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PDB: 677 results

1UG6
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Structure of beta-glucosidase at atomic resolution from thermus thermophilus HB8
Descriptor: GLYCEROL, beta-glycosidase
Authors:Lokanath, N.K, Shiromizu, I, Miyano, M, Yokoyama, S, Kuramitsu, S, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-12
Release date:2003-06-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Structure of Beta-Glucosidase at Atomic Resolution from Thermus Thermophilus Hb8
To be Published
1UB7
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BU of 1ub7 by Molmil
The Crystal Analysis of Beta-Keroacyl-[Acyl Carrier Protein] Synthase III (FABH)From Thermus Thermophilus.
Descriptor: 3-oxoacyl-[acyl-carrier protein] synthase, GLYCEROL
Authors:Inagaki, E, Miyano, M, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-03-31
Release date:2003-04-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Crystal Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) from Thermus Thermophilus
To be Published
1UB0
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BU of 1ub0 by Molmil
Crystal Structure Analysis of Phosphomethylpyrimidine Kinase (ThiD) from Thermus Thermophilus Hb8
Descriptor: 1,4-DIETHYLENE DIOXIDE, GLYCEROL, Phosphomethylpyrimidine Kinase, ...
Authors:Bagautdinov, B, Kuramitsu, S, Yokoyama, S, Miyano, M, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-03-26
Release date:2003-04-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structure Analysis of Phosphomethylpyrimidine Kinase (ThiD) from Thermus Thermophilus Hb8
To be Published
1UFY
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BU of 1ufy by Molmil
Crystal analysis of chorismate mutase from thermus thermophilus
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Chorismate mutase, ...
Authors:Inagaki, E, Miyano, M, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-11
Release date:2003-07-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:The Crystal Structure of Chorismate Mutase from Thermus Thermophilus
To be Published
1UI9
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Crystal analysis of chorismate mutase from thermus thermophilus
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, chorismate mutase
Authors:Inagaki, E, Kuramitsu, S, Yokoyama, S, Miyano, M, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-15
Release date:2003-07-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The crystal structure of chorismate mutase from thermus thermophilus
To be Published
1UKW
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BU of 1ukw by Molmil
Crystal structure of medium-chain acyl-CoA dehydrogenase from Thermus thermophilus HB8
Descriptor: COBALT (II) ION, FLAVIN-ADENINE DINUCLEOTIDE, acyl-CoA dehydrogenase
Authors:Hamada, K, Ago, H, Kuramitsu, S, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-02
Release date:2004-11-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of Thermus thermophilus medium-chain acyl-CoA dehydrogenase
To be published
1VEL
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BU of 1vel by Molmil
Mycobacterium smegmatis Dps tetragonal form
Descriptor: CADMIUM ION, SODIUM ION, SULFATE ION, ...
Authors:Roy, S, Gupta, S, Das, S, Sekar, K, Chatterji, D, Vijayan, M.
Deposit date:2004-04-01
Release date:2004-06-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:X-ray analysis of Mycobacterium smegmatis Dps and a comparative study involving other Dps and Dps-like molecules
J.Mol.Biol., 339, 2004
2LY1
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BU of 2ly1 by Molmil
NMR structure of the second and third lotus domains of tudor domain-containing protein 7 (NMR ensemble overlay for Lotus #2)
Descriptor: Tudor domain-containing protein 7
Authors:Cui, G, Botuyan, M, Mer, G.
Deposit date:2012-09-10
Release date:2013-09-11
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR structure of the second and third lotus domains of tudor domain-containing protein 7
To be Published
1VEQ
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BU of 1veq by Molmil
Mycobacterium smegmatis Dps Hexagonal form
Descriptor: FE (III) ION, starvation-induced DNA protecting protein
Authors:Roy, S, Gupta, S, Das, S, Sekar, K, Chatterji, D, Vijayan, M.
