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PDB: 247 results

3MLG
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BU of 3mlg by Molmil
2ouf-2x, a designed knotted protein
Descriptor: 2X chimera of Helicobacter pylori protein HP0242
Authors:King, N.P, Sawaya, M.R, Jacobitz, A.W, Yeates, T.O.
Deposit date:2010-04-16
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structure and folding of a designed knotted protein.
Proc.Natl.Acad.Sci.USA, 107, 2010
1SVD
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BU of 1svd by Molmil
The structure of Halothiobacillus neapolitanus RuBisCo
Descriptor: GLYCEROL, Ribulose bisphosphate carboxylase small chain, SULFATE ION, ...
Authors:Kerfeld, C.A, Sawaya, M.R, Pashkov, I, Cannon, G, Williams, E, Tran, K, Yeates, T.O.
Deposit date:2004-03-29
Release date:2005-04-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of Halothiobacillus neapolitanus RuBisCo
To be Published
8V9O
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BU of 8v9o by Molmil
Imaging scaffold engineered to bind the therapeutic protein target BARD1
Descriptor: CALCIUM ION, Tetrahedral Nanocage Cage Component Fused to Anti-BARD1 Darpin, Tetrahedral Nanocage Cage, ...
Authors:Agdanowski, M.P, Castells-Graells, R, Sawaya, M.R, Yeates, T.O, Arbing, M.A.
Deposit date:2023-12-08
Release date:2024-05-15
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (3.81 Å)
Cite:X-ray crystal structure of a designed rigidified imaging scaffold in the ligand-free conformation.
Acta Crystallogr.,Sect.F, 80, 2024
3NGG
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BU of 3ngg by Molmil
X-ray Structure of Omwaprin
Descriptor: Omwaprin-a
Authors:Banigan, J.R, Mandal, K, Sawaya, M.R, Thammavongsa, V, Hendrickx, A.P.A, Schneewind, O, Yeates, T.O, Kent, S.B.H.
Deposit date:2010-06-11
Release date:2010-09-08
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Determination of the X-ray structure of the snake venom protein omwaprin by total chemical synthesis and racemic protein crystallography.
Protein Sci., 19, 2010
1RKI
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BU of 1rki by Molmil
Structure of pag5_736 from P. aerophilum with three disulphide bonds
Descriptor: ACETATE ION, CHLORIDE ION, HEXAETHYLENE GLYCOL, ...
Authors:Beeby, M, Ryttersgaard, C, Boutz, D.R, Perry, L.J, Yeates, T.O.
Deposit date:2003-11-21
Release date:2005-01-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Genomics of Disulfide Bonding and Protein Stabilization in Thermophiles.
Plos Biol., 3, 2005
3MLI
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BU of 3mli by Molmil
2ouf-ds, a disulfide-linked dimer of Helicobacter pylori protein HP0242
Descriptor: CALCIUM ION, Putative uncharacterized protein
Authors:King, N.P, Sawaya, M.R, Jacobitz, A.W, Yeates, T.O.
Deposit date:2010-04-16
Release date:2010-05-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure and folding of a designed knotted protein.
Proc.Natl.Acad.Sci.USA, 107, 2010
3ODV
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BU of 3odv by Molmil
X-ray structure of kaliotoxin by racemic protein crystallography
Descriptor: CITRIC ACID, Potassium channel toxin alpha-KTx 3.1, trifluoroacetic acid
Authors:Pentelute, B.L, Mandal, K, Gates, Z.P, Sawaya, M.R, Yeates, T.O, Kent, S.B.H.
Deposit date:2010-08-11
Release date:2010-10-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Total chemical synthesis and X-ray structure of kaliotoxin by racemic protein crystallography.
Chem.Commun.(Camb.), 46, 2010
3O7O
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BU of 3o7o by Molmil
Use of synthetic symmetrization in the crystallization and structure determination of CelA from Thermotoga maritima
Descriptor: BROMIDE ION, Endoglucanase
Authors:Forse, G.J, Ram, N, Yeates, T.O.
Deposit date:2010-07-30
Release date:2010-12-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Synthetic symmetrization in the crystallization and structure determination of CelA from Thermotoga maritima.
