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PDB: 2430 件

1UJR
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Solution structure of WWE domain in BAB28015
分子名称: hypothetical protein AK012080
著者He, F, Muto, Y, Hamana, H, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Kobayashi, N, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nagayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-08-11
公開日2004-10-05
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of WWE domain in BAB28015
To be Published
1UDS
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Crystal structure of the tRNA processing enzyme RNase PH R126A mutant from Aquifex aeolicus
分子名称: PHOSPHATE ION, Ribonuclease PH, SULFATE ION
著者Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-02
公開日2003-09-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1RRB
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BU of 1rrb by Molmil
THE RAS-BINDING DOMAIN OF RAF-1 FROM RAT, NMR, 1 STRUCTURE
分子名称: RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE
著者Terada, T, Ito, Y, Shirouzu, M, Tateno, M, Hashimoto, K, Kigawa, T, Ebisuzaki, T, Takio, K, Shibata, T, Yokoyama, S, Smith, B.O, Laue, E.D, Cooper, J.A, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1998-03-26
公開日1999-03-30
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins.
J.Mol.Biol., 286, 1999
1UK5
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BU of 1uk5 by Molmil
Solution structure of the Murine BAG domain of Bcl2-associated athanogene 3
分子名称: BAG-family molecular chaperone regulator-3
著者Hatta, R, Yoshida, M, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-08-19
公開日2004-02-19
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange
Structure, 18, 2010
1UM1
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BU of 1um1 by Molmil
Solution Structure of RSGI RUH-007, PDZ domain in Human cDNA
分子名称: KIAA1849 protein
著者Doi-Katayama, Y, Hayashi, F, Hirota, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-09-22
公開日2004-03-22
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of RSGI RUH-007, a PDZ Domain in Human cDNA
To be Published
1V80
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Solution structures of ubiquitin at 30 bar and 3 kbar
分子名称: Ubiquitin/60s ribosomal protein L40 fusion
著者Kitahara, R, Yokoyama, S, Akasaka, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-12-27
公開日2005-02-15
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR snapshots of a fluctuating protein structure: ubiquitin at 30 bar-3 kbar.
J.Mol.Biol., 347, 2005
1VA9
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BU of 1va9 by Molmil
Solution structure of the second FNIII domain of DSCAML1 protein
分子名称: Down syndrome cell adhesion molecule like-protein 1b
著者Qin, X.-R, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-02-13
公開日2005-02-22
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the second FNIII domain of DSCAML1 protein
TO BE PUBLISHED
1UL4
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BU of 1ul4 by Molmil
Solution structure of the DNA-binding domain of squamosa promoter binding protein-like 4
分子名称: ZINC ION, squamosa promoter binding protein-like 4
著者Yamasaki, K, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-09-09
公開日2004-03-09
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors.
J.Mol.Biol., 337, 2004
1TJL
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BU of 1tjl by Molmil
Crystal structure of transcription factor DksA from E. coli
分子名称: DnaK suppressor protein, ZINC ION
著者Perederina, A, Svetlov, V, Vassylyeva, M.N, Artsimovitch, I, Yokoyama, S, Vassylyev, D.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-06-06
公開日2004-09-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Regulation through the secondary channel--structural framework for ppGpp-DksA synergism during transcription
Cell(Cambridge,Mass.), 118, 2004
1V33
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Crystal structure of DNA primase from Pyrococcus horikoshii
分子名称: DNA primase small subunit, PHOSPHATE ION, ZINC ION
著者Ito, N, Nureki, O, Shirouzu, M, Yokoyama, S, Hanaoka, F, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-10-25
公開日2004-03-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the Pyrococcus horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesis.
Genes Cells, 8, 2003
1UM7
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Solution structure of the third PDZ domain of synapse-associated protein 102
分子名称: synapse-associated protein 102
著者Qin, X.-R, Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-09-24
公開日2004-03-24
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the third PDZ domain of synapse-associated protein 102
To be published
1V34
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Crystal structure of Pyrococcus horikoshii DNA primase-UTP complex
分子名称: DNA primase small subunit, URIDINE 5'-TRIPHOSPHATE, ZINC ION
著者Ito, N, Nureki, O, Shirouzu, M, Yokoyama, S, Hanaoka, F, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-10-25
公開日2004-03-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of the Pyrococcus horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesis.