Deposit date:2004-04-03
Release date:2004-06-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.98 Å)
Cite:X-ray analysis of Mycobacterium smegmatis Dps and a comparative study involving other Dps and Dps-like molecules
J.Mol.Biol., 339, 2004
1VEI
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Mycobacterium smegmatis Dps
Descriptor: FE (III) ION, SULFATE ION, starvation-induced DNA protecting protein
Authors:Roy, S, Gupta, S, Das, S, Sekar, K, Chatterji, D, Vijayan, M.
Deposit date:2004-03-31
Release date:2004-06-29
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:X-ray Analysis of Mycobacterium smegmatis Dps and a Comparative Study Involving Other Dps and Dps-like Molecules
J.Mol.Biol., 339, 2004
1V8E
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BU of 1v8e by Molmil
Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase from Thermus thermophilus HB8
Descriptor: putative glycerophosphoryl diester phosphodiesterase
Authors:Ishijima, J, Ida, K, Yutani, K, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-01-05
Release date:2005-01-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of glycerophosphoryl diester phosphodiesterase from Thermus thermophilus HB8
To be Published
2LH9
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BU of 2lh9 by Molmil
NMR structure of the first lotus domain of tudor domain-containing protein 7
Descriptor: Tudor domain-containing protein 7
Authors:Cui, G, Botuyan, M, Mer, G.
Deposit date:2011-08-06
Release date:2012-08-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR structure of Tudor domain-containing protein 7
To be Published
2LY2
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BU of 2ly2 by Molmil
NMR structure of the second and third lotus domains of tudor domain-containing protein 7 (NMR ensemble overlay for Lotus #3)
Descriptor: Tudor domain-containing protein 7
Authors:Cui, G, Botuyan, M, Mer, G.
Deposit date:2012-09-10
Release date:2013-09-11
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR structure of the second and third lotus domains of tudor domain-containing protein 7
To be Published
1J3L
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BU of 1j3l by Molmil
Structure of the RNA-processing inhibitor RraA from Thermus thermophilis
Descriptor: CHLORIDE ION, Demethylmenaquinone Methyltransferase, MAGNESIUM ION
Authors:Rehse, P.H, Miyano, M, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-02-04
Release date:2004-02-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the RNA-processing inhibitor RraA from Thermus thermophilis.
Acta Crystallogr.,Sect.D, 60, 2004
2O02
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BU of 2o02 by Molmil
Phosphorylation independent interactions between 14-3-3 and Exoenzyme S: from structure to pathogenesis
Descriptor: 14-3-3 protein zeta/delta, BENZOIC ACID, ExoS (416-430) peptide
Authors:Ottmann, C, Yasmin, L, Weyand, M, Hauser, A.R, Wittinghofer, A, Hallberg, B.
Deposit date:2006-11-27
Release date:2007-11-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Phosphorylation-independent interaction between 14-3-3 and exoenzyme S: from structure to pathogenesis
Embo J., 26, 2007
2CVZ
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BU of 2cvz by Molmil
Structure of hydroxyisobutyrate dehydrogenase from thermus thermophilus HB8
Descriptor: 3-hydroxyisobutyrate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Lokanath, N.K, Kunishima, N, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-14
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Novel NADP-dependent 3-Hydroxyisobutyrate Dehydrogenase from Thermus thermophilus HB8
J.Mol.Biol., 352, 2005
2DCH
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BU of 2dch by Molmil
Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I
Descriptor: CHLORIDE ION, SULFATE ION, putative homing endonuclease
Authors:Nakayama, H, Tsuge, H, Shimamura, T, Miyano, M, Nomura, N, Sako, Y.
Deposit date:2006-01-06
Release date:2006-07-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure of a hyperthermophilic archaeal homing endonuclease, I-Tsp061I: contribution of cross-domain polar networks to thermostability.
J.Mol.Biol., 365, 2007
2CVD
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BU of 2cvd by Molmil
Crystal structure analysis of human hematopoietic prostaglandin D synthase complexed with HQL-79
Descriptor: 4-(BENZHYDRYLOXY)-1-[3-(1H-TETRAAZOL-5-YL)PROPYL]PIPERIDINE, GLUTATHIONE, GLYCEROL, ...
Authors:Aritake, K, Kado, Y, Inoue, T, Miyano, M, Urade, Y.
