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PDB: 154 results

6O0E
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Saxiphilin:STX complex, soaking
Descriptor: Saxiphilin, [(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate
Authors:Yen, T.J, Lolicato, M, Minor, D.L.
Deposit date:2019-02-16
Release date:2019-07-10
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins.
Sci Adv, 5, 2019
6O0D
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Saxiphilin Apo structure
Descriptor: Saxiphilin
Authors:Yen, T.J, Lolicato, M, Minor, D.L.
Deposit date:2019-02-16
Release date:2019-07-10
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins.
Sci Adv, 5, 2019
6O0F
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Saxiphilin:STX complex, co-crystal
Descriptor: Saxiphilin, [(3aS,4R,10aS)-2,6-diamino-10,10-dihydroxy-3a,4,9,10-tetrahydro-3H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate
Authors:Yen, T.J, Lolicato, M, Minor, D.L.
Deposit date:2019-02-16
Release date:2019-07-10
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structure of the saxiphilin:saxitoxin (STX) complex reveals a convergent molecular recognition strategy for paralytic toxins.
Sci Adv, 5, 2019
5HJZ
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Structure of M. tuberculosis MazF-mt1 (Rv2801c) in complex with RNA
Descriptor: Endoribonuclease MazF9, RNA (5'-R(*CP*AP*UP*C)-D(P*U)-R(P*AP*CP*CP*UP*GP*A)-3')
Authors:Yen, T.J, Brennan, R.G.
Deposit date:2016-01-13
Release date:2017-01-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.976 Å)
Cite:Structure of M. tuberculosis MazF-mt1 (Rv2801c) in complex with RNA
To Be Published
5HK3
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Crystal structure of M. tuberculosis MazF-mt3 T52D-F62D mutant in complex with DNA
Descriptor: DNA (5'-D(*AP*GP*UP*CP*UP*CP*CP*UP*UP*UP*C)-3'), Endoribonuclease MazF6
Authors:Yen, T.J, Brennan, R.G.
Deposit date:2016-01-13
Release date:2017-01-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Crystal structure of M. tuberculosis MazF-mt3 T52D-F62D mutant in complex with DNA
To Be Published
5HKC
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Crystal structure of M. tuberculosis MazF-mt3 T52D-F62D mutant in complex with 8-mer RNA
Descriptor: Endoribonuclease MazF6, RNA (5'-R(*GP*UP*C)-D(P*U)-R(P*CP*CP*UP*A)-3')
Authors:Yen, T.J, Brennan, R.G.
Deposit date:2016-01-14
Release date:2017-01-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal structure of M. tuberculosis MazF-mt3 T52D-F62D mutant in complex with 8-mer RNA
To Be Published
5HK0
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Crystal structure of M. tuberculosis MazF-mt3 (Rv1991c) in complex with RNA
Descriptor: Endoribonuclease MazF6, RNA (5'-R(*AP*GP*UP*C)-D(P*U)-R(P*CP*CP*UP*UP*UP*C)-3')
Authors:Yen, T.J, Brennan, R.G.
Deposit date:2016-01-13
Release date:2017-01-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of M. tuberculosis MazF-mt3 (Rv1991c) in complex with RNA
To Be Published
2IPK
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Crystal Structure of the MHC Class II Molecule HLA-DR1 in Complex with the Fluorogenic Peptide, AcPKXVKQNTLKLAT (X=3-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl]-L-alanine) and the Superantigen, SEC3 Variant 3B2
Descriptor: Enterotoxin type C-3, HA related Fluorogenic Peptide, AcPKXVKQNTLKLAT (X=3-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl]-L-alanine), ...
Authors:Nguyen, T.T, Stern, L.J.
Deposit date:2006-10-12
Release date:2007-03-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Fluorogenic probes for monitoring peptide binding to class II MHC proteins in living cells.
Nat.Chem.Biol., 3, 2007
7WWP
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BU of 7wwp by Molmil
Crystal structure of human Npl4
Descriptor: Nuclear protein localization protein 4 homolog, ZINC ION
Authors:Nguyen, T.Q, Le, L.T.M, Kim, D.H, Ko, K.S, Lee, H.T, Nguyen, Y.T.K, Kim, H.S, Han, B.W, Kang, W, Yang, J.K.
