7E9X
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![BU of 7e9x by Molmil](/molmil-images/mine/7e9x) | Trehalase of Arabidopsis thaliana acid mutant -D380A | Descriptor: | GLYCEROL, Trehalase | Authors: | Taguchi, Y, Saburi, W, Yu, J, Imai, R, Yao, M, Mori, H. | Deposit date: | 2021-03-05 | Release date: | 2022-03-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.88 Å) | Cite: | pH-dependent alteration of substrate specificity of plant trehalase and its molecular mechanism To Be Published
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7EAW
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![BU of 7eaw by Molmil](/molmil-images/mine/7eaw) | Trehalase of Arabidopsis thaliana acid mutant -D380A trehalose complex | Descriptor: | GLYCEROL, Trehalase, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose | Authors: | Taguchi, Y, Saburi, W, Yu, J, Imai, R, Yao, M, Mori, H. | Deposit date: | 2021-03-08 | Release date: | 2022-03-16 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | pH-dependent alteration of substrate specificity of plant trehalase and its molecular mechanism To Be Published
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2ZKL
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![BU of 2zkl by Molmil](/molmil-images/mine/2zkl) | Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus | Descriptor: | Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION | Authors: | Miyafusa, T, Tanaka, Y, Yao, M, Tanaka, I, Tsumoto, K. | Deposit date: | 2008-03-25 | Release date: | 2009-03-31 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.61 Å) | Cite: | Crystal structure of capsular polysaccharide assembling protein from Staphylococcus aureus to be published
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2DU9
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![BU of 2du9 by Molmil](/molmil-images/mine/2du9) | crystal structure of the transcriptional factor from C.glutamicum | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Predicted transcriptional regulators | Authors: | Gao, Y, Yao, M, Tanaka, I. | Deposit date: | 2006-07-20 | Release date: | 2007-07-24 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.28 Å) | Cite: | The structures of transcription factor CGL2947 from Corynebacterium glutamicum in two crystal forms: A novel homodimer assembling and the implication for effector-binding mode Protein Sci., 16, 2007
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2DG0
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![BU of 2dg0 by Molmil](/molmil-images/mine/2dg0) | Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus | Descriptor: | DrP35 | Authors: | Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I. | Deposit date: | 2006-03-07 | Release date: | 2006-12-12 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY J.Biol.Chem., 282, 2007
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3WEO
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![BU of 3weo by Molmil](/molmil-images/mine/3weo) | Sugar beet alpha-glucosidase with acarviosyl-maltohexaose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | Authors: | Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A. | Deposit date: | 2013-07-09 | Release date: | 2014-07-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate J.Biol.Chem., 290, 2014
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2DG1
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![BU of 2dg1 by Molmil](/molmil-images/mine/2dg1) | Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+ | Descriptor: | CALCIUM ION, DrP35, GLYCEROL | Authors: | Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I. | Deposit date: | 2006-03-07 | Release date: | 2006-12-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.72 Å) | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY J.Biol.Chem., 282, 2007
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3WEM
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![BU of 3wem by Molmil](/molmil-images/mine/3wem) | Sugar beet alpha-glucosidase with acarviosyl-maltotetraose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase, ... | Authors: | Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A. | Deposit date: | 2013-07-09 | Release date: | 2014-07-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.591 Å) | Cite: | Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate J.Biol.Chem., 290, 2014
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3WFA
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![BU of 3wfa by Molmil](/molmil-images/mine/3wfa) | Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase | Descriptor: | Alpha-glucosidase, SODIUM ION, {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID | Authors: | Okuyama, M, Yoshida, T, Hondoh, H, Mori, H, Yao, M, Kimura, A. | Deposit date: | 2013-07-18 | Release date: | 2014-07-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase To be Published
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3A1Y
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![BU of 3a1y by Molmil](/molmil-images/mine/3a1y) | The structure of archaeal ribosomal stalk P1/P0 complex | Descriptor: | 50S ribosomal protein P1 (L12P), Acidic ribosomal protein P0 | Authors: | Naganuma, T, Yao, M, Nomura, N, Yu, J, Uchiumi, T, Tanaka, I. | Deposit date: | 2009-04-25 | Release date: | 2009-11-17 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.13 Å) | Cite: | Structural basis for translation factor recruitment to the eukaryotic/archaeal ribosomes J.Biol.Chem., 285, 2010
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3WEL
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![BU of 3wel by Molmil](/molmil-images/mine/3wel) | Sugar beet alpha-glucosidase with acarviosyl-maltotriose | Descriptor: | 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase, GLYCEROL, ... | Authors: | Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A. | Deposit date: | 2013-07-08 | Release date: | 2014-07-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.84 Å) | Cite: | Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate J.Biol.Chem., 290, 2014
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7F81
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![BU of 7f81 by Molmil](/molmil-images/mine/7f81) | Structure of the bacterial cellulose synthase subunit Z from Enterobacter sp. CJF-002 | Descriptor: | GLYCEROL, Glucanase, S,R MESO-TARTARIC ACID | Authors: | Fujiwara, T, Fujishima, A, Yao, M. | Deposit date: | 2021-06-30 | Release date: | 2022-02-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.93 Å) | Cite: | Structural snapshot of a glycoside hydrolase family 8 endo-beta-1,4-glucanase capturing the state after cleavage of the scissile bond. Acta Crystallogr.,Sect.D, 78, 2022