Protein Sci., 20, 2011
3WIS
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BU of 3wis by Molmil
Crystal structure of Burkholderia xenovorans DmrB in complex with FMN: A Cubic Protein Cage for Redox Transfer
Descriptor: FLAVIN MONONUCLEOTIDE, Putative dihydromethanopterin reductase (AfpA), SULFATE ION
Authors:Bobik, T.A, Cascio, D, Jorda, J, McNamara, D.E, Bustos, C, Wang, T.C, Rasche, M.E, Yeates, T.O.
Deposit date:2013-09-25
Release date:2014-02-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer
J.Biol.Chem., 289, 2014
4RCR
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BU of 4rcr by Molmil
STRUCTURE OF THE REACTION CENTER FROM RHODOBACTER SPHAEROIDES R-26 AND 2.4.1: PROTEIN-COFACTOR (BACTERIOCHLOROPHYLL, BACTERIOPHEOPHYTIN, AND CAROTENOID) INTERACTIONS
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (III) ION, ...
Authors:Komiya, H, Yeates, T.O, Chirino, A.J, Rees, D.C, Allen, J.P, Feher, G.
Deposit date:1991-09-09
Release date:1993-10-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the reaction center from Rhodobacter sphaeroides R-26 and 2.4.1: protein-cofactor (bacteriochlorophyll, bacteriopheophytin, and carotenoid) interactions.
Proc.Natl.Acad.Sci.USA, 85, 1988
4ITV
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BU of 4itv by Molmil
Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, triple mutant, P212121 form
Descriptor: Non-haem bromoperoxidase BPO-A2, Matrix protein 1
Authors:Lai, Y.-T, Sawaya, M.R, Yeates, T.O.
Deposit date:2013-01-18
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.598 Å)
Cite:Structure and flexibility of nanoscale protein cages designed by symmetric self-assembly.
J.Am.Chem.Soc., 135, 2013
4IVJ
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BU of 4ivj by Molmil
Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, triple mutant, I222 form
Descriptor: Non-haem bromoperoxidase BPO-A2, Matrix protein 1
Authors:Lai, Y.-T, Sawaya, M.R, Yeates, T.O.
Deposit date:2013-01-23
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (7.351 Å)
Cite:Structure and flexibility of nanoscale protein cages designed by symmetric self-assembly.
J.Am.Chem.Soc., 135, 2013
4KF5
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BU of 4kf5 by Molmil
Crystal Structure of Split GFP complexed with engineered sfCherry with an insertion of GFP fragment
Descriptor: fluorescent protein GFP1-9, fluorescent protein sfCherry+GFP10-11
Authors:Nguyen, H.B, Hung, L.-W, Yeates, T.O, Waldo, G.S, Terwilliger, T.C.
Deposit date:2013-04-26
Release date:2013-12-18
Method:X-RAY DIFFRACTION (2.599 Å)
Cite:Split green fluorescent protein as a modular binding partner for protein crystallization.
Acta Crystallogr.,Sect.D, 69, 2013
4LCL
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BU of 4lcl by Molmil
Simvastatin Synthase (LOVD), from Aspergillus Terreus, LovD6 mutant (simh6208)
Descriptor: ISOPROPYL ALCOHOL, Transesterase
Authors:Gao, X, Sawaya, M.R, Yeates, T.O, Tang, Y.
Deposit date:2013-06-21
Release date:2014-04-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The role of distant mutations and allosteric regulation on LovD active site dynamics.
Nat.Chem.Biol., 10, 2014
4IQ4
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BU of 4iq4 by Molmil
Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains, triple mutant, P21212 form
Descriptor: Non-haem bromoperoxidase BPO-A2, Matrix protein 1
Authors:Lai, Y.-T, Sawaya, M.R, Yeates, T.O.
Deposit date:2013-01-10
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.495 Å)
Cite:Structure and flexibility of nanoscale protein cages designed by symmetric self-assembly.
J.Am.Chem.Soc., 135, 2013
4LCM
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BU of 4lcm by Molmil
Simvastatin Synthase (LOVD), from Aspergillus Terreus, LovD9 mutant (simh9014)
Descriptor: Transesterase
Authors:Gao, X, Sawaya, M.R, Yeates, T.O, Tang, Y.
Deposit date:2013-06-21
Release date:2014-04-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:The role of distant mutations and allosteric regulation on LovD active site dynamics.
