2XAZ
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2XAV
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2XAX
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2XAW
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2X0X
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![BU of 2x0x by Molmil](/molmil-images/mine/2x0x) | Ribonucleotide reductase R1 subunit of E. coli to 2.3 A resolution | Descriptor: | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA, SULFATE ION | Authors: | Yokoyama, K, Uhlin, U, Stubbe, J. | Deposit date: | 2009-12-18 | Release date: | 2010-01-26 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase. J.Am.Chem.Soc., 132, 2010
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2XAY
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2XAK
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![BU of 2xak by Molmil](/molmil-images/mine/2xak) | Ribonucleotide reductase Y730NO2Y modified R1 subunit of E. coli | Descriptor: | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA | Authors: | Yokoyama, K, Uhlin, U, Stubbe, J. | Deposit date: | 2010-03-31 | Release date: | 2010-04-14 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase. J.Am.Chem.Soc., 132, 2010
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2XAP
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2XOF
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![BU of 2xof by Molmil](/molmil-images/mine/2xof) | Ribonucleotide reductase Y122NO2Y modified R2 subunit of E. coli | Descriptor: | MU-OXO-DIIRON, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA | Authors: | Yokoyama, K, Uhlin, U, Stubbe, J. | Deposit date: | 2010-08-15 | Release date: | 2010-08-25 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | A Hot Oxidant, 3-No(2)Y(122) Radical, Unmasks Conformational Gating in Ribonucleotide Reductase. J.Am.Chem.Soc., 132, 2010
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4V4O
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![BU of 4v4o by Molmil](/molmil-images/mine/4v4o) | Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, MAGNESIUM ION, ... | Authors: | Shimamura, T, Koike-Takeshita, A, Yokoyama, K, Masui, R, Murai, N, Yoshida, M, Taguchi, H, Iwata, S. | Deposit date: | 2004-05-23 | Release date: | 2014-07-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of the native chaperonin complex from Thermus thermophilus revealed unexpected asymmetry at the cis-cavity STRUCTURE, 12, 2004
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7STM
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![BU of 7stm by Molmil](/molmil-images/mine/7stm) | Chitin Synthase 2 from Candida albicans bound to UDP-GlcNAc | Descriptor: | 1,2-Distearoyl-sn-glycerophosphoethanolamine, Chitin synthase, MAGNESIUM ION, ... | Authors: | Ren, Z, Chhetri, A, Lee, S, Yokoyama, K. | Deposit date: | 2021-11-14 | Release date: | 2022-07-13 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (3.02 Å) | Cite: | Structural basis for inhibition and regulation of a chitin synthase from Candida albicans. Nat.Struct.Mol.Biol., 29, 2022
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7STO
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![BU of 7sto by Molmil](/molmil-images/mine/7sto) | Chitin Synthase 2 from Candida albicans bound to polyoxin D | Descriptor: | 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1-{(2R,3R,4S,5R)-5-[(S)-{[(2S,3S,4S)-2-amino-5-(carbamoyloxy)-3,4-dihydroxypentanoyl]amino}(carboxy)methyl]-3,4-dihydroxyoxolan-2-yl}-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid (non-preferred name), Chitin synthase | Authors: | Ren, Z, Chhetri, A, Lee, S, Yokoyama, K. | Deposit date: | 2021-11-14 | Release date: | 2022-07-13 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (3.15 Å) | Cite: | Structural basis for inhibition and regulation of a chitin synthase from Candida albicans. Nat.Struct.Mol.Biol., 29, 2022
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7STN
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![BU of 7stn by Molmil](/molmil-images/mine/7stn) | Chitin Synthase 2 from Candida albicans bound to Nikkomycin Z | Descriptor: | (2S)-{[(2S,3S,4S)-2-amino-4-hydroxy-4-(5-hydroxypyridin-2-yl)-3-methylbutanoyl]amino}[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]acetic acid (non-preferred name), 1,2-Distearoyl-sn-glycerophosphoethanolamine, Chitin synthase | Authors: | Ren, Z, Chhetri, A, Lee, S, Yokoyama, K. | Deposit date: | 2021-11-14 | Release date: | 2022-07-13 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (3.19 Å) | Cite: | Structural basis for inhibition and regulation of a chitin synthase from Candida albicans. Nat.Struct.Mol.Biol., 29, 2022
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7STL
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![BU of 7stl by Molmil](/molmil-images/mine/7stl) | Chitin Synthase 2 from Candida albicans at the apo state | Descriptor: | 1,2-Distearoyl-sn-glycerophosphoethanolamine, Chitin synthase | Authors: | Ren, Z, Chhetri, A, Lee, S, Yokoyama, K. | Deposit date: | 2021-11-14 | Release date: | 2022-07-13 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (2.95 Å) | Cite: | Structural basis for inhibition and regulation of a chitin synthase from Candida albicans. Nat.Struct.Mol.Biol., 29, 2022
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3GQB
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![BU of 3gqb by Molmil](/molmil-images/mine/3gqb) | Crystal Structure of the A3B3 complex from V-ATPase | Descriptor: | V-type ATP synthase alpha chain, V-type ATP synthase beta chain | Authors: | Meher, M, Akimoto, S, Iwata, M, Nagata, K, Hori, Y, Yoshida, M, Yokoyama, S, Iwata, S, Yokoyama, K. | Deposit date: | 2009-03-24 | Release date: | 2009-11-24 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of A(3)B(3) complex of V-ATPase from Thermus thermophilus. Embo J., 28, 2009
