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PDB: 303 results

4QI1
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BU of 4qi1 by Molmil
Crystal structure of H. walsbyi bacteriorhodopsin
Descriptor: Bacteriorhodopsin-I, GLYCEROL, RETINAL, ...
Authors:Wang, A.H.J, Hsu, M.F, Yang, C.S, Fu, H.Y.
Deposit date:2014-05-30
Release date:2015-07-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity.
J. Biol. Chem., 290, 2015
5GSK
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BU of 5gsk by Molmil
Crystal structure of duplex DNA3 in complex with Hg(II) and Sr(II)
Descriptor: DNA (5'-D(*GP*GP*TP*CP*GP*TP*CP*C)-3'), MERCURY (II) ION, STRONTIUM ION
Authors:Liu, H.H, Wang, R, Yao, Q.Q, Cheng, Y.Q, Yang, C, Luo, Q, Wu, B.X, Li, J.X, Ma, J.B, Sheng, J, Gan, J.H.
Deposit date:2016-08-16
Release date:2017-02-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex
Nucleic Acids Res., 45, 2017
1BQJ
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BU of 1bqj by Molmil
CRYSTAL STRUCTURE OF D(ACCCT)
Descriptor: DNA (5'-D(*AP*CP*CP*CP*T)-3')
Authors:Weil, J, Min, T, Yang, C, Wang, S, Sutherland, C, Sinha, N, Kang, C.H.
Deposit date:1998-08-17
Release date:1999-03-18
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Stabilization of the i-motif by intramolecular adenine-adenine-thymine base triple in the structure of d(ACCCT).
Acta Crystallogr.,Sect.D, 55, 1999
3ZIF
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BU of 3zif by Molmil
Cryo-EM structures of two intermediates provide insight into adenovirus assembly and disassembly
Descriptor: HEXON PROTEIN, PENTON PROTEIN, PIX, ...
Authors:Cheng, L, Huang, X, Li, X, Xiong, W, Sun, W, Yang, C, Zhang, K, Wang, Y, Liu, H, Ji, G, Sun, F, Zheng, C, Zhu, P.
Deposit date:2013-01-09
Release date:2014-01-22
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-Em Structures of Two Bovine Adenovirus Type 3 Intermediates
Virology, 450, 2014
4EMM
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BU of 4emm by Molmil
Crystal structure of Staphylococcus aureus ClpP in compact conformation
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Zhang, J, Liu, H, Yang, C.-G.
Deposit date:2012-04-12
Release date:2013-04-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Helix unfolding/refolding characterizes the functional dynamics of Staphylococcus aureus Clp protease
J.Biol.Chem., 288, 2013
3ST9
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BU of 3st9 by Molmil
Crystal structure of ClpP in heptameric form from Staphylococcus aureus
Descriptor: ATP-dependent Clp protease proteolytic subunit, CALCIUM ION, GLYCEROL, ...
Authors:Zhang, J, Ye, F, Lan, L, Jiang, H, Luo, C, Yang, C.-G.
Deposit date:2011-07-09
Release date:2011-09-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structural switching of Staphylococcus aureus Clp protease: a key to understanding protease dynamics
J.Biol.Chem., 286, 2011
4IXA
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BU of 4ixa by Molmil
Structure of DNA-binding domain of the response regulator SaeR from Staphylococcus epidermidis
Descriptor: Response regulator SaeR
Authors:Chen, Y.R, Chen, S.C, Yang, C.S, Kuan, S.M, Liu, Y.H, Chen, Y.
Deposit date:2013-01-24
Release date:2014-01-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of DNA-binding domain of the response regulator SaeR from Staphylococcus epidermidis
To be Published
3STA
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BU of 3sta by Molmil
Crystal structure of ClpP in tetradecameric form from Staphylococcus aureus
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Zhang, J, Ye, F, Lan, L, Jiang, H, Luo, C, Yang, C.-G.
Deposit date:2011-07-09
Release date:2011-09-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural switching of Staphylococcus aureus Clp protease: a key to understanding protease dynamics
J.Biol.Chem., 286, 2011
4Q47
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BU of 4q47 by Molmil
Structure of the DrRecQ Catalytic Core in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA helicase RecQ, ZINC ION
Authors:Chen, S.C, Yang, C.S, Chen, Y.
