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PDB: 96 件
1V8X
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Crystal Structure of the Dioxygen-bound Heme Oxygenase from Corynebacterium diphtheriae
分子名称: Heme oxygenase, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Unno, M, Matsui, T, Chu, G.C, Couture, M, Yoshida, T, Rousseau, D.L, Olson, J.S, Ikeda-Saito, M.
登録日2004-01-15
公開日2004-05-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal Structure of the Dioxygen-bound Heme Oxygenase from Corynebacterium diphtheriae: IMPLICATIONS FOR HEME OXYGENASE FUNCTION.
J.Biol.Chem., 279, 2004
1KRE
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STRUCTURE OF P. CITRINUM ALPHA 1,2-MANNOSIDASE REVEALS THE BASIS FOR DIFFERENCES IN SPECIFICITY OF THE ER AND GOLGI CLASS I ENZYMES
分子名称: 1-DEOXYMANNOJIRIMYCIN, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Lobsanov, Y.D, Vallee, F, Imberty, A, Yoshida, T, Yip, P, Herscovics, A, Howell, P.L.
登録日2002-01-09
公開日2002-02-20
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of Penicillium citrinum alpha 1,2-mannosidase reveals the basis for differences in specificity of the endoplasmic reticulum and Golgi class I enzymes.
J.Biol.Chem., 277, 2002
1VA2
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Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 2)
分子名称: Transcription factor Sp1, ZINC ION
著者Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y.
登録日2004-02-07
公開日2005-02-08
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
1V6R
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Solution Structure of Endothelin-1 with its C-terminal Folding
分子名称: Endothelin-1
著者Takashima, H, Mimura, N, Ohkubo, T, Yoshida, T, Tamaoki, H, Kobayashi, Y.
登録日2003-12-03
公開日2004-03-16
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献Distributed Computing and NMR Constraint-Based High-Resolution Structure Determination: Applied for Bioactive Peptide Endothelin-1 To Determine C-Terminal Folding
J.Am.Chem.Soc., 126, 2004
1VA3
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Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 3)
分子名称: Transcription factor Sp1, ZINC ION
著者Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y.
登録日2004-02-07
公開日2005-02-08
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
1VA1
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Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 1)
分子名称: Transcription factor Sp1, ZINC ION
著者Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y.
登録日2004-02-07
公開日2005-02-08
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
3WCU
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The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: Deoxygenated form
分子名称: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
著者Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
登録日2013-06-01
公開日2014-06-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3WCV
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The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: CA bound form
分子名称: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
著者Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
登録日2013-06-01
公開日2014-06-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3WCW
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The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: MG bound form
分子名称: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
著者Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
登録日2013-06-01
公開日2014-06-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3WCT
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The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: Oxygenated form
分子名称: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
著者Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
登録日2013-06-01
公開日2014-06-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3WI0
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P453H/I471T mutant of PB2 middle domain from influenza virus A/Puerto Rico/8/34(H1N1)
分子名称: Polymerase basic protein 2
著者Tsurumura, T, Yoshida, T, Tsuge, H.
登録日2013-09-04
公開日2013-12-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.998 Å)
主引用文献Conformational Polymorphism of m7GTP in Crystal Structure of the PB2 Middle Domain from Human Influenza A Virus
Plos One, 8, 2013
3WJ4
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Crystal structure of PPARgamma ligand binding domain in complex with tributyltin
分子名称: Peroxisome proliferator-activated receptor gamma, tributylstannanyl
著者Harada, S, Hiromori, Y, Fukakusa, S, Kawahara, K, Nakamura, S, Noda, M, Uchiyama, S, Fukui, K, Nishikawa, J, Nagase, H, Kobayashi, Y, Ohkubo, T, Yoshida, T, Nakanishi, T.
登録日2013-10-04
公開日2014-10-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
3WJ5
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Crystal structure of PPARgamma ligand binding domain in complex with triphenyltin
分子名称: Peroxisome proliferator-activated receptor gamma, triphenylstannanyl
著者Harada, S, Hiromori, Y, Fukakusa, S, Kawahara, K, Nakamura, S, Noda, M, Uchiyama, S, Fukui, K, Nishikawa, J, Nagase, H, Kobayashi, Y, Ohkubo, T, Yoshida, T, Nakanishi, T.