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7F82
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![BU of 7f82 by Molmil](/molmil-images/mine/7f82) | Structure of the bacterial cellulose synthase subunit Z in complex with cellooligosaccharides from Enterobacter sp. CJF-002 | Descriptor: | Glucanase, S,R MESO-TARTARIC ACID, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, ... | Authors: | Fujiwara, T, Fujishima, A, Yao, M. | Deposit date: | 2021-06-30 | Release date: | 2022-02-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Structural snapshot of a glycoside hydrolase family 8 endo-beta-1,4-glucanase capturing the state after cleavage of the scissile bond. Acta Crystallogr.,Sect.D, 78, 2022
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7F3A
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![BU of 7f3a by Molmil](/molmil-images/mine/7f3a) | Arabidopsis thaliana GH1 beta-glucosidase AtBGlu42 | Descriptor: | Beta-glucosidase 42, GLYCEROL | Authors: | Horikoshi, S, Saburi, W, Yu, J, Yao, M. | Deposit date: | 2021-06-16 | Release date: | 2022-03-16 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Substrate specificity of glycoside hydrolase family 1 beta-glucosidase AtBGlu42 from Arabidopsis thaliana and its molecular mechanism. Biosci.Biotechnol.Biochem., 86, 2022
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3WEN
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![BU of 3wen by Molmil](/molmil-images/mine/3wen) | Sugar beet alpha-glucosidase with acarviosyl-maltopentaose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase, ... | Authors: | Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A. | Deposit date: | 2013-07-09 | Release date: | 2014-07-16 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.59 Å) | Cite: | Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate J.Biol.Chem., 290, 2014
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3B07
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![BU of 3b07 by Molmil](/molmil-images/mine/3b07) | Crystal structure of octameric pore form of gamma-hemolysin from Staphylococcus aureus | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Gamma-hemolysin component A, Gamma-hemolysin component B | Authors: | Yamashita, K, Kawai, Y, Tanaka, Y, Yao, M, Tanaka, I. | Deposit date: | 2011-06-06 | Release date: | 2011-10-12 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.495 Å) | Cite: | Crystal structure of the octameric pore of
staphylococcal gamma-hemolysin reveals the beta-barrel
pore formation mechanism by two components Proc.Natl.Acad.Sci.USA, 108, 2011
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2E8G
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![BU of 2e8g by Molmil](/molmil-images/mine/2e8g) | |
2EK5
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![BU of 2ek5 by Molmil](/molmil-images/mine/2ek5) | |
2F2A
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![BU of 2f2a by Molmil](/molmil-images/mine/2f2a) | Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Gln | Descriptor: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, GLUTAMINE, ... | Authors: | Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2005-11-15 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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2DG6
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![BU of 2dg6 by Molmil](/molmil-images/mine/2dg6) | Crystal structure of the putative transcriptional regulator SCO5550 from Streptomyces coelicolor A3(2) | Descriptor: | putative transcriptional regulator | Authors: | Hayashi, T, Tanaka, Y, Sakai, N, Yao, M, Tamura, T, Tanaka, I. | Deposit date: | 2006-03-08 | Release date: | 2007-03-13 | Last modified: | 2018-03-28 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural and genomic DNA analysis of a putative transcription factor SCO5550 from Streptomyces coelicolor A3(2): regulating the expression of gene sco5551 as a transcriptional activator with a novel dimer shape Biochem. Biophys. Res. Commun., 435, 2013
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2DSO
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![BU of 2dso by Molmil](/molmil-images/mine/2dso) | Crystal structure of D138N mutant of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus | Descriptor: | CALCIUM ION, Drp35, GLYCEROL | Authors: | Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I. | Deposit date: | 2006-07-04 | Release date: | 2006-12-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY J.Biol.Chem., 282, 2007
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2DG8
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![BU of 2dg8 by Molmil](/molmil-images/mine/2dg8) | Crystal structure of the putative trasncriptional regulator SCO7518 from Streptomyces coelicolor A3(2) | Descriptor: | putative tetR-family transcriptional regulatory protein | Authors: | Hayashi, T, Watanabe, N, Sakai, N, Tamura, T, Yao, M, Tanaka, I. | Deposit date: | 2006-03-08 | Release date: | 2007-03-13 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Crystal structure of the putative transcriptional regulator SCO7518 from Streptomyces coelicolor A3(2) To be Published
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2DQN
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![BU of 2dqn by Molmil](/molmil-images/mine/2dqn) | Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Asn | Descriptor: | ASPARAGINE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ... | Authors: | Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2006-05-29 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.55 Å) | Cite: | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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6LIU
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![BU of 6liu by Molmil](/molmil-images/mine/6liu) | Crystal structure of apo Tyrosine decarboxylase | Descriptor: | Tyrosine/DOPA decarboxylase 2 | Authors: | Yu, J, Wang, H, Yao, M. | Deposit date: | 2019-12-13 | Release date: | 2020-02-12 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structures clarify cofactor binding of plant tyrosine decarboxylase. Biochem.Biophys.Res.Commun., 2019
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3A7W
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![BU of 3a7w by Molmil](/molmil-images/mine/3a7w) | |