Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 139 results

1RCK
DownloadVisualize
BU of 1rck by Molmil
THE THREE DIMENSIONAL STRUCTURE OF GUANINE-SPECIFIC RIBONUCLEASE F1 IN SOLUTION DETERMINED BY NMR SPECTROSCOPY AND DISTANCE GEOMETRY
Descriptor: RIBONUCLEASE F1
Authors:Nakai, T, Yoshikawa, W, Nakamura, H, Yoshida, H.
Deposit date:1994-08-08
Release date:1994-11-30
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:The three-dimensional structure of guanine-specific ribonuclease F1 in solution determined by NMR spectroscopy and distance geometry.
Eur.J.Biochem., 208, 1992
1RCL
DownloadVisualize
BU of 1rcl by Molmil
THE THREE DIMENSIONAL STRUCTURE OF GUANINE-SPECIFIC RIBONUCLEASE F1 IN SOLUTION DETERMINED BY NMR SPECTROSCOPY AND DISTANCE GEOMETRY
Descriptor: RIBONUCLEASE F1
Authors:Nakai, T, Yoshikawa, W, Nakamura, H, Yoshida, H.
Deposit date:1994-08-08
Release date:1994-11-30
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:The three-dimensional structure of guanine-specific ribonuclease F1 in solution determined by NMR spectroscopy and distance geometry.
Eur.J.Biochem., 208, 1992
4EN7
DownloadVisualize
BU of 4en7 by Molmil
Crystal structure of HA70 (HA3) subcomponent of Clostridium botulinum type C progenitor toxin in complex with alpha 2-3-sialyllactosamine
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, Hemagglutinin components HA-22/23/53, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Yamashita, S, Yoshida, H, Tonozuka, T, Nishikawa, A, Kamitori, S.
Deposit date:2012-04-12
Release date:2012-06-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Carbohydrate recognition mechanism of HA70 from Clostridium botulinum deduced from X-ray structures in complexes with sialylated oligosaccharides
Febs Lett., 586, 2012
2EIS
DownloadVisualize
BU of 2eis by Molmil
X-ray structure of acyl-CoA hydrolase-like protein, TT1379, from Thermus thermophilus HB8
Descriptor: COENZYME A, Hypothetical protein TTHB207
Authors:Kamitori, S, Yoshida, H, Satoh, S, Iino, H, Ebihara, A, Chen, L, Fu, Z.-Q, Chrzas, J, Wang, B.-C, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-13
Release date:2008-03-18
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray structure of acyl-CoA hydrolase-like protein, TT1379, from Thermus thermophilus HB8
To be Published
7FCI
DownloadVisualize
BU of 7fci by Molmil
human NTCP in complex with YN69083 Fab
Descriptor: Fab Heavy chain, Fab Light chain, Sodium/bile acid cotransporter
Authors:Park, J.H, Iwamoto, M, Yun, J.H, Uchikubo-Kamo, T, Son, D, Jin, Z, Yoshida, H, Ohki, M, Ishimoto, N, Mizutani, K, Oshima, M, Muramatsu, M, Wakita, T, Shirouzu, M, Liu, K, Uemura, T, Nomura, N, Iwata, S, Watashi, K, Tame, J.R.H, Nishizawa, T, Lee, W, Park, S.Y.
Deposit date:2021-07-14
Release date:2022-05-25
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insights into the HBV receptor and bile acid transporter NTCP.
Nature, 606, 2022
5ZQT
DownloadVisualize
BU of 5zqt by Molmil
Crystal structure of Oryza sativa hexokinase 6
Descriptor: Hexokinase-6, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Matsudaira, K, Mochizuki, S, Yoshida, H, Kamitori, S, Akimitsu, K.
Deposit date:2018-04-20
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Crystal structure of Oryza sativa hexokinase 6
To Be Published
2D0F
DownloadVisualize
BU of 2d0f by Molmil
Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N complexed with P2, a pullulan model oligosaccharide
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
Deposit date:2005-08-02
Release date:2006-07-11
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages
Febs J., 272, 2005
2D0H
DownloadVisualize
BU of 2d0h by Molmil
Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P2, a pullulan model oligosaccharide
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
Deposit date:2005-08-02
Release date:2006-07-11
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages
Febs J., 272, 2005
2D0G
DownloadVisualize
BU of 2d0g by Molmil
Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P5, a pullulan model oligosaccharide
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose, ...
Authors:Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
Deposit date:2005-08-02
Release date:2006-07-11
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages
Febs J., 272, 2005
2D2O
DownloadVisualize
BU of 2d2o by Molmil
Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft
Descriptor: CALCIUM ION, Neopullulanase 2, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Ohtaki, A, Mizuno, M, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
Deposit date:2005-09-13
Release date:2006-08-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft
Carbohydr.Res., 341, 2006
2ECE
DownloadVisualize
BU of 2ece by Molmil
X-ray structure of hypothetical selenium-binding protein from Sulfolobus tokodaii, ST0059
Descriptor: 462aa long hypothetical selenium-binding protein
Authors:Yamada, M, Yoshida, H, Kuramitsu, S, Kamitori, S.
Deposit date:2007-02-13
Release date:2008-01-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure of hypothetical selenium-binding protein from Sulfolobus tokodaii, ST0059
To be Published
2Z8G
DownloadVisualize
BU of 2z8g by Molmil
Aspergillus niger ATCC9642 isopullulanase complexed with isopanose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose
Authors:Mizuno, M, Koide, A, Yamamura, A, Akeboshi, H, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