Genes Cells, 8, 2003
1VA8
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BU of 1va8 by Molmil
Solution structure of the PDZ domain of Pals1 protein
分子名称: MAGUK p55 subfamily member 5
著者Qin, X.-R, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-02-13
公開日2005-02-22
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the PDZ domain of Pals1 protein
To be Published
1VB7
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Solution structure of the PDZ domain of PDZ and LIM domain 2
分子名称: PDZ and LIM domain 2
著者Hatta, R, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-02-24
公開日2004-08-30
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the PDZ domain of PDZ and LIM domain 2
To be Published
1V9X
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Solution structure of the first Zn-finger domain of poly(ADP-ribose) polymerase-1
分子名称: ZINC ION, poly (ADP-ribose) polymerase
著者Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-02-04
公開日2005-02-22
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the first Zn-finger domain of poly(ADP-ribose) polymerase-1
To be Published
1V3F
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Solution structure of the DEP domain of mouse pleckstrin2
分子名称: Pleckstrin 2
著者Inoue, K, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-10-31
公開日2004-04-30
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the DEP domain of mouse pleckstrin2
To be Published
1V6Z
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BU of 1v6z by Molmil
Crystal structure of TT1573 from Thermus thermophilus
分子名称: hypothetical protein TTHA0657
著者Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-12-05
公開日2004-12-14
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of TT1573 from Thermus thermophilus
To be Published
1VG5
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Solution Structure of RSGI RUH-014, a UBA domain from Arabidopsis cDNA
分子名称: rhomboid family protein
著者Onuki, H, Doi-Katayama, Y, Hayashi, F, Hirota, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-04-23
公開日2004-10-23
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of RSGI RUH-014, a UBA domain from Arabidopsis thaliana cDNA
To be Published
1WFS
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BU of 1wfs by Molmil
Solution Structure of Glia Maturation Factor-gamma from Mus Musculus
分子名称: Glia maturation factor gamma
著者Goroncy, A.K, Kigawa, T, Koshiba, S, Kobayashi, N, Tochio, N, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-26
公開日2004-11-26
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR solution structures of actin depolymerizing factor homology domains.
Protein Sci., 18, 2009
1WV9
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Crystal Structure of Rhodanese Homolog TT1651 from an Extremely Thermophilic Bacterium Thermus thermophilus HB8
分子名称: Rhodanese Homolog TT1651
著者Mizohata, E, Hattori, M, Tatsuguchi, A, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-12-12
公開日2005-06-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8
Proteins, 64, 2006
1WGU
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Solution Structure of the C-terminal Phosphotyrosine Interaction Domain of APBB2 from Mouse
分子名称: amyloid beta (A4) precursor protein-binding, family B, member 2
著者Li, H, Hayashi, F, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode
J.Biol.Chem., 283, 2008
3VR2
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Crystal structure of nucleotide-free A3B3 complex from Enterococcus hirae V-ATPase [eA3B3]
分子名称: V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B
著者Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
登録日2012-04-03
公開日2013-01-16
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
1X56
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Crystal structure of asparaginyl-tRNA synthetase from Pyrococcus horikoshii
分子名称: Asparaginyl-tRNA synthetase
著者Iwasaki, W, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-15
公開日2006-05-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structural Basis of the Water-assisted Asparagine Recognition by Asparaginyl-tRNA Synthetase.
J.Mol.Biol., 360, 2006
3VR4
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Crystal structure of Enterococcus hirae V1-ATPase [eV1]
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GLYCEROL, ...
著者Saijo, S, Arai, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
登録日2012-04-03
公開日2013-01-16
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.172 Å)
主引用文献Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR6
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Crystal structure of AMP-PNP bound Enterococcus hirae V1-ATPase [bV1]
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ...
著者Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T.
登録日2012-04-03
公開日2013-01-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013

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