Deposit date:2022-02-14
Release date:2022-09-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structural basis for the interaction between human Npl4 and Npl4-binding motif of human Ufd1.
Structure, 30, 2022
7WWQ
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Crystal structure of human Ufd1-Npl4 complex
Descriptor: Nuclear protein localization protein 4 homolog, Ubiquitin recognition factor in ER-associated degradation protein 1
Authors:Nguyen, T.Q, Le, L.T.M, Kim, D.H, Ko, K.S, Lee, H.T, Nguyen, Y.T.K, Kim, H.S, Han, B.W, Kang, W, Yang, J.K.
Deposit date:2022-02-14
Release date:2022-09-21
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structural basis for the interaction between human Npl4 and Npl4-binding motif of human Ufd1.
Structure, 30, 2022
6SY8
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Mopeia Virus Exonuclease domain fully depleted of Manganese un ALD compound
Descriptor: Nucleoprotein, ZINC ION
Authors:Nguyen, T.H.V, Ferron, F.
Deposit date:2019-09-27
Release date:2021-07-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Inhibition of Arenaviridae nucleoprotein exonuclease by bisphosphonate
Iucrj, 2022
6G13
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BU of 6g13 by Molmil
C-terminal domain of MERS-CoV nucleocapsid
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Nucleoprotein, ...
Authors:Nguyen, T.H.V, Ferron, F.P, Lichiere, J, Canard, B, Papageorgiou, N, Coutard, B.
Deposit date:2018-03-20
Release date:2019-02-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structure and oligomerization state of the C-terminal region of the Middle East respiratory syndrome coronavirus nucleoprotein.
Acta Crystallogr D Struct Biol, 75, 2019
6K95
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Crystal structural of human glutathione-specific gamma-glutamylcyclotransferase 2 (ChaC2)
Descriptor: Glutathione-specific gamma-glutamylcyclotransferase 2
Authors:Nguyen, T.K.Y, Han, B.W.
Deposit date:2019-06-14
Release date:2020-04-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structural and Functional Analyses of Human ChaC2 in Glutathione Metabolism.
Biomolecules, 10, 2019
5OJF
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BU of 5ojf by Molmil
Crystal Structure of KLC2-TPR domain (fragment [A1-B6]
Descriptor: Kinesin light chain 2
Authors:Nguyen, T.Q, Chenon, M, Vilela, F, Velours, C, Andreani, J, Fernandez-Varela, P, Llinas, P, Menetrey, J.
Deposit date:2017-07-21
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural plasticity of the N-terminal capping helix of the TPR domain of kinesin light chain.
PLoS ONE, 12, 2017
7SBN
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BU of 7sbn by Molmil
Human glutaminase C (Y466W) with L-Gln, closed conformation
Descriptor: GLUTAMINE, Isoform 3 of Glutaminase kidney isoform, mitochondrial
Authors:Nguyen, T.-T.T, Cerione, R.A.
Deposit date:2021-09-25
Release date:2022-02-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:High-resolution structures of mitochondrial glutaminase C tetramers indicate conformational changes upon phosphate binding.
J.Biol.Chem., 298, 2022
7SBM
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BU of 7sbm by Molmil
Human glutaminase C (Y466W) with L-Gln, open conformation
Descriptor: GLUTAMINE, Isoform 3 of Glutaminase kidney isoform, mitochondrial
Authors:Nguyen, T.-T.T, Cerione, R.A.
Deposit date:2021-09-25
Release date:2022-02-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:High-resolution structures of mitochondrial glutaminase C tetramers indicate conformational changes upon phosphate binding.
J.Biol.Chem., 298, 2022
7Q5C
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BU of 7q5c by Molmil
Crystal structure of OmpG in space group 96
Descriptor: Outer membrane porin G, SODIUM ION, TETRAETHYLENE GLYCOL, ...
Authors:Nguyen, T.T.M, Khan, A.R, Barringer, R, McManus, J.J, Race, P.R.
