Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 2430 件
4YVK
DownloadVisualize
BU of 4yvk by Molmil
Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36C)
分子名称: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
著者Yoshida, K, Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.002 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVI
DownloadVisualize
BU of 4yvi by Molmil
Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA
分子名称: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
著者Yoshida, K, Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
1VDY
DownloadVisualize
BU of 1vdy by Molmil
NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana
分子名称: hypothetical protein (RAFL09-17-B18)
著者Lopez-Mendez, B, Pantoja-Uceda, D, Tomizawa, T, Koshiba, S, Kigawa, T, Shirouzu, M, Terada, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Seki, M, Shinozaki, K, Yokoyama, S, Guntert, P, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-25
公開日2005-05-03
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the hypothetical ENTH-VHS domain AT3G16270 from arabidopsis thaliana
To be Published
3GH4
DownloadVisualize
BU of 3gh4 by Molmil
Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12
分子名称: ACETIC ACID, SULFATE ION, beta-hexosaminidase
著者Sumida, T, Ishii, R, Yanagisawa, T, Yokoyama, S, Ito, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-03-03
公開日2009-07-07
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular cloning and crystal structural analysis of a novel beta-N-acetylhexosaminidase from Paenibacillus sp. TS12 capable of degrading glycosphingolipids
J.Mol.Biol., 392, 2009
1V5W
DownloadVisualize
BU of 1v5w by Molmil
Crystal structure of the human Dmc1 protein
分子名称: Meiotic recombination protein DMC1/LIM15 homolog
著者Kinebuchi, T, Kagawa, W, Enomoto, R, Ikawa, S, Shibata, T, Kurumizaka, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-11-26
公開日2004-05-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein dmc1
Mol.Cell, 14, 2004
3GH5
DownloadVisualize
BU of 3gh5 by Molmil
Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with GlcNAc
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, beta-hexosaminidase
著者Sumida, T, Ishii, R, Yanagisawa, T, Yokoyama, S, Ito, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-03-03
公開日2009-07-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular cloning and crystal structural analysis of a novel beta-N-acetylhexosaminidase from Paenibacillus sp. TS12 capable of degrading glycosphingolipids
J.Mol.Biol., 392, 2009
3GFI
DownloadVisualize
BU of 3gfi by Molmil
Crystal structure of ST1710 complexed with its promoter DNA
分子名称: 146aa long hypothetical transcriptional regulator, 5'-D(*TP*AP*AP*CP*AP*AP*TP*AP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*GP*CP*TP*AP*TP*TP*GP*T)-3'
著者Kumarevel, T, Tanaka, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-02-26
公開日2009-08-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
Nucleic Acids Res., 37, 2009
3GH7
DownloadVisualize
BU of 3gh7 by Molmil
Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with GalNAc
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, SULFATE ION, beta-hexosaminidase
著者Sumida, T, Ishii, R, Yanagisawa, T, Yokoyama, S, Ito, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-03-03
公開日2009-07-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular cloning and crystal structural analysis of a novel beta-N-acetylhexosaminidase from Paenibacillus sp. TS12 capable of degrading glycosphingolipids
J.Mol.Biol., 392, 2009
1J1H
DownloadVisualize
BU of 1j1h by Molmil
Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
分子名称: Small Protein B
著者Someya, T, Nameki, N, Hosoi, H, Suzuki, S, Hatanaka, H, Fujii, M, Terada, T, Shirouzu, M, Inoue, Y, Shibata, T, Kuramitsu, S, Yokoyama, S, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-12-04
公開日2003-02-11
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
FEBS Lett., 535, 2003
1IQ8
DownloadVisualize
BU of 1iq8 by Molmil
Crystal Structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii
分子名称: ARCHAEOSINE TRNA-GUANINE TRANSGLYCOSYLASE, MAGNESIUM ION, ZINC ION
著者Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-07-09
公開日2002-05-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1J3M
DownloadVisualize
BU of 1j3m by Molmil
Crystal structure of the conserved hypothetical protein TT1751 from Thermus thermophilus HB8
分子名称: SULFITE ION, the conserved hypothetical protein TT1751
著者Kishishita, S, Terada, T, Shirouzu, M, Kuramitsu, S, Park, S.-Y, Tame, R.H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-02-05
公開日2004-05-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8
Proteins, 57, 2004
1IYW
DownloadVisualize
BU of 1iyw by Molmil
Preliminary Structure of Thermus thermophilus Ligand-Free Valyl-tRNA Synthetase
分子名称: Valyl-tRNA Synthetase
著者Fukai, S, Nureki, O, Sekine, S, Shimada, A, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-09-10
公開日2003-06-17
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase
RNA, 9, 2003
1IT7
DownloadVisualize
BU of 1it7 by Molmil
Crystal structure of archaeosine tRNA-guanine transglycosylase complexed with guanine
分子名称: Archaeosine tRNA-guanine transglycosylase, GUANINE, MAGNESIUM ION, ...
著者Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-01-11
公開日2002-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
1IT8
DownloadVisualize
BU of 1it8 by Molmil
Crystal structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii complexed with archaeosine precursor, preQ0
分子名称: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, MAGNESIUM ION, ZINC ION, ...