Nat.Chem.Biol., 10, 2014
3HIP
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BU of 3hip by Molmil
HIGH-POTENTIAL IRON-SULFUR PROTEIN FROM CHROMATIUM PURPURATUM
Descriptor: HIGH-POTENTIAL IRON-SULFUR PROTEIN, IRON/SULFUR CLUSTER
Authors:Kerfeld, C.A, Salmeen, A.E, Yeates, T.O.
Deposit date:1998-06-15
Release date:1998-11-11
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure and possible dimerization of the high-potential iron-sulfur protein from Chromatium purpuratum.
Biochemistry, 37, 1998
4LIW
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BU of 4liw by Molmil
CcmK1 Carboxysome Shell Protein from Synechocystis PCC6803, L11K Point Mutant
Descriptor: Carbon dioxide-concentrating mechanism protein CcmK homolog 1, SULFATE ION
Authors:Thompson, M.C, Yeates, T.O.
Deposit date:2013-07-03
Release date:2014-01-08
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A challenging interpretation of a hexagonally layered protein structure.
Acta Crystallogr.,Sect.D, 70, 2014
4LOW
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BU of 4low by Molmil
Structure and identification of a pterin dehydratase-like protein as a RuBisCO assembly factor in the alpha-carboxysome
Descriptor: FORMIC ACID, NICKEL (II) ION, acRAF
Authors:Wheatley, N.M, Gidaniyan, S.D, Cascio, D, Yeates, T.O.
Deposit date:2013-07-13
Release date:2013-09-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and Identification of a Pterin Dehydratase-like Protein as a Ribulose-bisphosphate Carboxylase/Oxygenase (RuBisCO) Assembly Factor in the alpha-Carboxysome.
J.Biol.Chem., 289, 2014
4I7A
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BU of 4i7a by Molmil
GrpN pentameric microcompartment shell protein from Rhodospirillum rubrum
Descriptor: CHLORIDE ION, Ethanolamine utilization protein EutN/carboxysome structural protein Ccml
Authors:Wheatley, N.M, Gidaniyan, S.D, Cascio, D, Yeates, T.O.
Deposit date:2012-11-30
Release date:2013-05-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Bacterial microcompartment shells of diverse functional types possess pentameric vertex proteins.
Protein Sci., 22, 2013
4KF4
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BU of 4kf4 by Molmil
Crystal Structure of sfCherry
Descriptor: fluorescent protein sfCherry
Authors:Nguyen, H.B, Hung, L.-W, Yeates, T.O, Waldo, G.S, Terwilliger, T.C.
Deposit date:2013-04-26
Release date:2013-12-18
Method:X-RAY DIFFRACTION (1.994 Å)
Cite:Split green fluorescent protein as a modular binding partner for protein crystallization.
Acta Crystallogr.,Sect.D, 69, 2013
4W74
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BU of 4w74 by Molmil
Crystal Structure of Full-Length Split GFP Mutant E115C/T118H With Metal Mediated Crystal Contacts, P 1 21 1 Space Group
Descriptor: ZINC ION, fluorescent protein E115C/T118H
Authors:Leibly, D.J, Waldo, G.S, Yeates, T.O.
Deposit date:2014-08-21
Release date:2015-02-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.
Structure, 23, 2015
4W6A
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BU of 4w6a by Molmil
Crystal Structure of Full-Length Split GFP Mutant Q157C Disulfide Dimer, P 32 2 1 Space Group
Descriptor: fluorescent protein Q157C
Authors:Leibly, D.J, Waldo, G.S, Yeates, T.O.
Deposit date:2014-08-20
Release date:2015-02-18
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.991 Å)
Cite:A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.
Structure, 23, 2015
4W6H
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BU of 4w6h by Molmil
Crystal Structure of Full-Length Split GFP Mutant D190C Disulfide Dimer, P 65 Space Group
Descriptor: fluorescent protein D190C
Authors:Leibly, D.J, Waldo, G.S, Yeates, T.O.
Deposit date:2014-08-20
Release date:2015-02-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.953 Å)
Cite:A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.
Structure, 23, 2015
4W6L
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BU of 4w6l by Molmil
Crystal Structure of Full-Length Split GFP Mutant D117C Disulfide Dimer, I 41 2 2 Space Group
Descriptor: fluorescent protein D117C
Authors:Leibly, D.J, Waldo, G.S, Yeates, T.O.
Deposit date:2014-08-20
Release date:2015-02-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.
Structure, 23, 2015

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