Deposit date:2021-11-03
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.717 Å)
Cite:Experimental phase diagrams to optimise OmpG
To Be Published
3TIE
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BU of 3tie by Molmil
Crystal structure of the vaccinia derived peptide A11R in complex with the murine MHC CLASS I H-2 KB
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, K-B alpha chain, ...
Authors:Nguyen, T.T, Shen, Z.T, Stern, L.J.
Deposit date:2011-08-20
Release date:2012-08-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Disparate epitopes mediating protective heterologous immunity to unrelated viruses share peptide-MHC structural features recognized by cross-reactive T cells.
J.Immunol., 191, 2013
8HRZ
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BU of 8hrz by Molmil
Crystal structure of the p97-N/D1 hexamer in complex with six p47-UBX domains
Descriptor: ADENOSINE-5'-DIPHOSPHATE, NSFL1 cofactor p47, Transitional endoplasmic reticulum ATPase
Authors:Nguyen, T.Q, Kang, W.
Deposit date:2022-12-16
Release date:2023-12-20
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the p97-N/D1 hexmaer in complex with six p47-UBX domains
J. Korean Chem. Soc., 68, 2024
3TID
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BU of 3tid by Molmil
Crystal structure of the LCMV derived peptide GP34 in complex with the murine mhc class I H-2 Kb
Descriptor: ACETATE ION, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
Authors:Nguyen, T.T, Shen, Z.T, Stern, L.J.
Deposit date:2011-08-20
Release date:2012-08-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Disparate epitopes mediating protective heterologous immunity to unrelated viruses share peptide-MHC structural features recognized by cross-reactive T cells.
J.Immunol., 191, 2013
6TYQ
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BU of 6tyq by Molmil
Salmonella Typhi PltB Homopentamer with Neu-5NAc-9OAc-alpha-2-6-Gal-beta-1-4-GlcNAc Glycans
Descriptor: 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Pertussis-like toxin subunit B
Authors:Nguyen, T, Milano, S.K, Yang, Y.A, Song, J.
Deposit date:2019-08-09
Release date:2020-02-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:The role of 9-O-acetylated glycan receptor moieties in the typhoid toxin binding and intoxication.
Plos Pathog., 16, 2020
6TYN
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BU of 6tyn by Molmil
Salmonella Typhi PltB Homopentamer with Neu-5NAc-9OAc-alpha-2-3-Gal-beta-1-4-GlcNAc Glycans
Descriptor: 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Pertussis like toxin subunit B
Authors:Nguyen, T, Milano, S.K, Yang, Y.A, Song, J.
Deposit date:2019-08-09
Release date:2020-02-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:The role of 9-O-acetylated glycan receptor moieties in the typhoid toxin binding and intoxication.
Plos Pathog., 16, 2020
5GAN
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The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom
Descriptor: 13 kDa ribonucleoprotein-associated protein, GUANOSINE-5'-TRIPHOSPHATE, Pre-mRNA-processing factor 31, ...
Authors:Nguyen, T.H.D, Galej, W.P, Bai, X.C, Oubridge, C, Scheres, S.H.W, Newman, A.J, Nagai, K.
Deposit date:2015-12-15
Release date:2016-01-27
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 angstrom resolution.
Nature, 530, 2016
6TYO
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Salmonella Typhi PltB Homopentamer with Neu-5NAc-4OAc-alpha-2-3-Gal-beta-1-4-GlcNAc Glycans
Descriptor: 4-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Pertussis-like toxin subunit
Authors:Nguyen, T, Milano, S.K, Yang, Y.A, Song, J.
Deposit date:2019-08-09
Release date:2020-02-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The role of 9-O-acetylated glycan receptor moieties in the typhoid toxin binding and intoxication.
Plos Pathog., 16, 2020
8SXP
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Crystal structure of long neurotoxin from the venom of the king cobra (3FTx-L15) in complex with Fab of broadly neutralizing antibody 95Mat5
Descriptor: 95Mat5 Fab heavy chain, 95Mat5 Fab light chain, Long neurotoxin 2
Authors:Nguyen, T.K.Y.
Deposit date:2023-05-23
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Synthetic development of a broadly neutralizing antibody against snake venom long-chain neurotoxins
Sci Transl Med, 16, 2024

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PDB entries from 2024-09-11

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