1F2D
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![BU of 1f2d by Molmil](/molmil-images/mine/1f2d) | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE | Descriptor: | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION | Authors: | Yao, M, Ose, T, Sugimoto, H, Horiuchi, A, Nakagawa, A, Yokoi, D, Murakami, T, Honma, M, Wakatsuki, S, Tanaka, I. | Deposit date: | 2000-05-24 | Release date: | 2000-12-20 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus. J.Biol.Chem., 275, 2000
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1WLS
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![BU of 1wls by Molmil](/molmil-images/mine/1wls) | Crystal structure of L-asparaginase I homologue protein from Pyrococcus horikoshii | Descriptor: | L-asparaginase | Authors: | Yao, M, Morita, H, Yasutake, Y, Tanaka, I. | Deposit date: | 2004-06-29 | Release date: | 2005-03-15 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.16 Å) | Cite: | Structure of the type I L-asparaginase from the hyperthermophilic archaeon Pyrococcus horikoshii at 2.16 angstroms resolution. Acta Crystallogr.,Sect.D, 61, 2005
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1IZ6
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![BU of 1iz6 by Molmil](/molmil-images/mine/1iz6) | Crystal Structure of Translation Initiation Factor 5A from Pyrococcus Horikoshii | Descriptor: | Initiation Factor 5A | Authors: | Yao, M, Ohsawa, A, Kikukawa, S, Tanaka, I, Kimura, M. | Deposit date: | 2002-09-25 | Release date: | 2003-01-28 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal Structure of Hyperthermophilic Archaeal Initiation Factor 5A: A Homologue of Eukaryotic Initiation Factor 5A (eIF-5A) J.BIOCHEM.(TOKYO), 133, 2003
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1V7L
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![BU of 1v7l by Molmil](/molmil-images/mine/1v7l) | |
2ZQ0
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![BU of 2zq0 by Molmil](/molmil-images/mine/2zq0) | Crystal structure of SusB complexed with acarbose | Descriptor: | 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase (Alpha-glucosidase SusB), CALCIUM ION | Authors: | Yao, M, Tanaka, I, Kitamura, M. | Deposit date: | 2008-07-31 | Release date: | 2008-10-28 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron. J.Biol.Chem., 283, 2008
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1VGJ
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![BU of 1vgj by Molmil](/molmil-images/mine/1vgj) | Crystal structure of 2'-5' RNA ligase from Pyrococcus horikoshii | Descriptor: | Hypothetical protein PH0099 | Authors: | Yao, M, Morita, H, Okada, A, Tanaka, I. | Deposit date: | 2004-04-27 | Release date: | 2005-06-07 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | The structure of Pyrococcus horikoshii 2'-5' RNA ligase at 1.94 A resolution reveals a possible open form with a wider active-site cleft ACTA CRYSTALLOGR.,SECT.F, 62, 2006
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3W6V
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![BU of 3w6v by Molmil](/molmil-images/mine/3w6v) | Crystal structure of the DNA-binding domain of AdpA, the global transcriptional factor, in complex with a target DNA | Descriptor: | AdpA, DNA (5'-D(*AP*GP*GP*TP*TP*GP*GP*CP*GP*GP*GP*TP*TP*CP*AP*C)-3'), DNA (5'-D(*CP*TP*GP*TP*GP*AP*AP*CP*CP*CP*GP*CP*CP*AP*AP*C)-3') | Authors: | Yao, M.D, Ohtsuka, J, Nagata, K, Miyazono, K, Ohnishi, Y, Tanokura, M. | Deposit date: | 2013-02-22 | Release date: | 2013-09-18 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.95 Å) | Cite: | Complex Structure of the DNA-binding Domain of AdpA, the Global Transcription Factor in Streptomyces griseus, and a Target Duplex DNA Reveals the Structural Basis of Its Tolerant DNA Sequence Specificity J.Biol.Chem., 288, 2013
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1VGG
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![BU of 1vgg by Molmil](/molmil-images/mine/1vgg) | Crystal Structure of the Conserved Hypothetical Protein TTHA1091 from Thermus Thermophilus HB8 | Descriptor: | Conserved Hypothetical Protein TT1634 (TTHA1091) | Authors: | Satoh, S, Yao, M, Kousumi, Y, Ebihara, A, Matsumoto, K, Okamoto, A, Tanaka, I, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-04-26 | Release date: | 2004-10-26 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Crystal Structure of the Conserved Hypothetical Protein TT1634 from Thermus Thermophilus HB8 To be Published
