Y, Wan, K, Mao, N, Yu, T.Y, Lin, Y.C, DeZwaan, D.C, Freeman, B.C, Lin, J.J, Lue, N.F, Lei, M.
Deposit date:2010-08-19
Release date:2010-11-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase alpha.
Cell Res., 21, 2011
3OIP
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BU of 3oip by Molmil
Crystal structure of Yeast telomere protein Cdc13 OB1
Descriptor: Cell division control protein 13
Authors:Sun, J, Yang, Y, Wan, K, Mao, N, Yu, T.Y, Lin, Y.C, DeZwaan, D.C, Freeman, B.C, Lin, J.J, Lue, N.F, Lei, M.
Deposit date:2010-08-19
Release date:2010-11-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.504 Å)
Cite:Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase alpha.
Cell Res., 21, 2011

 

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