Deposit date:2014-04-14
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.899 Å)
Cite:Crystal structure of Deinococcus radiodurans RecQ helicase catalytic core domain: the interdomain flexibility.
Biomed Res Int, 2014, 2014
8W7R
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BU of 8w7r by Molmil
H. walsbyi bacteriorhodopsin mutant - W94F
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin-I, GLYCEROL, ...
Authors:Li, G.Y, Chen, J.C, Yang, C.S.
Deposit date:2023-08-31
Release date:2024-10-02
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Crystal structure of H. walsbyi bacteriorhodopsin mutant - W94F at 2.38 Angstroms resolution.
To Be Published
4Q48
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BU of 4q48 by Molmil
Structure of the RecQ Catalytic Core from Deinococcus radiodurans
Descriptor: DNA helicase RecQ, ZINC ION
Authors:Chen, S.C, Yang, C.S, Chen, Y.
Deposit date:2014-04-14
Release date:2015-05-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.797 Å)
Cite:Crystal structure of Deinococcus radiodurans RecQ helicase catalytic core domain: the interdomain flexibility.
Biomed Res Int, 2014, 2014
4NES
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BU of 4nes by Molmil
Crystal structure of Methanocaldococcus jannaschii UDP-GlcNAc 2-epimerase in complex with UDP-GlcNAc and UDP
Descriptor: UDP-N-acetylglucosamine 2-epimerase, URIDINE-5'-DIPHOSPHATE, URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
Authors:Chen, S.C, Yang, C.S, Huang, C.H, Chen, Y.
Deposit date:2013-10-30
Release date:2014-04-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Crystal structures of the archaeal UDP-GlcNAc 2-epimerase from Methanocaldococcus jannaschii reveal a conformational change induced by UDP-GlcNAc.
Proteins, 82, 2014
4EMP
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BU of 4emp by Molmil
Crystal structure of the mutant of ClpP E137A from Staphylococcus aureus
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Ye, F, Zhang, J, Liu, H, Luo, C, Yang, C.-G.
Deposit date:2012-04-12
Release date:2013-04-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Helix unfolding/refolding characterizes the functional dynamics of Staphylococcus aureus Clp protease
J.Biol.Chem., 288, 2013
7YJW
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BU of 7yjw by Molmil
Structure of Leptospira santarosai serovar shermani LRR protein LSS01692
Descriptor: Membrane protein
Authors:Wu, C.T, Hsu, S.H, Yang, C.W, Sun, Y.J.
Deposit date:2022-07-20
Release date:2023-06-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of Leptospira LSS_01692 reveals a dimeric structure and induces inflammatory responses through Toll-like receptor 2-dependent NF-kappa B and MAPK signal transduction pathways.
Febs J., 290, 2023
7VP9
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BU of 7vp9 by Molmil
Crystal structure of human ClpP in complex with ZG111
Descriptor: (6S,9aS)-N-[(4-bromophenyl)methyl]-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide, ATP-dependent Clp protease proteolytic subunit, mitochondrial, ...
Authors:Wang, P.Y, Gan, J.H, Yang, C.-G.
Deposit date:2021-10-15
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.552 Å)
Cite:Aberrant human ClpP activation disturbs mitochondrial proteome homeostasis to suppress pancreatic ductal adenocarcinoma.
Cell Chem Biol, 29, 2022
5Z2N
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BU of 5z2n by Molmil
Structure of Orp1L N-terminal Domain
Descriptor: Oxysterol-binding protein-related protein 1
Authors:Ma, X.L, Liu, K, Li, J, Li, H.H, Li, J, Yang, C.L, Liang, H.H.
Deposit date:2018-01-03
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:A non-canonical GTPase interaction enables ORP1L-Rab7-RILP complex formation and late endosome positioning.
J. Biol. Chem., 293, 2018
4IWM
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BU of 4iwm by Molmil
Crystal Structure of the Conserved Hypothetical Protein MJ0927 from Methanocaldococcus jannaschii (in P21 form)
Descriptor: UPF0135 protein MJ0927
Authors:Kuan, S.M, Chen, S.C, Yang, C.S, Chen, Y.R, Liu, Y.H, Chen, Y.
Deposit date:2013-01-24
Release date:2014-01-29
Last modified:2021-04-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of a conserved hypothetical protein MJ0927 from Methanocaldococcus jannaschii reveals a novel quaternary assembly in the Nif3 family.