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6LY9
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![BU of 6ly9 by Molmil](/molmil-images/mine/6ly9) | The membrane-embedded Vo domain of V/A-ATPase from Thermus thermophilus | Descriptor: | V-type ATP synthase subunit C, V-type ATP synthase subunit E, V-type ATP synthase subunit I, ... | Authors: | Kishikawa, J, Nakanishi, A, Furuta, A, Kato, T, Namba, K, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2020-02-13 | Release date: | 2020-09-09 | Last modified: | 2020-09-30 | Method: | ELECTRON MICROSCOPY (3.93 Å) | Cite: | Mechanical inhibition of isolated V o from V/A-ATPase for proton conductance. Elife, 9, 2020
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6LY8
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![BU of 6ly8 by Molmil](/molmil-images/mine/6ly8) | V/A-ATPase from Thermus thermophilus, the soluble domain, including V1, d, two EG stalks, and N-terminal domain of a-subunit. | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | Authors: | Kishikawa, J, Nakanishi, A, Furuta, A, Kato, T, Namba, K, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2020-02-13 | Release date: | 2020-09-09 | Last modified: | 2020-09-30 | Method: | ELECTRON MICROSCOPY (3.5 Å) | Cite: | Mechanical inhibition of isolated V o from V/A-ATPase for proton conductance. Elife, 9, 2020
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6LU2
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![BU of 6lu2 by Molmil](/molmil-images/mine/6lu2) | Crystal structure of a substrate binding protein from Microbacterium hydrocarbonoxydans | Descriptor: | Substrate binding protein | Authors: | Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S. | Deposit date: | 2020-01-25 | Release date: | 2020-03-25 | Last modified: | 2020-04-22 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans. Biochem.Biophys.Res.Commun., 525, 2020
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6LU3
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![BU of 6lu3 by Molmil](/molmil-images/mine/6lu3) | Crystal structure of a substrate binding protein from Microbacterium hydrocarbonoxydans complexed with 4-hydroxybenzoate hydrazide | Descriptor: | 4-oxidanylbenzohydrazide, Substrate binding protein | Authors: | Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S. | Deposit date: | 2020-01-25 | Release date: | 2020-03-25 | Last modified: | 2020-04-22 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans. Biochem.Biophys.Res.Commun., 525, 2020
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6LU4
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![BU of 6lu4 by Molmil](/molmil-images/mine/6lu4) | Crystal structure of the substrate binding protein from Microbacterium hydrocarbonoxydans complexed with propylparaben | Descriptor: | Substrate binding protein, propyl 4-hydroxybenzoate | Authors: | Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S. | Deposit date: | 2020-01-25 | Release date: | 2020-03-25 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans. Biochem.Biophys.Res.Commun., 525, 2020
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1G0D
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![BU of 1g0d by Molmil](/molmil-images/mine/1g0d) | CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE | Descriptor: | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE, SULFATE ION | Authors: | Noguchi, K, Ishikawa, K, Yokoyama, K, Ohtsuka, T, Nio, N, Suzuki, E. | Deposit date: | 2000-10-06 | Release date: | 2001-05-23 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structure of red sea bream transglutaminase. J.Biol.Chem., 276, 2001
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4PYA
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![BU of 4pya by Molmil](/molmil-images/mine/4pya) | MoaC K51A in complex with 3',8-cH2GTP | Descriptor: | (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate, 1,2-ETHANEDIOL, Molybdenum cofactor biosynthesis protein MoaC | Authors: | Tonthat, N.K, Hover, B.M, Yokoyama, K, Schumacher, M.A. | Deposit date: | 2014-03-26 | Release date: | 2015-04-29 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.789 Å) | Cite: | Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis. Proc.Natl.Acad.Sci.USA, 112, 2015
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4PYD
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![BU of 4pyd by Molmil](/molmil-images/mine/4pyd) | MoaC in complex with cPMP crystallized in space group P212121 | Descriptor: | (2R,4AR,5AR,11AR,12AS)-8-AMINO-2-HYDROXY-4A,5A,9,11,11A,12A-HEXAHYDRO[1,3,2]DIOXAPHOSPHININO[4',5':5,6]PYRANO[3,2-G]PTERIDINE-10,12(4H,6H)-DIONE 2-OXIDE, 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ... | Authors: | Tonthat, N.K, Hover, B.M, Yokoyama, K, Schumacher, M.A. | Deposit date: | 2014-03-26 | Release date: | 2015-04-29 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (3.186 Å) | Cite: | Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis. Proc.Natl.Acad.Sci.USA, 112, 2015
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7XKQ
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![BU of 7xkq by Molmil](/molmil-images/mine/7xkq) | F1 domain of FoF1-ATPase with the down form of epsilon subunit from Bacillus PS3 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-20 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (3.3 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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7XKR
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![BU of 7xkr by Molmil](/molmil-images/mine/7xkr) | F1 domain of FoF1-ATPase with the up form of epsilon subunit from Bacillus PS3 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-20 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (2.6 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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