登録日2013-10-04
公開日2014-10-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
3WI1
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P453H/I471T mutant of PB2 middle domain from influenza virus A/Puerto Rico/8/34(H1N1) with m7GTP
分子名称: 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, Polymerase basic protein 2
著者Tsurumura, T, Yoshida, T, Tsuge, H.
登録日2013-09-04
公開日2013-12-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.931 Å)
主引用文献Conformational Polymorphism of m7GTP in Crystal Structure of the PB2 Middle Domain from Human Influenza A Virus
Plos One, 8, 2013
3B2C
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Crystal structure of the collagen triple helix model [{PRO-HYP(R)-GLY}4-{HYP(S)-Pro-GLY}2-{PRO-HYP(R)-GLY}4]3
分子名称: Collagen-like peptide
著者Motooka, D, Kawahara, K, Nakamura, S, Doi, M, Nishi, Y, Nishiuchi, Y, Nakazawa, T, Yoshida, T, Ohkubo, T, Kobayashi, Y, Kang, Y.K, Uchiyama, S.
登録日2011-07-26
公開日2012-04-04
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-pro-gly units
Biopolymers, 98, 2011
3WQB
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Crystal structure of aeromonas sobria serine protease (ASP) and the chaperone (ORF2) complex
分子名称: CALCIUM ION, Extracellular serine protease, Open reading frame 2
著者Kobayashi, H, Yoshida, T, Miyakawa, T, Kato, R, Tashiro, M, Yamanaka, H, Tanokura, M, Tsuge, H.
登録日2014-01-24
公開日2015-03-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Structural Basis for Action of the External Chaperone for a Propeptide-deficient Serine Protease from Aeromonas sobria.
J.Biol.Chem., 290, 2015
3VJM
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Crystal structure of human depiptidyl peptidase IV (DPP-4) in complex with a prolylthiazolidine inhibitor #1
分子名称: 1,3-thiazolidin-3-yl[(2S,4S)-4-{4-[2-(trifluoromethyl)quinolin-4-yl]piperazin-1-yl}pyrrolidin-2-yl]methanone, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Akahoshi, F, Kishida, H, Miyaguchi, I, Yoshida, T, Ishii, S.
登録日2011-10-24
公開日2012-08-15
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Fused bicyclic heteroarylpiperazine-substituted l-prolylthiazolidines as highly potent DPP-4 inhibitors lacking the electrophilic nitrile group
Bioorg.Med.Chem., 20, 2012
3AFV
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Dye-decolorizing peroxidase (DyP) at 1.4 A resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, DyP, PROTOPORPHYRIN IX CONTAINING FE
著者Sugano, Y, Yoshida, T, Tsuge, H.
登録日2010-03-11
公開日2011-03-16
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue
Febs J., 278, 2011
3VXI
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Dye-decolorizing peroxidase (DyP) complex with ascorbic acid
分子名称: ASCORBIC ACID, DyP, PROTOPORPHYRIN IX CONTAINING FE
著者Sugano, Y, Yoshida, T, Tsuge, H.
登録日2012-09-14
公開日2012-11-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Dye-decolorizing peroxidase (DyP) complex with ascorbic acid
to be published
3VXJ
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Dye-decolorizing peroxidase (DyP) complex with 2,6-dimethoxyphenol
分子名称: 2,6-dimethoxyphenol, 2-acetamido-2-deoxy-beta-D-glucopyranose, DIMETHYL SULFOXIDE, ...
著者Sugano, Y, Yoshida, T, Tsuge, H.
登録日2012-09-14
公開日2012-11-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Dye-decolorizing peroxidase (DyP) complex with 2,6-dimethoxyphenol
to be published
3WFA
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Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase
分子名称: Alpha-glucosidase, SODIUM ION, {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID
著者Okuyama, M, Yoshida, T, Hondoh, H, Mori, H, Yao, M, Kimura, A.
登録日2013-07-18
公開日2014-07-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase
To be Published
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