Deposit date:2005-06-02
Release date:2006-04-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and Functional Characterization of HQL-79, an Orally Selective Inhibitor of Human Hematopoietic Prostaglandin D Synthase.
J.Biol.Chem., 281, 2006
2CLI
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BU of 2cli by Molmil
Tryptophan Synthase in complex with N-(4'- trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9)
Descriptor: 2-({[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}AMINO)ETHYL DIHYDROGEN PHOSPHATE, PYRIDOXAL-5'-PHOSPHATE, SODIUM ION, ...
Authors:Ngo, H, Harris, R, Kimmich, N, Casino, P, Niks, D, Blumenstein, L, Barends, T.R, Kulik, V, Weyand, M, Schlichting, I, Dunn, M.F.
Deposit date:2006-04-27
Release date:2007-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Synthesis and Characterization of Allosteric Probes of Substrate Channeling in the Tryptophan Synthase Bienzyme Complex.
Biochemistry, 46, 2007
2CLH
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Tryptophan Synthase in complex with (naphthalene-2'-sulfonyl)-2-amino- 1-ethylphosphate (F19)
Descriptor: 2-[(2-NAPHTHYLSULFONYL)AMINO]ETHYL DIHYDROGEN PHOSPHATE, PYRIDOXAL-5'-PHOSPHATE, SODIUM ION, ...
Authors:Ngo, H, Harris, R, Kimmich, N, Casino, P, Niks, D, Blumenstein, L, Barends, T.R, Kulik, V, Weyand, M, Schlichting, I, Dunn, M.F.
Deposit date:2006-04-27
Release date:2007-06-12
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Synthesis and characterization of allosteric probes of substrate channeling in the tryptophan synthase bienzyme complex.
Biochemistry, 46, 2007
2DM6
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BU of 2dm6 by Molmil
Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex
Descriptor: INDOMETHACIN, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADP-dependent leukotriene B4 12-hydroxydehydrogenase, ...
Authors:Hori, T, Ishijima, J, Yokomizo, T, Ago, H, Shimizu, T, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-20
Release date:2006-11-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex reveals the structural basis of broad spectrum indomethacin efficacy
J.Biochem.(Tokyo), 140, 2006
1UIY
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BU of 1uiy by Molmil
Crystal Structure of Enoyl-CoA Hydratase from Thermus Thermophilus HB8
Descriptor: 1,4-DIETHYLENE DIOXIDE, Enoyl-CoA Hydratase, GLYCEROL
Authors:Bagautdinov, B, Kuramitsu, S, Yokoyama, S, Miyano, M, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-07-24
Release date:2003-08-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of enoyl-CoA hydratase from Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 77, 2021
1UKK
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BU of 1ukk by Molmil
Structure of Osmotically Inducible Protein C from Thermus thermophilus
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Osmotically Inducible Protein C
Authors:Rehse, P.H, Kuramitsu, S, Yokoyama, S, Miyano, M, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-08-24
Release date:2004-05-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic Structure and Biochemical Analysis of the Thermus thermophilus Osmotically Inducible Protein C
J.MOL.BIOL., 338, 2004
2LVM
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BU of 2lvm by Molmil
Solution structure of human 53BP1 tandem Tudor domains in complex with a histone H4K20me2 peptide
Descriptor: Histone H4, Tumor suppressor p53-binding protein 1
Authors:Cui, G, Botuyan, M, Mer, G.
Deposit date:2012-07-07
Release date:2012-12-12
Last modified:2013-04-03
Method:SOLUTION NMR
Cite:Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination.
Nat.Struct.Mol.Biol., 20, 2013
2K2W
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BU of 2k2w by Molmil
Second BRCT domain of NBS1
Descriptor: Recombination and DNA repair protein
Authors:Xu, C, Cui, G, Botuyan, M, Mer, G.
Deposit date:2008-04-14
Release date:2008-06-17
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of a second BRCT domain identified in the nijmegen breakage syndrome protein Nbs1 and its function in an MDC1-dependent localization of Nbs1 to DNA damage sites.
J.Mol.Biol., 381, 2008

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