著者Ishitani, R, Nureki, O, Fukai, S, Kijimoto, T, Nameki, N, Watanabe, M, Kondo, H, Sekine, M, Okada, N, Nishimura, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-01-11
公開日2002-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of archaeosine tRNA-guanine transglycosylase.
J.Mol.Biol., 318, 2002
2OMD
DownloadVisualize
BU of 2omd by Molmil
Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, FORMIC ACID, ...
著者Jeyakanthan, J, Kanaujia, S.P, Vasuki Ranjani, C, Sekar, K, Agari, Y, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-01-22
公開日2008-01-29
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of molybdopterin converting factor subunit 2 (aq_2181) from aquifex aeolicus VF5
To be Published
4ZU9
DownloadVisualize
BU of 4zu9 by Molmil
Crystal structure of bacterial selenocysteine-specific elongation factor EF-Sec
分子名称: CYSTEINE, Elongation factor SelB, MAGNESIUM ION, ...
著者Itoh, Y, Sekine, S, Yokoyama, S.
登録日2015-05-15
公開日2015-09-23
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (3.191 Å)
主引用文献Crystal structure of the full-length bacterial selenocysteine-specific elongation factor SelB
Nucleic Acids Res., 43, 2015
2PCJ
DownloadVisualize
BU of 2pcj by Molmil
Crystal structure of ABC transporter (aq_297) From Aquifex Aeolicus VF5
分子名称: Lipoprotein-releasing system ATP-binding protein lolD, SULFITE ION
著者Jeyakanthan, J, Kanaujia, S.P, Vasuki Ranjani, C, Sekar, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-30
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of ABC transporter (aq_297) From Aquifex Aeolicus VF5
To be Published
2PBY
DownloadVisualize
BU of 2pby by Molmil
Probable Glutaminase from Geobacillus kaustophilus HTA426
分子名称: Glutaminase
著者Dillard, B.D, Ebihara, A, Shinkai, A, Kuramitsu, S, Yokoyama, S, Rose, J.P, Wang, B.-C, RIKEN Structural Genomics/Proteomics Initiative (RSGI), Southeast Collaboratory for Structural Genomics (SECSG)
登録日2007-03-29
公開日2007-06-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Glutaminase from Geobacillus kaustophilus HTA426
To be Published
2P91
DownloadVisualize
BU of 2p91 by Molmil
Crystal structure of Enoyl-[acyl-carrier-protein] reductase (NADH) from Aquifex aeolicus VF5
分子名称: Enoyl-[acyl-carrier-protein] reductase [NADH]
著者Chen, L, Li, Y, Ebihara, A, Shinkai, A, Kuramitsu, S, Yokoyama, S, Zhao, M, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-23
公開日2007-04-24
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of Enoyl-[acyl-carrier-protein] reductase (NADH) from Aquifex aeolicus VF5
To be Published
2EF1
DownloadVisualize
BU of 2ef1 by Molmil
Crystal structure of the extracellular domain of human CD38
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADP-ribosyl cyclase 1
著者Kukimoto-Niino, M, Nureki, O, Murayama, K, Shirouzu, M, Katada, T, Hara-Yokoyama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-20
公開日2007-02-27
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of the extracellular domain of human CD38
To be Published
2EG9
DownloadVisualize
BU of 2eg9 by Molmil
Crystal structure of the truncated extracellular domain of mouse CD38
分子名称: ADP-ribosyl cyclase 1
著者Kukimoto-Niino, M, Mishima, C, Wakiyama, M, Terada, T, Shirouzu, M, Hara-Yokoyama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-28
公開日2008-03-11
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the truncated extracellular domain of mouse CD38
To be Published
2PBR
DownloadVisualize
BU of 2pbr by Molmil
Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5
分子名称: SULFATE ION, Thymidylate kinase
著者Jeyakanthan, J, Kanaujia, S.P, Vasuki Ranjani, C, Sekar, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-29
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5
To be Published
2PCN
DownloadVisualize
BU of 2pcn by Molmil
Crystal structure of S-adenosylmethionine: 2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426
分子名称: ACETATE ION, S-adenosylmethionine:2-demethylmenaquinone methyltransferase
著者Jeyakanthan, J, Kanaujia, S.P, Rafi, Z.A, Sekar, K, Agari, Y, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-30
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of S-adenosylmethionine:2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426
To be Published
2P5U
DownloadVisualize
BU of 2p5u by Molmil
Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, UDP-glucose 4-epimerase
著者Fu, Z.-Q, Chen, L, Ebihara, A, Shinkai, A, Kuramitsu, S, Yokoyama, S, Zhao, M, Dillard, B, Chrzas, J, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-16
公開日2007-04-17
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD
To be Published
2P9M
DownloadVisualize
BU of 2p9m by Molmil
Crystal structure of conserved hypothetical protein MJ0922 from Methanocaldococcus jannaschii DSM 2661
分子名称: Hypothetical protein MJ0922
著者Zhao, M, Ebihara, A, Shinkai, A, Kuramitsu, S, Yokoyama, S, Zhu, J, Swindell II, J.T, Chen, L, Fu, Z.-Q, Charz, J, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-26
公開日2007-07-03
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Crystal structure of conserved hypothetical protein MJ0922 from Methanocaldococcus jannaschii DSM 2661
To be Published

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon