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PDB: 2430 件

2RQR
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The solution structure of human DOCK2 SH3 domain - ELMO1 peptide chimera complex
分子名称: Engulfment and cell motility protein 1,Dedicator of cytokinesis protein 2
著者Yokoyama, S, Tochio, N, Koshiba, S, Kigawa, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-10-21
公開日2010-10-27
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms.
Proc.Natl.Acad.Sci.USA, 109, 2012
2DVW
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Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
分子名称: 26S protease regulatory subunit 6B, 26S proteasome non-ATPase regulatory subunit 10
著者Yokoyama, S, Padmanabhan, B, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-01
公開日2007-03-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
Structure, 15, 2007
2DZN
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Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
分子名称: 26S protease regulatory subunit 6B homolog, Probable 26S proteasome regulatory subunit p28
著者Yokoyama, S, Padmanabhan, B, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-29
公開日2007-07-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the recognition between the regulatory particles Nas6 and Rpt3 of the yeast 26S proteasome
Biochem.Biophys.Res.Commun., 359, 2007
1MG8
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NMR structure of ubiquitin-like domain in murine Parkin
分子名称: Parkin
著者Tashiro, M, Okubo, S, Shimotakahara, S, Hatanaka, H, Yasuda, H, Kainosho, M, Yokoyama, S, Shindo, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-08-15
公開日2003-04-08
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献NMR structure of ubiquitin-like domain in PARKIN: Gene product of familial Parkinson's disease.
J.Biomol.NMR, 25, 2003
2KUQ
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Solution structure of the chimera of the PTB domain of SNT-2 and 19-residue peptide (aa 1571-1589) of HALK
分子名称: Fibroblast growth factor receptor substrate 3,LINKER,ALK tyrosine kinase receptor
著者Li, H, Koshiba, S, Tomizawa, T, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-02-24
公開日2010-05-26
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for the recognition of nucleophosmin-anaplastic lymphoma kinase oncoprotein by the phosphotyrosine binding domain of Suc1-associated neurotrophic factor-induced tyrosine-phosphorylated target-2
J.Struct.Funct.Genom., 11, 2010
8KCQ
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Solution structures of the N-terminal divergent caplonin homology (NN-CH) domains of human intraflagellar transport protein 54
分子名称: TRAF3-interacting protein 1
著者Dang, W, Kuwasako, K, He, F, Takahashi, M, Tsuda, K, Nagata, T, Tanaka, A, Kobayashi, N, Kigawa, T, Guentert, P, Shirouzu, M, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2023-08-08
公開日2024-05-22
実験手法SOLUTION NMR
主引用文献1 H, 13 C, and 15 N resonance assignments and solution structure of the N-terminal divergent calponin homology (NN-CH) domain of human intraflagellar transport protein 54.
Biomol.Nmr Assign., 18, 2024
2LEX
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Complex of the C-terminal WRKY domain of AtWRKY4 and a W-box DNA
分子名称: DNA (5'-D(*CP*G*CP*CP*TP*TP*TP*GP*AP*CP*CP*AP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*C*TP*GP*GP*TP*CP*AP*AP*AP*GP*GP*CP*G)-3'), Probable WRKY transcription factor 4, ...
著者Yamasaki, K, Kigawa, T, Watanabe, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-06-24
公開日2012-01-18
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for sequence-spscific DNA recognition by an Arabidopsis WRKY transcription factor
J.Biol.Chem., 2012
3UG2
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Crystal structure of the mutated EGFR kinase domain (G719S/T790M) in complex with gefitinib
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Epidermal growth factor receptor, Gefitinib
著者Parker, L.J, Handa, N, Yoshikawa, S, Kukimoto-Niino, M, Shirouzu, M, Yokoyama, S.
登録日2011-11-02
公開日2012-03-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor
Oncogene, 32, 2013
1VDY
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NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana
分子名称: hypothetical protein (RAFL09-17-B18)
著者Lopez-Mendez, B, Pantoja-Uceda, D, Tomizawa, T, Koshiba, S, Kigawa, T, Shirouzu, M, Terada, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Seki, M, Shinozaki, K, Yokoyama, S, Guntert, P, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-25
公開日2005-05-03
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the hypothetical ENTH-VHS domain AT3G16270 from arabidopsis thaliana
To be Published
3UG1
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Crystal structure of the mutated EGFR kinase domain (G719S/T790M) in the apo form
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Epidermal growth factor receptor
著者Parker, L.J, Handa, N, Yoshikawa, S, Kukimoto-Niino, M, Shirouzu, M, Yokoyama, S.
登録日2011-11-02
公開日2012-03-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural basis for the altered drug sensitivities of non-small cell lung cancer-associated mutants of human epidermal growth factor receptor
Oncogene, 32, 2013
3CM0
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Crystal structure of adenylate kinase from Thermus thermophilus HB8
分子名称: Adenylate kinase
著者Nakagawa, N, Kondo, N, Masui, R, Matsuda, Z, Iwamoto, I, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-03-20
公開日2008-09-23
最終更新日2024-08-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of adenylate kinase from Thermus thermophilus HB8.