Biomed Res Int, 2014, 2014
7ESG
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BU of 7esg by Molmil
Crystal structure of Haloarcula marismortui CheB with Glutathione S-transferase expression tag
Descriptor: Glutathione S-transferase,Protein-glutamate methylesterase/protein-glutamine glutaminase
Authors:Chen, K.L, Yang, C.S.
Deposit date:2021-05-10
Release date:2022-07-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Crystal structure of Haloarcula marismortui CheB with Glutathione S-transferase expression tag
To Be Published
8TBB
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BU of 8tbb by Molmil
F9S, novel TIM-3 targeting antibody, bound to IgV domain of TIM-3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, F9S Fab heavy chain, F9S Fab light chain, ...
Authors:Oganesyan, V, van Dyk, N, Mazor, Y, Yang, C.
Deposit date:2023-06-28
Release date:2024-08-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Generation of AZD7789, a novel PD-1 and TIM-3 targeting bispecific antibody, which binds to a differentiated epitope of TIM-3
To be published
4IWG
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BU of 4iwg by Molmil
Crystal Structure of the Conserved Hypothetical Protein MJ0927 from Methanocaldococcus jannaschii (in C2221 form)
Descriptor: UPF0135 protein MJ0927
Authors:Kuan, S.M, Chen, S.C, Yang, C.S, Chen, Y.R, Liu, Y.H, Chen, Y.
Deposit date:2013-01-23
Release date:2014-01-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.472 Å)
Cite:Crystal structure of a conserved hypothetical protein MJ0927 from Methanocaldococcus jannaschii reveals a novel quaternary assembly in the Nif3 family.
Biomed Res Int, 2014, 2014
5Z2M
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BU of 5z2m by Molmil
Structure of Orp1L/Rab7 complex
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Oxysterol-binding protein-related protein 1, ...
Authors:Ma, X.L, Liu, K, Li, J, Li, H.H, Li, J, Yang, C.L, Liang, H.H.
Deposit date:2018-01-03
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.142 Å)
Cite:A non-canonical GTPase interaction enables ORP1L-Rab7-RILP complex formation and late endosome positioning.
J. Biol. Chem., 293, 2018
8TFT
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BU of 8tft by Molmil
Fab of O13-1 human IgG1 antibody bound to IgV domain of human TIM-3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, O-13-1 IgG1 Fab heavy chain, O-13-1 IgG1 Fab light chain, ...
Authors:Oganesyan, V.Y, van Dyk, N, Mazor, Y, Yang, C.
Deposit date:2023-07-11
Release date:2024-08-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Generation of AZD7789, a novel PD-1 and TIM-3 targeting bispecific antibody, which binds to a differentiated epitope of TIM-3
To be published
8HY8
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BU of 8hy8 by Molmil
Bacterial STING from Epilithonimonas lactis
Descriptor: CD-NTase-associated protein 12
Authors:Wang, Y.-C, Yang, C.-S, Hou, M.-H, Chen, Y.
Deposit date:2023-01-06
Release date:2024-01-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.568 Å)
Cite:Structural insights into the regulation, ligand recognition, and oligomerization of bacterial STING.
Nat Commun, 14, 2023
7WID
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BU of 7wid by Molmil
Crystal structure of Staphylococcus aureus ClpP in complex with ZG180
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (6S,9aS)-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-N-[4,4,4-tris(fluoranyl)butyl]-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide, ATP-dependent Clp protease proteolytic subunit, ...
Authors:Wei, B.Y, Gan, J.H, Yang, C.-G.
Deposit date:2022-01-03
Release date:2022-11-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Anti-infective therapy using species-specific activators of Staphylococcus aureus ClpP.
Nat Commun, 13, 2022
7WH5
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BU of 7wh5 by Molmil
Crystal structure of human ClpP in complex with ZG180
Descriptor: (6S,9aS)-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-N-[4,4,4-tris(fluoranyl)butyl]-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide, ATP-dependent Clp protease proteolytic subunit, mitochondrial, ...
Authors:Wei, B.Y, Gan, J.H, Yang, C.-G.
Deposit date:2021-12-29
Release date:2022-11-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Anti-infective therapy using species-specific activators of Staphylococcus aureus ClpP.
Nat Commun, 13, 2022

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