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4V60
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![BU of 4v60 by Molmil](/molmil-images/mine/4v60) | The structure of rat liver vault at 3.5 angstrom resolution | Descriptor: | Major vault protein | Authors: | Kato, K, Zhou, Y, Tanaka, H, Yao, M, Yamashita, E, Yoshimura, M, Tsukihara, T. | Deposit date: | 2008-10-24 | Release date: | 2014-07-09 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (3.5 Å) | Cite: | The structure of rat liver vault at 3.5 angstrom resolution Science, 323, 2009
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4WJ3
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![BU of 4wj3 by Molmil](/molmil-images/mine/4wj3) | Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa | Descriptor: | 76mer-tRNA, Aspartate--tRNA(Asp/Asn) ligase, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, ... | Authors: | Suzuki, T, Nakamura, A, Kato, K, Tanaka, I, Yao, M. | Deposit date: | 2014-09-29 | Release date: | 2014-12-31 | Last modified: | 2020-02-05 | Method: | X-RAY DIFFRACTION (3.705 Å) | Cite: | Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis Proc.Natl.Acad.Sci.USA, 112, 2015
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2G5I
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![BU of 2g5i by Molmil](/molmil-images/mine/2g5i) | Structure of tRNA-Dependent Amidotransferase GatCAB complexed with ADP-AlF4 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ... | Authors: | Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2006-02-23 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.35 Å) | Cite: | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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2G5H
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![BU of 2g5h by Molmil](/molmil-images/mine/2g5h) | Structure of tRNA-Dependent Amidotransferase GatCAB | Descriptor: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... | Authors: | Nakamura, A, Yao, M, Tanaka, I. | Deposit date: | 2006-02-23 | Release date: | 2006-07-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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8IN4
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![BU of 8in4 by Molmil](/molmil-images/mine/8in4) | Eisenia hydrolysis-enhancing protein from Aplysia kurodai | Descriptor: | 25 kDa polyphenol-binding protein, ACETYL GROUP, GLYCEROL | Authors: | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | Deposit date: | 2023-03-08 | Release date: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity. Elife, 12, 2023
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8IN3
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![BU of 8in3 by Molmil](/molmil-images/mine/8in3) | Eisenia hydrolysis-enhancing protein from Aplysia kurodai | Descriptor: | 25 kDa polyphenol-binding protein, GLYCEROL | Authors: | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | Deposit date: | 2023-03-08 | Release date: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.15 Å) | Cite: | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity. Elife, 12, 2023
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8IN6
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![BU of 8in6 by Molmil](/molmil-images/mine/8in6) | Eisenia hydrolysis-enhancing protein from Aplysia kurodai complex with tannic acid | Descriptor: | 25 kDa polyphenol-binding protein, BETA-1,2,3,4,6-PENTA-O-GALLOYL-D-GLUCOPYRANOSE | Authors: | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | Deposit date: | 2023-03-08 | Release date: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity. Elife, 12, 2023
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8IN1
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![BU of 8in1 by Molmil](/molmil-images/mine/8in1) | beta-glucosidase protein from Aplysia kurodai | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-Glucosidase, alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Sun, X.M, Ye, Y.X, Kato, K, Yu, J, Yao, M. | Deposit date: | 2023-03-08 | Release date: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Structural basis of EHEP-mediated offense against phlorotannin-induced defense from brown algae to protect aku BGL activity. Elife, 12, 2023
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5IP3