Deposit date:2007-09-05
Release date:2007-12-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49
J.Mol.Biol., 376, 2008
3VUS
DownloadVisualize
BU of 3vus by Molmil
Escherichia coli PgaB N-terminal domain
Descriptor: ACETATE ION, MERCURY (II) ION, Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase, ...
Authors:Nishiyama, T, Noguchi, H, Yoshida, H, Park, S.-Y, Tame, J.R.H.
Deposit date:2012-07-05
Release date:2012-11-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The structure of the deacetylase domain of Escherichia coli PgaB, an enzyme required for biofilm formation: a circularly permuted member of the carbohydrate esterase 4 family
Acta Crystallogr.,Sect.D, 69, 2013
3B4X
DownloadVisualize
BU of 3b4x by Molmil
Crystal Structure Analysis of Sulfolobus tokodaii strain7 cytochrom P450
Descriptor: 367aa long hypothetical cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kamitori, S, Yoshida, H, Ohtaki, A, Nakamura, N.
Deposit date:2007-10-24
Release date:2008-11-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Monooxygenation by Thermophilic Cytochrome P450 via Direct Electron Transfer from NADH without Redox Partner
To be Published
3WUC
DownloadVisualize
BU of 3wuc by Molmil
X-ray crystal structure of Xenopus laevis galectin-Va
Descriptor: Galectin, MALONIC ACID, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
Authors:Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T.
Deposit date:2014-04-23
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1.
Glycobiology, 25, 2015
3WUD
DownloadVisualize
BU of 3wud by Molmil
X-ray crystal structure of Xenopus laevis galectin-Ib
Descriptor: Galectin, SULFATE ION, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
Authors:Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T.
Deposit date:2014-04-23
Release date:2015-04-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1.
Glycobiology, 25, 2015
2ZYK
DownloadVisualize
BU of 2zyk by Molmil
Crystal structure of cyclo/maltodextrin-binding protein complexed with gamma-cyclodextrin
Descriptor: Cyclooctakis-(1-4)-(alpha-D-glucopyranose), Solute-binding protein
Authors:Tonozuka, T, Sogawa, A, Yamada, M, Matsumoto, N, Yoshida, H, Kamitori, S, Ichikawa, K, Mizuno, M, Nishikawa, A, Sakano, Y.
Deposit date:2009-01-26
Release date:2009-02-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for cyclodextrin recognition by Thermoactinomyces vulgaris cyclo/maltodextrin-binding protein
Febs J., 274, 2007
2ZKN
DownloadVisualize
BU of 2zkn by Molmil
X-ray structure of mutant galectin-1/lactose complex
Descriptor: Galectin-1, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Abe, A, Yoshida, H, Kamitori, S.
Deposit date:2008-03-26
Release date:2008-09-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Functional and structural bases of a cysteine-less mutant as a long-lasting substitute for galectin-1
Glycobiology, 18, 2008
3VKN
DownloadVisualize
BU of 3vkn by Molmil
Galectin-8 N-terminal domain in free form
Descriptor: CHLORIDE ION, Galectin-8
Authors:Kamitori, S, Yoshida, H.
Deposit date:2011-11-18
Release date:2012-09-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
3VKL
DownloadVisualize
BU of 3vkl by Molmil
Protease-resistant mutant form of human Galectin-8 in complex with two lactose molecules
Descriptor: 1,2-ETHANEDIOL, Galectin-8, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Kamitori, S, Yoshida, H.
Deposit date:2011-11-18
Release date:2012-09-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
3VKO
DownloadVisualize
BU of 3vko by Molmil
Galectin-8 N-terminal domain in complex with sialyllactosamine
Descriptor: CHLORIDE ION, Galectin-8, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Kamitori, S, Yoshida, H.
Deposit date:2011-11-18
Release date:2012-09-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
3W7T
DownloadVisualize
BU of 3w7t by Molmil
Escherichia coli K12 YgjK complexed with mannose
Descriptor: CALCIUM ION, MAGNESIUM ION, Uncharacterized protein YgjK, ...
Authors:Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
Deposit date:2013-03-06
Release date:2013-04-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
J.Mol.Biol., 381, 2008
3WW3
DownloadVisualize
BU of 3ww3 by Molmil
X-ray structures of Cellulomonas parahominis L-ribose isomerase with no ligand
Descriptor: L-ribose isomerase, MANGANESE (II) ION
Authors:Terami, Y, Yoshida, H, Takata, G, Kamitori, S.
Deposit date:2014-06-13
Release date:2015-04-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway.
Appl.Microbiol.Biotechnol., 99, 2015
3WW1
DownloadVisualize
BU of 3ww1 by Molmil
X-ray structure of Cellulomonas parahominis L-ribose isomerase with L-ribose
Descriptor: L-ribose, L-ribose isomerase, MANGANESE (II) ION, ...
Authors:Terami, Y, Yoshida, H, Takata, G, Kamitori, S.
Deposit date:2014-06-13
Release date:2015-04-29
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway.
Appl.Microbiol.Biotechnol., 99, 2015
3W7S
DownloadVisualize
BU of 3w7s by Molmil
Escherichia coli K12 YgjK complexed with glucose
Descriptor: CALCIUM ION, Uncharacterized protein YgjK, alpha-D-glucopyranose
Authors:Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
Deposit date:2013-03-06
Release date:2013-04-03
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
J.Mol.Biol., 381, 2008

227561

PDB entries from 2024-11-20

PDB statisticsPDBj update infoContact PDBjnumon