To be Published
3BOY
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Crystal structure of the HutP antitermination complex bound to the HUT mRNA
分子名称: 5'-R(*UP*UP*UP*AP*GP*UP*UP*UP*UP*UP*AP*GP*UP*UP*UP*UP*UP*AP*GP*UP*UP*U)-3', HISTIDINE, Hut operon positive regulatory protein, ...
著者Kumarevel, T.S, Balasundaresan, D, Jeyakanthan, J, Shinkai, A, Yokoyama, S, Kumar, P.K.R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-12-18
公開日2008-01-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of HutP complexed with the 55-mer RNA
To be Published
1VGG
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Crystal Structure of the Conserved Hypothetical Protein TTHA1091 from Thermus Thermophilus HB8
分子名称: Conserved Hypothetical Protein TT1634 (TTHA1091)
著者Satoh, S, Yao, M, Kousumi, Y, Ebihara, A, Matsumoto, K, Okamoto, A, Tanaka, I, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-04-26
公開日2004-10-26
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal Structure of the Conserved Hypothetical Protein TT1634 from Thermus Thermophilus HB8
To be Published
4YVI
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Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA
分子名称: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
著者Yoshida, K, Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVK
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Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36C)
分子名称: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
著者Yoshida, K, Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.002 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVG
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Crystal Structure of H. influenzae TrmD in complex with AdoMet
分子名称: S-ADENOSYLMETHIONINE, tRNA (guanine-N(1)-)-methyltransferase
著者Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.549 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YVJ
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Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36U)
分子名称: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase
著者Yoshida, K, Ito, T, Yokoyama, S.
登録日2015-03-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD.
Proc.Natl.Acad.Sci.USA, 112, 2015
3UFZ
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BU of 3ufz by Molmil
Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code
分子名称: Green fluorescent protein
著者Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D.
登録日2011-11-02
公開日2012-10-17
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic Acids Res., 40, 2012
1VFJ
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Crystal structure of TT1020 from Thermus thermophilus HB8
分子名称: nitrogen regulatory protein p-II
著者Wang, H, Sakai, H, Takemoto-Hori, C, Kaminishi, T, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-04-15
公開日2005-01-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8
J.STRUCT.BIOL., 149, 2005
1VS3
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Crystal Structure of the tRNA Pseudouridine Synthase TruA From Thermus thermophilus HB8
分子名称: tRNA pseudouridine synthase A
著者Dong, X, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-06-28
公開日2006-12-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of tRNA pseudouridine synthase TruA from Thermus thermophilus HB8.
Rna Biol., 3, 2006
3UMW
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Crystal structure of Pim1 kinase in complex with inhibitor (Z)-2-[(1H-indazol-3-yl)methylene]-6-methoxy-7-(piperazin-1-ylmethyl)benzofuran-3(2H)-one
分子名称: (2Z)-2-(1H-indazol-3-ylmethylidene)-6-methoxy-7-(piperazin-1-ylmethyl)-1-benzofuran-3(2H)-one, GLYCEROL, Proto-oncogene serine/threonine-protein kinase pim-1, ...
著者Parker, L.J, Handa, N, Yokoyama, S.
登録日2011-11-14
公開日2012-10-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Rational evolution of a novel type of potent and selective proviral integration site in Moloney murine leukemia virus kinase 1 (PIM1) inhibitor from a screening-hit compound.
J.Med.Chem., 55, 2012
5H70
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Crystal structure of ADP bound dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Biswas, A, Jeyakanthan, J, Sekar, K, Kuramitsu, S, Yokoyama, S.
登録日2016-11-15
公開日2016-12-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of ADP bound dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
To Be Published
1VEH
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Solution structure of RSGI RUH-018, a NifU-like domain of hirip5 protein from mouse cDNA
分子名称: NifU-like protein HIRIP5
著者Ohashi, W, Hirota, H, Yamazaki, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-31
公開日2004-09-30
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of RSGI RUH-018, a NifU-like domain of hirip5 protein from mouse cDNA
To be published
1VEJ
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Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA
分子名称: RIKEN cDNA 4931431F19
著者Higuchi, Y, Abe, T, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-31
公開日2005-05-31
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA
To be Published
1VFI
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Solution Structure of Vanabin2 (RUH-017), a Vanadium-binding Protein from Ascidia sydneiensis samea
分子名称: vanadium-binding protein 2
著者Hamada, T, Hirota, H, Asanuma, M, Hayashi, F, Kobayashi, N, Ueki, T, Michibata, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-04-13
公開日2005-03-22
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of Vanabin2, a Vanadium(IV)-Binding Protein from the Vanadium-Rich Ascidian Ascidia sydneiensis samea
J.Am.Chem.Soc., 127, 2005

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