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![BU of 5ip3 by Molmil](/molmil-images/mine/5ip3) | Tomato spotted wilt tospovirus nucleocapsid protein-ssDNA complex | Descriptor: | DNA (5'-D(P*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*T)-3'), ... | Authors: | Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M. | Deposit date: | 2016-03-09 | Release date: | 2017-03-22 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol., 91, 2017
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5IP2
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![BU of 5ip2 by Molmil](/molmil-images/mine/5ip2) | Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex | Descriptor: | Nucleoprotein, RNA (5'-D(P*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Authors: | Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M. | Deposit date: | 2016-03-09 | Release date: | 2017-03-22 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol., 91, 2017
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3VO9
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![BU of 3vo9 by Molmil](/molmil-images/mine/3vo9) | Staphylococcus aureus FtsZ apo-form (SeMet) | Descriptor: | Cell division protein FtsZ | Authors: | Matsui, T, Yamane, J, Mogi, N, Yao, M, Tanaka, I. | Deposit date: | 2012-01-20 | Release date: | 2012-08-29 | Last modified: | 2013-08-14 | Method: | X-RAY DIFFRACTION (2.706 Å) | Cite: | Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus Acta Crystallogr.,Sect.D, 68, 2012
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6LIV
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![BU of 6liv by Molmil](/molmil-images/mine/6liv) | |
8IDS
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![BU of 8ids by Molmil](/molmil-images/mine/8ids) | Crystal structure of Bacillus sp. AHU2216 GH13_31 Alpha-glucosidase E256Q/N258P in complex with maltotriose | Descriptor: | Alpha-glucosidase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Auiewiriyanukul, W, Saburi, W, Yu, J, Kato, K, Yao, M, Mori, H. | Deposit date: | 2023-02-14 | Release date: | 2023-05-03 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Alteration of Substrate Specificity and Transglucosylation Activity of GH13_31 alpha-Glucosidase from Bacillus sp. AHU2216 through Site-Directed Mutagenesis of Asn258 on beta → alpha Loop 5. Molecules, 28, 2023
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8IBK
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![BU of 8ibk by Molmil](/molmil-images/mine/8ibk) | Crystal structure of Bacillus sp. AHU2216 GH13_31 Alpha-glucosidase E256Q/N258G in complex with maltotriose | Descriptor: | Alpha-glucosidase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Auiewiriyanukul, W, Saburi, W, Yu, J, Kato, K, Yao, M, Mori, H. | Deposit date: | 2023-02-10 | Release date: | 2023-05-03 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.69 Å) | Cite: | Alteration of Substrate Specificity and Transglucosylation Activity of GH13_31 alpha-Glucosidase from Bacillus sp. AHU2216 through Site-Directed Mutagenesis of Asn258 on beta → alpha Loop 5. Molecules, 28, 2023
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3VOA
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![BU of 3voa by Molmil](/molmil-images/mine/3voa) | Staphylococcus aureus FtsZ 12-316 GDP-form | Descriptor: | CALCIUM ION, Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE | Authors: | Yamane, J, Matsui, T, Mogi, N, Yao, M, Tanaka, I. | Deposit date: | 2012-01-20 | Release date: | 2012-08-29 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.73 Å) | Cite: | Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus Acta Crystallogr.,Sect.D, 68, 2012
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3VZR
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![BU of 3vzr by Molmil](/molmil-images/mine/3vzr) | |
3VO8
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![BU of 3vo8 by Molmil](/molmil-images/mine/3vo8) | Staphylococcus aureus FtsZ GDP-form | Descriptor: | CALCIUM ION, Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE | Authors: | Matsui, T, Mogi, N, Yao, M, Tanaka, I. | Deposit date: | 2012-01-20 | Release date: | 2012-08-29 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.255 Å) | Cite: | Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus Acta Crystallogr.,Sect.D, 68, 2012
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